Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99896 * 2 1 4 4 C 1.50697 * 109.47425 * 66.04435 * 3 2 1 5 5 H 1.08012 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00429 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00176 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99816 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46423 * 90.00171 * 8 6 4 10 10 H 1.48495 * 109.47365 * 210.00271 * 8 6 4 11 11 H 1.48496 * 109.47053 * 330.00666 * 8 6 4 12 12 C 1.46898 * 111.00191 * 236.04719 * 2 1 3 13 13 H 1.08992 * 112.90965 * 64.55438 * 12 2 1 14 14 C 1.53954 * 113.66565 * 195.86288 * 12 2 1 15 15 C 1.53785 * 87.11312 * 139.88817 * 14 12 2 16 16 H 1.08997 * 113.61213 * 220.08747 * 15 14 12 17 17 O 1.42901 * 113.61433 * 89.18406 * 15 14 12 18 18 C 1.35892 * 116.99795 * 106.11826 * 17 15 14 19 19 C 1.38738 * 120.05520 * 173.92771 * 18 17 15 20 20 C 1.38151 * 119.94030 * 179.69924 * 19 18 17 21 21 C 1.38255 * 120.05660 * 0.59841 * 20 19 18 22 22 C 1.38268 * 120.11452 * 359.67565 * 21 20 19 23 23 C 1.38137 * 120.05415 * 0.02562 * 22 21 20 24 24 C 1.53779 * 87.07912 * 334.63751 * 15 14 12 25 25 C 1.53001 * 113.61600 * 139.98480 * 24 15 14 26 26 C 1.53010 * 113.61398 * 270.80223 * 24 15 14 27 27 H 1.08998 * 109.46709 * 178.50460 * 1 2 3 28 28 H 1.09001 * 109.47198 * 298.50108 * 1 2 3 29 29 H 1.09003 * 109.47179 * 58.50653 * 1 2 3 30 30 H 1.09003 * 109.47184 * 186.04518 * 3 2 1 31 31 H 1.09006 * 109.47074 * 306.04427 * 3 2 1 32 32 H 0.97000 * 119.99878 * 179.97438 * 7 6 4 33 33 H 1.08997 * 113.53951 * 25.33126 * 14 12 2 34 34 H 1.09001 * 113.73770 * 254.46655 * 14 12 2 35 35 H 1.07996 * 120.02770 * 359.97438 * 19 18 17 36 36 H 1.08006 * 119.96500 * 180.27320 * 20 19 18 37 37 H 1.08004 * 119.94414 * 179.70177 * 21 20 19 38 38 H 1.07997 * 119.97314 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.02655 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.46822 * 200.86218 * 25 24 15 41 41 H 1.09000 * 109.46929 * 320.85845 * 25 24 15 42 42 H 1.08991 * 109.47282 * 80.86003 * 25 24 15 43 43 H 1.08998 * 109.47001 * 290.80468 * 26 24 15 44 44 H 1.08998 * 109.46727 * 50.80327 * 26 24 15 45 45 H 1.08994 * 109.47155 * 170.80608 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6617 8 14 2.9999 4.2762 0.2309 9 1 2.0631 4.9798 -0.6817 10 1 3.8862 5.2679 0.8912 11 1 3.8238 3.3176 -0.5484 12 6 1.9955 -0.7659 -1.1376 13 1 1.7449 -0.3215 -2.1007 14 6 3.4833 -1.1364 -0.9976 15 6 3.1181 -2.5063 -1.5934 16 1 3.6324 -3.3408 -1.1168 17 8 3.1927 -2.5484 -3.0198 18 6 4.2444 -3.2157 -3.5631 19 6 4.3131 -3.4048 -4.9359 20 6 5.3866 -4.0781 -5.4862 21 6 6.3856 -4.5740 -4.6693 22 6 6.3167 -4.3918 -3.3004 23 6 5.2485 -3.7139 -2.7456 24 6 1.6958 -2.2722 -1.0576 25 6 0.5960 -2.7301 -2.0177 26 6 1.4874 -2.7806 0.3704 27 1 -0.3633 -1.0273 -0.0268 28 1 -0.3633 0.4904 0.9031 29 1 -0.3634 0.5369 -0.8763 30 1 3.0798 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8310 32 1 1.9888 4.8552 2.8236 33 1 3.8239 -1.1867 0.0365 34 1 4.1440 -0.5462 -1.6327 35 1 3.5304 -3.0222 -5.5740 36 1 5.4427 -4.2217 -6.5552 37 1 7.2216 -5.1043 -5.1011 38 1 7.0981 -4.7805 -2.6643 39 1 5.1953 -3.5715 -1.6764 40 1 -0.3362 -2.2218 -1.7713 41 1 0.8828 -2.4874 -3.0409 42 1 0.4580 -3.8073 -1.9248 43 1 1.5143 -3.8702 0.3757 44 1 2.2789 -2.3945 1.0126 45 1 0.5206 -2.4393 0.7402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347480049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = 2.762705 kcal Electronic energy + Delta-G solvation = -23515.091406 eV Core-core repulsion = 20305.199818 eV Total energy + Delta-G solvation = -3209.891588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94121 -40.17964 -37.99606 -36.32726 -34.36863 -32.05855 -31.65465 -30.63973 -29.83934 -28.24062 -27.06482 -25.19725 -23.95790 -23.48857 -22.73091 -21.87255 -19.70870 -19.16883 -18.54027 -16.94151 -16.88909 -16.66469 -16.51326 -16.05248 -15.92227 -15.37234 -15.26500 -15.02570 -14.59241 -14.34053 -14.19219 -13.97110 -13.70037 -13.51379 -13.31663 -12.99361 -12.92472 -12.88336 -12.77717 -12.53202 -12.43197 -12.30184 -12.00767 -11.83147 -11.74933 -11.53576 -11.47784 -10.90645 -10.82930 -10.80181 -9.92520 -9.12340 -9.05101 -8.29599 -6.31671 0.41951 0.51815 1.30688 1.32309 1.43003 2.11645 2.31797 2.86630 3.03402 3.24472 3.41942 3.45134 3.73392 3.90539 3.97390 4.05941 4.18041 4.29577 4.34660 4.42391 4.52812 4.56106 4.59020 4.63322 4.73695 4.74743 4.84350 4.85996 4.90162 4.97134 5.02156 5.09353 5.12102 5.15122 5.15931 5.27345 5.39398 5.47880 5.51914 5.57995 5.59178 5.62723 5.92175 6.00443 6.36244 6.51451 6.66878 6.74751 7.31929 8.86863 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.004045 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.348931 B = 6921.181221 C = 7718.596214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.520 5.520 3 C 0.173 3.827 4 C -0.510 4.510 5 H 0.043 0.957 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.940 3.060 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.255 1.255 12 C 0.057 3.943 13 H 0.045 0.955 14 C -0.144 4.144 15 C 0.076 3.924 16 H 0.107 0.893 17 O -0.304 6.304 18 C 0.109 3.891 19 C -0.172 4.172 20 C -0.084 4.084 21 C -0.165 4.165 22 C -0.086 4.086 23 C -0.221 4.221 24 C -0.055 4.055 25 C -0.132 4.132 26 C -0.112 4.112 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.008 0.992 30 H 0.026 0.974 31 H -0.025 1.025 32 H 0.267 0.733 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.131 0.869 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.692 -20.180 -15.338 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.243 5.243 3 C 0.046 3.954 4 C -0.548 4.548 5 H 0.062 0.938 6 C -0.186 4.186 7 N -0.587 5.587 8 Si 0.764 3.236 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.179 1.179 12 C -0.052 4.052 13 H 0.063 0.937 14 C -0.182 4.182 15 C 0.019 3.981 16 H 0.124 0.876 17 O -0.217 6.217 18 C 0.064 3.936 19 C -0.191 4.191 20 C -0.101 4.101 21 C -0.183 4.183 22 C -0.104 4.104 23 C -0.240 4.240 24 C -0.056 4.056 25 C -0.189 4.189 26 C -0.169 4.169 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.044 0.956 31 H -0.007 1.007 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.149 0.851 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.697 -20.141 -14.901 25.934 hybrid contribution -0.004 1.681 -0.610 1.788 sum 6.693 -18.460 -15.512 25.024 Atomic orbital electron populations 1.22252 0.87785 1.01248 0.99505 1.62101 1.07854 1.14037 1.40333 1.19890 0.95140 0.86153 0.94256 1.21242 1.34559 0.97348 1.01690 0.93843 1.25749 0.96980 0.98442 0.97443 1.70030 1.48671 1.13869 1.26119 0.85821 0.79409 0.78860 0.79499 1.19590 1.20393 1.17873 1.23273 0.96045 0.94185 0.91674 0.93685 1.23503 0.96112 0.96663 1.01902 1.23325 0.98508 0.97859 0.78447 0.87586 1.86041 1.43700 1.70024 1.21976 1.19395 0.87654 0.92910 0.93602 1.20700 1.01706 1.04791 0.91883 1.21301 0.92356 0.95260 1.01223 1.21428 1.00522 1.02760 0.93568 1.21301 0.96944 0.96187 0.95993 1.21510 0.96724 1.05125 1.00638 1.22074 0.93320 0.93062 0.97122 1.21638 0.97109 1.01659 0.98464 1.21449 1.02886 1.00358 0.92234 0.89684 0.93259 0.97312 0.95552 1.00719 0.92445 0.88058 0.92188 0.85141 0.83009 0.83474 0.83755 0.84835 0.92431 0.92590 0.91017 0.90802 0.92599 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 8.89 127.69 1.14 2.67 16 2 N -0.52 -21.36 3.97 -898.15 -3.56 -24.92 16 3 C 0.17 8.51 3.73 85.56 0.32 8.83 16 4 C -0.51 -29.73 9.09 25.60 0.23 -29.50 16 5 H 0.04 2.79 7.35 -2.90 -0.02 2.77 16 6 C 0.01 0.66 5.47 84.66 0.46 1.13 16 7 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 8 Si 0.94 45.20 27.47 68.60 1.88 47.09 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.25 -11.63 6.54 99.48 0.65 -10.98 16 12 C 0.06 1.94 2.57 45.50 0.12 2.06 16 13 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 14 C -0.14 -4.47 6.61 31.18 0.21 -4.26 16 15 C 0.08 1.93 3.20 31.12 0.10 2.03 16 16 H 0.11 2.31 5.91 -2.39 -0.01 2.29 16 17 O -0.30 -8.24 8.63 -92.34 -0.80 -9.03 16 18 C 0.11 2.66 6.68 22.51 0.15 2.81 16 19 C -0.17 -3.66 9.99 22.37 0.22 -3.43 16 20 C -0.08 -1.37 10.04 22.25 0.22 -1.15 16 21 C -0.16 -2.54 10.04 22.28 0.22 -2.31 16 22 C -0.09 -1.49 10.04 22.25 0.22 -1.27 16 23 C -0.22 -4.73 9.02 22.37 0.20 -4.53 16 24 C -0.06 -1.46 0.74 -51.65 -0.04 -1.50 16 25 C -0.13 -3.11 8.95 71.98 0.64 -2.46 16 26 C -0.11 -2.80 8.14 71.99 0.59 -2.21 16 27 H 0.08 2.66 4.65 -2.39 -0.01 2.65 16 28 H 0.05 2.14 6.90 -2.39 -0.02 2.13 16 29 H 0.01 0.32 8.13 -2.39 -0.02 0.30 16 30 H 0.03 1.31 6.54 -2.39 -0.02 1.29 16 31 H -0.02 -1.24 7.54 -2.38 -0.02 -1.26 16 32 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.10 3.21 7.60 -2.39 -0.02 3.19 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 38 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.13 2.66 5.92 -2.91 -0.02 2.64 16 40 H 0.06 1.36 7.13 -2.39 -0.02 1.34 16 41 H 0.06 1.41 7.02 -2.39 -0.02 1.39 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.55 7.31 -2.39 -0.02 1.54 16 45 H 0.06 1.69 6.15 -2.39 -0.01 1.68 16 Total: -1.00 -67.61 349.18 3.74 -63.87 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.91 Total: 15.32 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 5.01 Total: -33.10 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -3.26 Total: -84.14 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.80 Total: -9.03 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.09 kcal Total: -67.61 3.74 -63.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347480049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.629 kcal (2) G-P(sol) polarization free energy of solvation -67.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds