Wall clock time and date at job start Tue Mar 31 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00237 * 2 1 4 4 C 1.50699 * 109.47443 * 291.95774 * 3 2 1 5 5 H 1.08001 * 119.99567 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00232 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00315 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00258 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46672 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46968 * 119.99868 * 8 6 4 11 11 H 1.48499 * 109.47361 * 240.00300 * 8 6 4 12 12 C 1.46897 * 110.99950 * 123.95342 * 2 1 3 13 13 H 1.09006 * 112.85245 * 307.28309 * 12 2 1 14 14 C 1.53950 * 113.61569 * 176.00653 * 12 2 1 15 15 C 1.53787 * 87.02140 * 270.80180 * 14 12 2 16 16 H 1.08991 * 113.61274 * 89.22874 * 15 14 12 17 17 O 1.42896 * 113.61443 * 220.04818 * 15 14 12 18 18 C 1.35900 * 117.00327 * 254.43361 * 17 15 14 19 19 C 1.38737 * 120.05386 * 5.84174 * 18 17 15 20 20 C 1.38138 * 119.94696 * 179.74490 * 19 18 17 21 21 C 1.38269 * 120.05348 * 0.25771 * 20 19 18 22 22 C 1.38257 * 120.11197 * 359.97438 * 21 20 19 23 23 C 1.38148 * 120.05798 * 0.02600 * 22 21 20 24 24 C 1.53782 * 87.16958 * 334.63717 * 15 14 12 25 25 C 1.52999 * 113.61238 * 139.94045 * 24 15 14 26 26 C 1.53002 * 113.61633 * 270.83772 * 24 15 14 27 27 H 1.08994 * 109.47183 * 302.35189 * 1 2 3 28 28 H 1.09008 * 109.46976 * 62.34926 * 1 2 3 29 29 H 1.08996 * 109.47356 * 182.34414 * 1 2 3 30 30 H 1.09005 * 109.46721 * 51.95381 * 3 2 1 31 31 H 1.08997 * 109.47332 * 171.95062 * 3 2 1 32 32 H 0.96995 * 119.99939 * 179.97438 * 7 6 4 33 33 H 1.08998 * 113.61727 * 156.28461 * 14 12 2 34 34 H 1.08993 * 113.66867 * 25.32824 * 14 12 2 35 35 H 1.08009 * 120.02268 * 0.02748 * 19 18 17 36 36 H 1.07997 * 119.97427 * 180.27506 * 20 19 18 37 37 H 1.07998 * 119.94181 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.97503 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.02717 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.47524 * 63.96289 * 25 24 15 41 41 H 1.08997 * 109.47347 * 183.96053 * 25 24 15 42 42 H 1.09006 * 109.47060 * 303.95990 * 25 24 15 43 43 H 1.09005 * 109.46554 * 40.49917 * 26 24 15 44 44 H 1.08999 * 109.47193 * 160.49407 * 26 24 15 45 45 H 1.09000 * 109.47265 * 280.49873 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6796 2.0308 -1.3177 5 1 1.1418 1.4855 -2.0792 6 6 2.0770 3.3302 -1.5512 7 7 2.7314 3.9945 -0.6237 8 14 1.6860 4.1474 -3.1848 9 1 0.9467 3.1940 -4.0507 10 1 0.8497 5.3515 -2.9483 11 1 2.9503 4.5463 -3.8539 12 6 1.9954 -0.7660 1.1376 13 1 1.5791 -0.4455 2.0927 14 6 3.5301 -0.8874 1.1420 15 6 3.3516 -2.1617 0.2998 16 1 3.3331 -1.9763 -0.7740 17 8 4.2411 -3.2186 0.6653 18 6 5.2810 -3.4676 -0.1735 19 6 5.5129 -2.6352 -1.2589 20 6 6.5738 -2.8873 -2.1070 21 6 7.4010 -3.9713 -1.8779 22 6 7.1692 -4.8052 -0.7997 23 6 6.1096 -4.5574 0.0514 24 6 1.9533 -2.2888 0.9272 25 6 0.8769 -2.7414 -0.0614 26 6 1.9372 -3.0876 2.2320 27 1 -0.3633 0.5499 0.8681 28 1 -0.3633 0.4770 -0.9104 29 1 -0.3634 -1.0267 0.0420 30 1 1.5344 1.9375 0.8094 31 1 3.0756 1.3459 0.1439 32 1 3.0113 4.9085 -0.7881 33 1 3.9506 -1.0727 2.1304 34 1 4.0344 -0.0802 0.6109 35 1 4.8672 -1.7881 -1.4379 36 1 6.7574 -2.2371 -2.9495 37 1 8.2296 -4.1670 -2.5423 38 1 7.8165 -5.6515 -0.6231 39 1 5.9292 -5.2088 0.8937 40 1 1.1055 -3.7478 -0.4120 41 1 -0.0943 -2.7410 0.4335 42 1 0.8524 -2.0578 -0.9101 43 1 2.8092 -2.8235 2.8304 44 1 1.0299 -2.8547 2.7894 45 1 1.9611 -4.1536 2.0058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347480050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:19 Heat of formation + Delta-G solvation = 5.189881 kcal Electronic energy + Delta-G solvation = -23710.914568 eV Core-core repulsion = 20501.128231 eV Total energy + Delta-G solvation = -3209.786337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89703 -40.22320 -37.96505 -36.24556 -34.33433 -32.09309 -31.71196 -30.63720 -29.39285 -28.14644 -26.78818 -25.48789 -24.21828 -23.48727 -22.71557 -21.96657 -19.33919 -19.15598 -18.37398 -17.22658 -16.77621 -16.69804 -16.34096 -16.17438 -15.63664 -15.48091 -15.36104 -14.91393 -14.37580 -14.29096 -14.11249 -13.97851 -13.54094 -13.39247 -13.22863 -13.09861 -12.94408 -12.76637 -12.69381 -12.50493 -12.40455 -12.29689 -12.10888 -11.88650 -11.68974 -11.47185 -11.36938 -11.00646 -10.86515 -10.59506 -9.91584 -9.08185 -9.01616 -8.21179 -6.30694 0.42882 0.53884 1.39111 1.39886 1.53108 2.30025 2.38577 2.88363 3.09655 3.13839 3.45997 3.52160 3.73166 3.91428 3.99658 4.07718 4.27785 4.30247 4.38473 4.45749 4.53293 4.57146 4.63469 4.68777 4.78114 4.80059 4.85869 4.88027 4.95389 4.96727 5.11427 5.13544 5.14853 5.19254 5.22022 5.31029 5.42370 5.48889 5.55071 5.57644 5.63850 5.66410 5.94111 6.06644 6.31509 6.53928 6.64198 6.86063 7.38983 8.90033 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.004873 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.969371 B = 5744.776915 C = 7114.690412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.523 5.523 3 C 0.207 3.793 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.966 3.034 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.061 3.939 13 H 0.047 0.953 14 C -0.152 4.152 15 C 0.084 3.916 16 H 0.091 0.909 17 O -0.306 6.306 18 C 0.112 3.888 19 C -0.228 4.228 20 C -0.091 4.091 21 C -0.164 4.164 22 C -0.080 4.080 23 C -0.166 4.166 24 C -0.052 4.052 25 C -0.137 4.137 26 C -0.115 4.115 27 H 0.004 0.996 28 H 0.057 0.943 29 H 0.096 0.904 30 H -0.043 1.043 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -18.719 1.483 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.247 5.247 3 C 0.081 3.919 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.196 4.196 7 N -0.576 5.576 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.206 1.206 12 C -0.048 4.048 13 H 0.065 0.935 14 C -0.190 4.190 15 C 0.028 3.972 16 H 0.109 0.891 17 O -0.220 6.220 18 C 0.066 3.934 19 C -0.247 4.247 20 C -0.109 4.109 21 C -0.182 4.182 22 C -0.098 4.098 23 C -0.185 4.185 24 C -0.053 4.053 25 C -0.193 4.193 26 C -0.172 4.172 27 H 0.023 0.977 28 H 0.076 0.924 29 H 0.114 0.886 30 H -0.026 1.026 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.177 0.823 39 H 0.159 0.841 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.040 -18.872 1.269 19.341 hybrid contribution -0.336 2.007 -0.028 2.035 sum 3.703 -16.865 1.241 17.312 Atomic orbital electron populations 1.22535 0.87293 1.02212 0.99828 1.61929 1.08150 1.14841 1.39770 1.19407 0.94084 0.83555 0.94843 1.21484 1.35783 0.97584 1.00860 0.91844 1.25879 0.95036 0.97988 1.00679 1.70098 1.40240 1.11617 1.35633 0.85376 0.77987 0.78269 0.79254 1.18626 1.20512 1.20552 1.22608 0.94979 0.94603 0.92601 0.93534 1.23604 0.96459 0.97694 1.01237 1.24015 0.89212 0.85044 0.98899 0.89109 1.86080 1.36200 1.52929 1.46752 1.19397 0.89102 0.94855 0.89997 1.21465 1.02439 1.02279 0.98519 1.21234 0.93583 0.97670 0.98429 1.21395 1.01236 0.95836 0.99709 1.21345 0.95820 0.99458 0.93192 1.20735 0.97046 0.97380 1.03291 1.22107 0.92594 0.93191 0.97428 1.21868 0.97532 1.01007 0.98936 1.21429 1.02096 0.99735 0.93964 0.97707 0.92446 0.88558 1.02561 0.97137 0.92798 0.88380 0.92747 0.86871 0.84923 0.83377 0.82289 0.84058 0.92062 0.90849 0.91778 0.92605 0.91301 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 8.54 127.69 1.09 2.18 16 2 N -0.52 -22.06 3.80 -898.18 -3.42 -25.47 16 3 C 0.21 11.03 4.62 85.56 0.40 11.42 16 4 C -0.52 -29.32 8.57 25.60 0.22 -29.10 16 5 H 0.06 3.51 7.24 -2.91 -0.02 3.49 16 6 C 0.00 0.11 5.46 84.65 0.46 0.58 16 7 N -0.94 -56.66 13.29 21.45 0.28 -56.37 16 8 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 9 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.06 2.19 2.85 45.50 0.13 2.32 16 13 H 0.05 1.69 8.10 -2.38 -0.02 1.67 16 14 C -0.15 -5.46 7.02 31.18 0.22 -5.24 16 15 C 0.08 2.73 3.01 31.12 0.09 2.82 16 16 H 0.09 3.26 5.94 -2.39 -0.01 3.24 16 17 O -0.31 -9.36 9.29 -92.43 -0.86 -10.22 16 18 C 0.11 3.29 6.68 22.51 0.15 3.44 16 19 C -0.23 -6.95 9.01 22.37 0.20 -6.75 16 20 C -0.09 -2.31 10.04 22.25 0.22 -2.09 16 21 C -0.16 -3.34 10.04 22.28 0.22 -3.11 16 22 C -0.08 -1.55 10.04 22.25 0.22 -1.33 16 23 C -0.17 -3.93 9.99 22.37 0.22 -3.70 16 24 C -0.05 -1.51 1.35 -51.65 -0.07 -1.58 16 25 C -0.14 -3.58 7.44 71.98 0.54 -3.05 16 26 C -0.11 -2.70 8.42 71.98 0.61 -2.09 16 27 H 0.00 0.17 8.10 -2.39 -0.02 0.15 16 28 H 0.06 2.31 7.06 -2.38 -0.02 2.29 16 29 H 0.10 2.89 4.53 -2.39 -0.01 2.88 16 30 H -0.04 -2.55 8.07 -2.38 -0.02 -2.57 16 31 H 0.01 0.61 5.98 -2.39 -0.01 0.60 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.10 3.19 7.64 -2.39 -0.02 3.18 16 34 H 0.05 2.30 6.25 -2.39 -0.01 2.28 16 35 H 0.11 3.86 5.93 -2.91 -0.02 3.84 16 36 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.66 7.12 -2.39 -0.02 1.64 16 42 H 0.06 1.96 6.11 -2.38 -0.01 1.94 16 43 H 0.05 1.36 7.26 -2.38 -0.02 1.34 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -65.10 350.60 3.93 -61.17 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.96 Total: 19.70 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 4.93 Total: -35.27 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -3.13 Total: -81.85 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.86 Total: -10.22 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -65.10 3.93 -61.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347480050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.363 kcal (2) G-P(sol) polarization free energy of solvation -65.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds