Wall clock time and date at job start Tue Mar 31 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 111.00120 * 2 1 4 4 C 1.50699 * 109.46883 * 293.95336 * 3 2 1 5 5 H 1.08000 * 120.00145 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99709 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00147 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00149 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47007 * 59.99924 * 8 6 4 10 10 H 1.48496 * 109.47083 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47073 * 300.00269 * 8 6 4 12 12 C 1.46900 * 110.99819 * 123.95575 * 2 1 3 13 13 H 1.09003 * 112.84615 * 290.62322 * 12 2 1 14 14 C 1.53777 * 113.61646 * 61.82582 * 12 2 1 15 15 C 1.53772 * 87.08443 * 140.06444 * 14 12 2 16 16 H 1.09004 * 113.61895 * 89.19391 * 15 14 12 17 17 O 1.42900 * 113.61746 * 220.01956 * 15 14 12 18 18 C 1.35906 * 116.99537 * 272.65378 * 17 15 14 19 19 C 1.38725 * 120.05814 * 5.21337 * 18 17 15 20 20 C 1.38151 * 119.94205 * 179.69751 * 19 18 17 21 21 C 1.38259 * 120.05608 * 0.59828 * 20 19 18 22 22 C 1.38270 * 120.11193 * 359.67783 * 21 20 19 23 23 C 1.38142 * 120.05303 * 0.02562 * 22 21 20 24 24 C 1.53778 * 113.69050 * 159.36143 * 12 2 1 25 25 C 1.53001 * 113.61406 * 334.55460 * 24 12 2 26 26 C 1.53004 * 113.61758 * 105.45609 * 24 12 2 27 27 H 1.08999 * 109.46809 * 298.43220 * 1 2 3 28 28 H 1.09006 * 109.46633 * 58.43242 * 1 2 3 29 29 H 1.09004 * 109.46785 * 178.42935 * 1 2 3 30 30 H 1.09000 * 109.46901 * 53.95592 * 3 2 1 31 31 H 1.09002 * 109.46974 * 173.95247 * 3 2 1 32 32 H 0.96999 * 119.99777 * 180.02562 * 7 6 4 33 33 H 1.09006 * 113.60945 * 254.61097 * 14 12 2 34 34 H 1.08993 * 113.61801 * 25.42513 * 14 12 2 35 35 H 1.08008 * 120.03056 * 359.97438 * 19 18 17 36 36 H 1.08001 * 119.96933 * 180.31958 * 20 19 18 37 37 H 1.08003 * 119.94739 * 179.69919 * 21 20 19 38 38 H 1.07996 * 119.97318 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.02669 * 180.02562 * 23 22 21 40 40 H 1.08995 * 109.47306 * 65.56286 * 25 24 12 41 41 H 1.09007 * 109.47419 * 185.56894 * 25 24 12 42 42 H 1.09004 * 109.47257 * 305.55780 * 25 24 12 43 43 H 1.08999 * 109.46822 * 59.99905 * 26 24 12 44 44 H 1.08997 * 109.46728 * 179.97438 * 26 24 12 45 45 H 1.08995 * 109.46840 * 299.99562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0269 3.3494 -1.5285 7 7 2.7121 4.0019 -0.6149 8 14 1.5819 4.1873 -3.1377 9 1 0.1047 4.2237 -3.2848 10 1 2.1142 5.5736 -3.1377 11 1 2.1736 3.4303 -4.2700 12 6 1.9954 -0.7660 1.1376 13 1 1.8168 -0.2777 2.0956 14 6 1.5951 -2.2507 1.1186 15 6 3.0214 -2.5604 1.6029 16 1 3.1229 -2.5641 2.6882 17 8 3.5968 -3.7148 0.9878 18 6 3.3479 -4.9151 1.5745 19 6 2.4796 -4.9944 2.6535 20 6 2.2235 -6.2167 3.2442 21 6 2.8414 -7.3586 2.7688 22 6 3.7117 -7.2814 1.6971 23 6 3.9663 -6.0624 1.0991 24 6 3.4472 -1.2362 0.9471 25 6 3.8565 -1.3825 -0.5198 26 6 4.4619 -0.4420 1.7722 27 1 -0.3633 0.4893 0.9037 28 1 -0.3633 0.5380 -0.8757 29 1 -0.3633 -1.0273 -0.0282 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3444 0.1083 32 1 2.9860 4.9182 -0.7767 33 1 0.8228 -2.5039 1.8450 34 1 1.3789 -2.6319 0.1207 35 1 2.0006 -4.1019 3.0286 36 1 1.5436 -6.2797 4.0809 37 1 2.6437 -8.3125 3.2350 38 1 4.1928 -8.1747 1.3273 39 1 4.6459 -6.0026 0.2618 40 1 3.8527 -0.4029 -0.9976 41 1 4.8573 -1.8107 -0.5769 42 1 3.1513 -2.0385 -1.0302 43 1 4.2247 -0.5397 2.8315 44 1 5.4636 -0.8299 1.5872 45 1 4.4202 0.6088 1.4857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347480051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:22 Heat of formation + Delta-G solvation = 10.662309 kcal Electronic energy + Delta-G solvation = -23501.200574 eV Core-core repulsion = 20291.651539 eV Total energy + Delta-G solvation = -3209.549035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70219 -39.09399 -36.83916 -34.67132 -32.34486 -31.14198 -30.26509 -29.77870 -27.06082 -26.91433 -25.73855 -23.97423 -22.67075 -22.13041 -21.81076 -20.34597 -18.20674 -17.98245 -16.33742 -16.10442 -15.82601 -15.25772 -14.98662 -14.63397 -14.50712 -14.17106 -13.79740 -13.48355 -13.21083 -13.09373 -12.79706 -12.52925 -12.18040 -11.97141 -11.78942 -11.63181 -11.50529 -11.47295 -11.20702 -10.97682 -10.93332 -10.86422 -10.55661 -10.43819 -10.40322 -9.96598 -9.85915 -9.53178 -9.13523 -9.08730 -8.41880 -8.18133 -7.25178 -6.02371 -4.03237 1.25196 1.39350 3.29490 3.33549 3.37735 3.40808 3.72314 4.42595 4.57876 4.72943 4.78590 4.86018 4.89096 4.95516 5.02939 5.15554 5.28873 5.33324 5.39901 5.55590 5.61146 5.68317 5.78445 5.85598 5.91187 6.10359 6.11691 6.15275 6.24731 6.28919 6.33273 6.36648 6.43154 6.46867 6.47904 6.61807 6.74795 6.75390 6.81251 7.07940 7.33837 7.36768 7.55293 7.81309 8.10802 8.20451 8.56286 9.04371 9.60862 11.08395 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033208 B = 0.003397 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.971799 B = 8241.403456 C = 8364.614499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.521 5.521 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.067 3.933 13 H 0.056 0.944 14 C -0.148 4.148 15 C 0.062 3.938 16 H 0.090 0.910 17 O -0.293 6.293 18 C 0.139 3.861 19 C -0.209 4.209 20 C -0.082 4.082 21 C -0.168 4.168 22 C -0.083 4.083 23 C -0.159 4.159 24 C -0.048 4.048 25 C -0.104 4.104 26 C -0.142 4.142 27 H 0.009 0.991 28 H 0.074 0.926 29 H 0.044 0.956 30 H -0.013 1.013 31 H 0.036 0.964 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 -18.624 7.501 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.245 5.245 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.043 4.043 13 H 0.074 0.926 14 C -0.186 4.186 15 C 0.005 3.995 16 H 0.107 0.893 17 O -0.206 6.206 18 C 0.093 3.907 19 C -0.227 4.227 20 C -0.100 4.100 21 C -0.187 4.187 22 C -0.101 4.101 23 C -0.177 4.177 24 C -0.048 4.048 25 C -0.161 4.161 26 C -0.199 4.199 27 H 0.028 0.972 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.005 0.995 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.321 -18.598 6.924 19.889 hybrid contribution -0.714 1.047 0.261 1.294 sum 0.607 -17.551 7.185 18.975 Atomic orbital electron populations 1.22170 0.88964 0.99258 1.00618 1.62282 1.06576 1.17813 1.37855 1.19747 0.95730 0.81356 0.96343 1.21123 1.34797 0.96862 1.01722 0.91971 1.24969 0.95340 0.97358 0.96866 1.69946 1.38391 1.11456 1.34053 0.86591 0.78663 0.78365 0.83967 1.20362 1.21421 1.20158 1.22811 0.94745 0.92740 0.93997 0.92622 1.23610 0.95380 0.97010 1.02617 1.24237 0.94863 0.83704 0.96675 0.89258 1.86201 1.70537 1.12400 1.51430 1.19137 0.93465 0.86322 0.91746 1.21351 1.02852 0.99241 0.99299 1.20942 0.98219 0.92087 0.98767 1.20999 1.00235 0.98418 0.99014 1.20935 0.97113 0.96728 0.95345 1.20483 1.03468 0.90592 1.03183 1.21990 0.95003 0.90355 0.97467 1.21231 0.99339 1.03134 0.92416 1.21840 0.98252 1.01409 0.98379 0.97237 0.90746 0.93721 0.99512 0.94651 0.92925 0.91853 0.88224 0.85486 0.86132 0.86292 0.85706 0.85339 0.90498 0.93870 0.92397 0.93276 0.92623 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.22 60.07 0.55 1.29 16 2 N -0.52 -10.81 3.79 -235.34 -0.89 -11.70 16 3 C 0.19 4.86 4.25 -4.98 -0.02 4.84 16 4 C -0.51 -13.92 8.49 -34.44 -0.29 -14.21 16 5 H 0.06 1.70 7.11 -52.49 -0.37 1.32 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.07 1.16 2.63 -66.90 -0.18 0.98 16 13 H 0.06 0.99 8.10 -51.93 -0.42 0.56 16 14 C -0.15 -2.18 5.80 -25.93 -0.15 -2.33 16 15 C 0.06 0.87 2.63 -25.92 -0.07 0.81 16 16 H 0.09 1.15 6.88 -51.93 -0.36 0.79 16 17 O -0.29 -4.32 9.34 -19.44 -0.18 -4.50 16 18 C 0.14 1.85 6.68 -39.22 -0.26 1.58 16 19 C -0.21 -2.48 8.95 -39.43 -0.35 -2.83 16 20 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 21 C -0.17 -1.61 10.04 -39.56 -0.40 -2.01 16 22 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 23 C -0.16 -1.87 9.99 -39.43 -0.39 -2.26 16 24 C -0.05 -0.77 0.87 -153.69 -0.13 -0.91 16 25 C -0.10 -1.82 7.68 37.16 0.29 -1.54 16 26 C -0.14 -2.20 9.16 37.16 0.34 -1.86 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 1.53 6.82 -51.93 -0.35 1.17 16 29 H 0.04 0.74 7.30 -51.93 -0.38 0.36 16 30 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 31 H 0.04 0.94 5.80 -51.93 -0.30 0.64 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 34 H 0.10 1.58 7.61 -51.93 -0.40 1.19 16 35 H 0.13 1.42 5.87 -52.48 -0.31 1.11 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.08 1.56 6.99 -51.93 -0.36 1.20 16 41 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.06 1.03 7.30 -51.93 -0.38 0.65 16 43 H 0.05 0.67 7.95 -51.93 -0.41 0.26 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.32 6.89 -51.93 -0.36 0.96 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -29.27 354.82 -9.30 -38.57 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.33 Total: 0.82 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.96 Total: -19.44 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.16 Total: -37.29 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.18 Total: -4.50 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.27 -9.30 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347480051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.231 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds