Wall clock time and date at job start Tue Mar 31 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 111.00120 * 2 1 4 4 C 1.50699 * 109.46883 * 293.95336 * 3 2 1 5 5 H 1.08000 * 120.00145 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99709 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00147 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00149 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47007 * 59.99924 * 8 6 4 10 10 H 1.48496 * 109.47083 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47073 * 300.00269 * 8 6 4 12 12 C 1.46900 * 110.99819 * 123.95575 * 2 1 3 13 13 H 1.09003 * 112.84615 * 290.62322 * 12 2 1 14 14 C 1.53777 * 113.61646 * 61.82582 * 12 2 1 15 15 C 1.53772 * 87.08443 * 140.06444 * 14 12 2 16 16 H 1.09004 * 113.61895 * 89.19391 * 15 14 12 17 17 O 1.42900 * 113.61746 * 220.01956 * 15 14 12 18 18 C 1.35906 * 116.99537 * 272.65378 * 17 15 14 19 19 C 1.38725 * 120.05814 * 5.21337 * 18 17 15 20 20 C 1.38151 * 119.94205 * 179.69751 * 19 18 17 21 21 C 1.38259 * 120.05608 * 0.59828 * 20 19 18 22 22 C 1.38270 * 120.11193 * 359.67783 * 21 20 19 23 23 C 1.38142 * 120.05303 * 0.02562 * 22 21 20 24 24 C 1.53778 * 113.69050 * 159.36143 * 12 2 1 25 25 C 1.53001 * 113.61406 * 334.55460 * 24 12 2 26 26 C 1.53004 * 113.61758 * 105.45609 * 24 12 2 27 27 H 1.08999 * 109.46809 * 298.43220 * 1 2 3 28 28 H 1.09006 * 109.46633 * 58.43242 * 1 2 3 29 29 H 1.09004 * 109.46785 * 178.42935 * 1 2 3 30 30 H 1.09000 * 109.46901 * 53.95592 * 3 2 1 31 31 H 1.09002 * 109.46974 * 173.95247 * 3 2 1 32 32 H 0.96999 * 119.99777 * 180.02562 * 7 6 4 33 33 H 1.09006 * 113.60945 * 254.61097 * 14 12 2 34 34 H 1.08993 * 113.61801 * 25.42513 * 14 12 2 35 35 H 1.08008 * 120.03056 * 359.97438 * 19 18 17 36 36 H 1.08001 * 119.96933 * 180.31958 * 20 19 18 37 37 H 1.08003 * 119.94739 * 179.69919 * 21 20 19 38 38 H 1.07996 * 119.97318 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.02669 * 180.02562 * 23 22 21 40 40 H 1.08995 * 109.47306 * 65.56286 * 25 24 12 41 41 H 1.09007 * 109.47419 * 185.56894 * 25 24 12 42 42 H 1.09004 * 109.47257 * 305.55780 * 25 24 12 43 43 H 1.08999 * 109.46822 * 59.99905 * 26 24 12 44 44 H 1.08997 * 109.46728 * 179.97438 * 26 24 12 45 45 H 1.08995 * 109.46840 * 299.99562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0269 3.3494 -1.5285 7 7 2.7121 4.0019 -0.6149 8 14 1.5819 4.1873 -3.1377 9 1 0.1047 4.2237 -3.2848 10 1 2.1142 5.5736 -3.1377 11 1 2.1736 3.4303 -4.2700 12 6 1.9954 -0.7660 1.1376 13 1 1.8168 -0.2777 2.0956 14 6 1.5951 -2.2507 1.1186 15 6 3.0214 -2.5604 1.6029 16 1 3.1229 -2.5641 2.6882 17 8 3.5968 -3.7148 0.9878 18 6 3.3479 -4.9151 1.5745 19 6 2.4796 -4.9944 2.6535 20 6 2.2235 -6.2167 3.2442 21 6 2.8414 -7.3586 2.7688 22 6 3.7117 -7.2814 1.6971 23 6 3.9663 -6.0624 1.0991 24 6 3.4472 -1.2362 0.9471 25 6 3.8565 -1.3825 -0.5198 26 6 4.4619 -0.4420 1.7722 27 1 -0.3633 0.4893 0.9037 28 1 -0.3633 0.5380 -0.8757 29 1 -0.3633 -1.0273 -0.0282 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3444 0.1083 32 1 2.9860 4.9182 -0.7767 33 1 0.8228 -2.5039 1.8450 34 1 1.3789 -2.6319 0.1207 35 1 2.0006 -4.1019 3.0286 36 1 1.5436 -6.2797 4.0809 37 1 2.6437 -8.3125 3.2350 38 1 4.1928 -8.1747 1.3273 39 1 4.6459 -6.0026 0.2618 40 1 3.8527 -0.4029 -0.9976 41 1 4.8573 -1.8107 -0.5769 42 1 3.1513 -2.0385 -1.0302 43 1 4.2247 -0.5397 2.8315 44 1 5.4636 -0.8299 1.5872 45 1 4.4202 0.6088 1.4857 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347480051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:22 Heat of formation + Delta-G solvation = -4.759847 kcal Electronic energy + Delta-G solvation = -23501.869329 eV Core-core repulsion = 20291.651539 eV Total energy + Delta-G solvation = -3210.217790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.85841 -40.12971 -37.94287 -36.28348 -34.38211 -32.03752 -31.51906 -30.63842 -29.01148 -28.29847 -27.26332 -25.40464 -23.70496 -23.49220 -22.86426 -21.82915 -19.39037 -19.13733 -18.33824 -17.21402 -16.78966 -16.70440 -16.39614 -16.04039 -15.76529 -15.36844 -15.13044 -14.73840 -14.41632 -14.26208 -14.14138 -14.03941 -13.70808 -13.29493 -13.09925 -13.09223 -12.91895 -12.80013 -12.64842 -12.52206 -12.40063 -12.27079 -12.07744 -11.98451 -11.73254 -11.56872 -11.33188 -11.00930 -10.86945 -10.56927 -9.88344 -9.06921 -8.98147 -8.18149 -6.26979 0.46142 0.56914 1.40665 1.43392 1.51024 2.26020 2.41540 2.91559 3.14592 3.34658 3.46332 3.48513 3.68633 3.81347 4.01268 4.07794 4.29787 4.30553 4.36115 4.45039 4.55800 4.58006 4.60699 4.65134 4.73403 4.80368 4.83775 4.87784 4.99921 5.04232 5.11140 5.15161 5.17336 5.19990 5.25908 5.34456 5.44930 5.50395 5.54652 5.62966 5.66316 5.70186 5.96533 6.11095 6.36468 6.58439 6.70462 6.89444 7.42205 8.92443 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033208 B = 0.003397 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.971799 B = 8241.403456 C = 8364.614499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.526 5.526 3 C 0.214 3.786 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.055 3.945 13 H 0.055 0.945 14 C -0.134 4.134 15 C 0.081 3.919 16 H 0.109 0.891 17 O -0.310 6.310 18 C 0.111 3.889 19 C -0.218 4.218 20 C -0.087 4.087 21 C -0.166 4.166 22 C -0.084 4.084 23 C -0.174 4.174 24 C -0.057 4.057 25 C -0.093 4.093 26 C -0.137 4.137 27 H 0.008 0.992 28 H 0.055 0.945 29 H 0.076 0.924 30 H -0.046 1.046 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.129 0.871 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -21.125 8.112 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.250 5.250 3 C 0.087 3.913 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.195 1.195 12 C -0.054 4.054 13 H 0.073 0.927 14 C -0.171 4.171 15 C 0.024 3.976 16 H 0.127 0.873 17 O -0.224 6.224 18 C 0.066 3.934 19 C -0.237 4.237 20 C -0.105 4.105 21 C -0.184 4.184 22 C -0.102 4.102 23 C -0.193 4.193 24 C -0.058 4.058 25 C -0.150 4.150 26 C -0.194 4.194 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.095 0.905 30 H -0.028 1.028 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.623 -21.129 7.538 22.442 hybrid contribution -0.483 1.691 0.119 1.762 sum 0.141 -19.438 7.658 20.892 Atomic orbital electron populations 1.22162 0.87907 1.00961 0.99664 1.62183 1.07601 1.15228 1.40022 1.19334 0.94253 0.83429 0.94248 1.21450 1.34630 0.97386 1.02488 0.92148 1.25841 0.95156 0.98097 1.00371 1.70075 1.39435 1.11797 1.36068 0.85525 0.78767 0.77230 0.79634 1.19356 1.20950 1.19495 1.22952 0.95921 0.93892 0.92625 0.92717 1.23494 0.96717 0.94098 1.02821 1.23972 0.93676 0.82696 0.97227 0.87346 1.86151 1.71033 1.13011 1.52162 1.19395 0.95114 0.85910 0.93014 1.21494 1.02794 1.00278 0.99119 1.21292 0.98370 0.91644 0.99185 1.21406 0.99124 0.99459 0.98431 1.21286 0.96912 0.96861 0.95119 1.20708 1.03791 0.91100 1.03667 1.22018 0.94526 0.92291 0.96930 1.21066 0.99956 1.00775 0.93225 1.21784 0.98894 0.99258 0.99476 0.97365 0.92571 0.90506 1.02845 0.96772 0.92823 0.89372 0.89268 0.85038 0.83803 0.83567 0.83145 0.85300 0.94148 0.92755 0.92857 0.91215 0.91492 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.22 127.69 1.18 2.76 16 2 N -0.53 -22.37 3.79 -898.48 -3.40 -25.78 16 3 C 0.21 11.27 4.25 85.56 0.36 11.63 16 4 C -0.52 -29.56 8.49 25.60 0.22 -29.34 16 5 H 0.06 3.37 7.11 -2.91 -0.02 3.35 16 6 C 0.00 0.19 5.46 84.65 0.46 0.65 16 7 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 8 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.06 1.92 2.63 45.44 0.12 2.04 16 13 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 14 C -0.13 -3.72 5.80 31.12 0.18 -3.54 16 15 C 0.08 2.18 2.63 31.12 0.08 2.26 16 16 H 0.11 2.52 6.88 -2.38 -0.02 2.51 16 17 O -0.31 -8.81 9.34 -92.49 -0.86 -9.67 16 18 C 0.11 2.76 6.68 22.50 0.15 2.91 16 19 C -0.22 -4.66 8.95 22.37 0.20 -4.46 16 20 C -0.09 -1.50 10.04 22.25 0.22 -1.27 16 21 C -0.17 -2.59 10.04 22.28 0.22 -2.37 16 22 C -0.08 -1.42 10.04 22.25 0.22 -1.20 16 23 C -0.17 -3.83 9.99 22.37 0.22 -3.61 16 24 C -0.06 -1.87 0.87 -51.65 -0.04 -1.91 16 25 C -0.09 -3.35 7.68 71.98 0.55 -2.80 16 26 C -0.14 -4.32 9.16 71.98 0.66 -3.66 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.06 2.33 6.82 -2.38 -0.02 2.32 16 29 H 0.08 2.43 7.30 -2.38 -0.02 2.41 16 30 H -0.05 -2.68 8.12 -2.39 -0.02 -2.70 16 31 H 0.01 0.81 5.80 -2.39 -0.01 0.79 16 32 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.09 2.03 7.94 -2.38 -0.02 2.01 16 34 H 0.09 2.72 7.61 -2.39 -0.02 2.70 16 35 H 0.13 2.58 5.87 -2.91 -0.02 2.56 16 36 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.04 1.72 6.99 -2.39 -0.02 1.71 16 41 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.05 1.92 7.30 -2.38 -0.02 1.91 16 43 H 0.07 1.87 7.95 -2.39 -0.02 1.85 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.04 1.55 6.89 -2.39 -0.02 1.53 16 Total: -1.00 -65.07 354.82 4.01 -61.06 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.95 Total: 15.59 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 5.01 Total: -31.89 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -3.12 Total: -81.80 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.86 Total: -9.67 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -65.07 4.01 -61.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347480051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.301 kcal (2) G-P(sol) polarization free energy of solvation -65.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds