Wall clock time and date at job start Tue Mar 31 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00362 * 2 1 4 4 C 1.53003 * 109.49926 * 299.92201 * 3 2 1 5 5 C 1.53119 * 109.50128 * 59.99411 * 3 2 1 6 6 C 1.53117 * 109.15698 * 62.29442 * 5 3 2 7 7 C 1.53034 * 109.28175 * 57.65224 * 6 5 3 8 8 N 1.46852 * 109.52135 * 300.81820 * 7 6 5 9 9 C 1.46902 * 110.99672 * 185.83714 * 8 7 6 10 10 C 1.50702 * 109.47230 * 66.05269 * 9 8 7 11 11 C 1.38636 * 119.74593 * 269.72877 * 10 9 8 12 12 C 1.37623 * 120.24521 * 179.71976 * 11 10 9 13 13 C 1.40712 * 119.74377 * 0.57054 * 12 11 10 14 14 C 1.41400 * 120.24363 * 179.68527 * 13 12 11 15 15 H 1.08001 * 120.00225 * 155.30418 * 14 13 12 16 16 C 1.39946 * 119.99839 * 335.30245 * 14 13 12 17 17 N 1.30831 * 120.00014 * 342.23943 * 16 14 13 18 18 Si 1.86794 * 120.00069 * 162.23213 * 16 14 13 19 19 H 1.48508 * 109.46924 * 94.66506 * 18 16 14 20 20 H 1.48501 * 109.47416 * 214.66563 * 18 16 14 21 21 H 1.48502 * 109.47160 * 334.66844 * 18 16 14 22 22 C 1.40718 * 119.51400 * 359.69745 * 13 12 11 23 23 C 1.37614 * 119.74148 * 0.02562 * 22 13 12 24 24 C 1.46844 * 111.19629 * 61.74451 * 8 7 6 25 25 H 1.08996 * 109.47061 * 300.00056 * 1 2 3 26 26 H 1.09001 * 109.47150 * 60.00392 * 1 2 3 27 27 H 1.09005 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46936 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47092 * 300.07298 * 4 3 2 30 30 H 1.08998 * 109.47545 * 60.07833 * 4 3 2 31 31 H 1.08990 * 109.52711 * 302.38757 * 5 3 2 32 32 H 1.09001 * 109.51934 * 182.19453 * 5 3 2 33 33 H 1.09001 * 109.50411 * 297.70501 * 6 5 3 34 34 H 1.08997 * 109.53794 * 177.61350 * 6 5 3 35 35 H 1.09008 * 109.46559 * 180.80507 * 7 6 5 36 36 H 1.09000 * 109.45973 * 60.82928 * 7 6 5 37 37 H 1.08993 * 109.47489 * 306.04742 * 9 8 7 38 38 H 1.08999 * 109.46534 * 186.04563 * 9 8 7 39 39 H 1.07994 * 119.87633 * 359.96685 * 11 10 9 40 40 H 1.08001 * 120.12375 * 180.27241 * 12 11 10 41 41 H 0.96995 * 119.99922 * 180.02562 * 17 16 14 42 42 H 1.08001 * 120.12524 * 179.97438 * 22 13 12 43 43 H 1.08001 * 119.87435 * 180.02562 * 23 22 13 44 44 H 1.09004 * 109.46288 * 58.26956 * 24 8 7 45 45 H 1.09002 * 109.46365 * 178.24183 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5608 2.0646 -1.2500 5 6 1.5588 2.0660 1.2499 6 6 2.0633 1.3311 2.4949 7 6 3.5874 1.2104 2.4275 8 7 3.9683 0.4747 1.2150 9 6 5.4146 0.2191 1.1869 10 6 5.7805 -0.7211 2.3064 11 6 6.1331 -0.2104 3.5461 12 6 6.4635 -1.0598 4.5773 13 6 6.4540 -2.4510 4.3661 14 6 6.7981 -3.3331 5.4162 15 1 6.4278 -4.3477 5.4124 16 6 7.6184 -2.8916 6.4605 17 7 8.3432 -1.8126 6.3115 18 14 7.6785 -3.8425 8.0671 19 1 8.8189 -4.7934 8.0371 20 1 7.8536 -2.8950 9.1970 21 1 6.4108 -4.5954 8.2444 22 6 6.0998 -2.9578 3.1020 23 6 5.7675 -2.0899 2.0871 24 6 3.5359 1.1854 0.0050 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.0049 3.0602 -1.2498 29 1 1.8824 1.5228 -2.1394 30 1 0.4744 2.1523 -1.2510 31 1 0.4703 2.1161 1.2726 32 1 1.9705 3.0751 1.2307 33 1 1.6207 0.3357 2.5342 34 1 1.7816 1.8900 3.3872 35 1 3.9485 0.6749 3.3057 36 1 4.0297 2.2062 2.4021 37 1 5.9522 1.1591 1.3116 38 1 5.6856 -0.2305 0.2317 39 1 6.1448 0.8578 3.7043 40 1 6.7337 -0.6600 5.5435 41 1 8.9121 -1.5068 7.0352 42 1 6.0897 -4.0238 2.9289 43 1 5.4950 -2.4766 1.1162 44 1 3.9786 2.1814 -0.0090 45 1 3.8595 0.6319 -0.8765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348251039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:51 Heat of formation + Delta-G solvation = -30.198257 kcal Electronic energy + Delta-G solvation = -23468.619676 eV Core-core repulsion = 20257.298794 eV Total energy + Delta-G solvation = -3211.320882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88694 -37.80075 -36.36200 -33.89278 -32.73726 -31.63541 -30.06812 -29.19654 -27.44191 -26.55702 -26.25048 -24.09897 -22.58227 -21.44301 -20.70036 -19.60530 -19.45903 -17.22890 -16.28598 -15.60690 -15.47089 -15.28793 -15.09193 -14.48121 -14.34725 -13.82991 -13.52162 -13.35889 -13.24648 -12.96089 -12.66873 -12.44358 -12.17464 -11.97875 -11.87590 -11.76759 -11.58407 -11.40106 -11.15351 -10.99312 -10.91260 -10.69217 -10.51516 -10.40655 -10.33823 -10.00221 -9.47392 -9.36524 -9.31147 -9.06206 -7.79765 -7.34555 -7.20737 -6.71048 -4.28465 2.78987 3.09550 3.13389 3.16130 3.23118 3.82423 3.97137 4.30816 4.66092 4.74270 4.82017 4.96947 5.16041 5.26607 5.35087 5.38368 5.48185 5.57121 5.59160 5.66227 5.71502 5.77490 5.78557 5.83436 5.92257 5.98137 6.01526 6.07286 6.21458 6.33536 6.44440 6.48763 6.50590 6.55270 7.01415 7.13483 7.31874 7.35537 7.45241 7.58151 7.61852 7.69743 7.97084 8.12379 8.22361 8.37728 8.70656 8.96333 9.05062 10.23669 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029382 B = 0.003448 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.724885 B = 8118.943261 C = 8187.497362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.353 6.353 3 C 0.119 3.881 4 C -0.178 4.178 5 C -0.145 4.145 6 C -0.112 4.112 7 C 0.056 3.944 8 N -0.520 5.520 9 C 0.120 3.880 10 C -0.204 4.204 11 C -0.095 4.095 12 C -0.166 4.166 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.795 5.795 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.228 4.228 23 C -0.067 4.067 24 C 0.070 3.930 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.279 0.721 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.039 0.961 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 8.598 -9.189 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.271 6.271 3 C 0.079 3.921 4 C -0.235 4.235 5 C -0.183 4.183 6 C -0.150 4.150 7 C -0.072 4.072 8 N -0.244 5.244 9 C -0.006 4.006 10 C -0.205 4.205 11 C -0.114 4.114 12 C -0.185 4.185 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.421 5.421 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.247 4.247 23 C -0.086 4.086 24 C -0.058 4.058 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.133 0.867 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.264 8.128 -9.063 16.585 hybrid contribution 0.305 0.698 0.727 1.053 sum -10.959 8.826 -8.336 16.355 Atomic orbital electron populations 1.22760 0.82790 1.02330 0.99460 1.88147 1.18103 1.26194 1.94666 1.21500 0.93722 0.83701 0.93181 1.22395 1.01709 1.00836 0.98605 1.22197 1.00769 0.99272 0.96029 1.21502 0.96167 1.01221 0.96109 1.22118 0.94733 0.95475 0.94883 1.61936 1.15714 1.46234 1.00494 1.20729 0.85464 0.96416 0.97957 1.18824 1.13652 0.93160 0.94901 1.20501 1.00483 0.96900 0.93526 1.21255 1.05405 0.93477 0.98382 1.17606 0.87918 0.92422 0.91058 1.19588 1.26507 0.98924 1.04361 0.90561 1.25892 0.93450 0.94840 0.99887 1.69837 1.18331 1.21319 1.32610 0.86357 0.79639 0.80050 0.81004 1.19648 1.20113 1.18448 1.20969 1.12565 0.97319 0.93865 1.20322 0.98505 0.92709 0.97092 1.22014 0.92044 0.96823 0.94921 0.94139 0.94527 0.90000 0.91719 0.91650 0.92155 0.91813 0.91626 0.90565 0.92058 0.89076 0.96158 0.96049 0.91764 0.90018 0.86680 0.91033 0.89187 0.89477 0.94346 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.22 101.05 1.03 1.28 16 2 O -0.35 -5.03 9.68 -35.23 -0.34 -5.37 16 3 C 0.12 1.47 0.73 -90.54 -0.07 1.40 16 4 C -0.18 -1.69 8.26 37.16 0.31 -1.39 16 5 C -0.14 -1.68 4.49 -26.61 -0.12 -1.80 16 6 C -0.11 -1.55 5.94 -26.65 -0.16 -1.71 16 7 C 0.06 0.90 5.16 -3.83 -0.02 0.88 16 8 N -0.52 -8.81 4.53 -236.11 -1.07 -9.88 16 9 C 0.12 2.20 5.11 -4.97 -0.03 2.18 16 10 C -0.20 -4.49 4.91 -104.33 -0.51 -5.01 16 11 C -0.10 -2.22 7.85 -39.66 -0.31 -2.53 16 12 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 13 C 0.11 3.05 5.57 -106.82 -0.60 2.46 16 14 C -0.46 -12.55 9.05 -37.74 -0.34 -12.89 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 16 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 17 N -0.80 -20.81 10.97 55.55 0.61 -20.20 16 18 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16 23 C -0.07 -1.57 9.67 -39.66 -0.38 -1.95 16 24 C 0.07 0.98 4.43 -3.84 -0.02 0.96 16 25 H 0.04 0.40 6.37 -51.93 -0.33 0.07 16 26 H 0.04 0.33 6.42 -51.93 -0.33 -0.01 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.51 6.55 -51.93 -0.34 0.17 16 31 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.19 7.80 -51.93 -0.40 0.78 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.72 5.77 -51.92 -0.30 1.42 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 38 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 39 H 0.08 1.74 7.96 -52.49 -0.42 1.33 16 40 H 0.12 3.12 6.18 -52.49 -0.32 2.79 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 42 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.07 8.01 -51.93 -0.42 0.65 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -28.33 347.89 -9.99 -38.32 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.38 Total: 5.09 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -2.02 Total: -27.07 kcal Atomic # 7 Polarization: -29.62 SS G_CDS: -0.46 Total: -30.08 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.34 Total: -5.37 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.33 -9.99 -38.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348251039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.120 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds