Wall clock time and date at job start Tue Mar 31 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00362 * 2 1 4 4 C 1.53003 * 109.49926 * 299.92201 * 3 2 1 5 5 C 1.53119 * 109.50128 * 59.99411 * 3 2 1 6 6 C 1.53117 * 109.15698 * 62.29442 * 5 3 2 7 7 C 1.53034 * 109.28175 * 57.65224 * 6 5 3 8 8 N 1.46852 * 109.52135 * 300.81820 * 7 6 5 9 9 C 1.46902 * 110.99672 * 185.83714 * 8 7 6 10 10 C 1.50702 * 109.47230 * 66.05269 * 9 8 7 11 11 C 1.38636 * 119.74593 * 269.72877 * 10 9 8 12 12 C 1.37623 * 120.24521 * 179.71976 * 11 10 9 13 13 C 1.40712 * 119.74377 * 0.57054 * 12 11 10 14 14 C 1.41400 * 120.24363 * 179.68527 * 13 12 11 15 15 H 1.08001 * 120.00225 * 155.30418 * 14 13 12 16 16 C 1.39946 * 119.99839 * 335.30245 * 14 13 12 17 17 N 1.30831 * 120.00014 * 342.23943 * 16 14 13 18 18 Si 1.86794 * 120.00069 * 162.23213 * 16 14 13 19 19 H 1.48508 * 109.46924 * 94.66506 * 18 16 14 20 20 H 1.48501 * 109.47416 * 214.66563 * 18 16 14 21 21 H 1.48502 * 109.47160 * 334.66844 * 18 16 14 22 22 C 1.40718 * 119.51400 * 359.69745 * 13 12 11 23 23 C 1.37614 * 119.74148 * 0.02562 * 22 13 12 24 24 C 1.46844 * 111.19629 * 61.74451 * 8 7 6 25 25 H 1.08996 * 109.47061 * 300.00056 * 1 2 3 26 26 H 1.09001 * 109.47150 * 60.00392 * 1 2 3 27 27 H 1.09005 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46936 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47092 * 300.07298 * 4 3 2 30 30 H 1.08998 * 109.47545 * 60.07833 * 4 3 2 31 31 H 1.08990 * 109.52711 * 302.38757 * 5 3 2 32 32 H 1.09001 * 109.51934 * 182.19453 * 5 3 2 33 33 H 1.09001 * 109.50411 * 297.70501 * 6 5 3 34 34 H 1.08997 * 109.53794 * 177.61350 * 6 5 3 35 35 H 1.09008 * 109.46559 * 180.80507 * 7 6 5 36 36 H 1.09000 * 109.45973 * 60.82928 * 7 6 5 37 37 H 1.08993 * 109.47489 * 306.04742 * 9 8 7 38 38 H 1.08999 * 109.46534 * 186.04563 * 9 8 7 39 39 H 1.07994 * 119.87633 * 359.96685 * 11 10 9 40 40 H 1.08001 * 120.12375 * 180.27241 * 12 11 10 41 41 H 0.96995 * 119.99922 * 180.02562 * 17 16 14 42 42 H 1.08001 * 120.12524 * 179.97438 * 22 13 12 43 43 H 1.08001 * 119.87435 * 180.02562 * 23 22 13 44 44 H 1.09004 * 109.46288 * 58.26956 * 24 8 7 45 45 H 1.09002 * 109.46365 * 178.24183 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5608 2.0646 -1.2500 5 6 1.5588 2.0660 1.2499 6 6 2.0633 1.3311 2.4949 7 6 3.5874 1.2104 2.4275 8 7 3.9683 0.4747 1.2150 9 6 5.4146 0.2191 1.1869 10 6 5.7805 -0.7211 2.3064 11 6 6.1331 -0.2104 3.5461 12 6 6.4635 -1.0598 4.5773 13 6 6.4540 -2.4510 4.3661 14 6 6.7981 -3.3331 5.4162 15 1 6.4278 -4.3477 5.4124 16 6 7.6184 -2.8916 6.4605 17 7 8.3432 -1.8126 6.3115 18 14 7.6785 -3.8425 8.0671 19 1 8.8189 -4.7934 8.0371 20 1 7.8536 -2.8950 9.1970 21 1 6.4108 -4.5954 8.2444 22 6 6.0998 -2.9578 3.1020 23 6 5.7675 -2.0899 2.0871 24 6 3.5359 1.1854 0.0050 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.0049 3.0602 -1.2498 29 1 1.8824 1.5228 -2.1394 30 1 0.4744 2.1523 -1.2510 31 1 0.4703 2.1161 1.2726 32 1 1.9705 3.0751 1.2307 33 1 1.6207 0.3357 2.5342 34 1 1.7816 1.8900 3.3872 35 1 3.9485 0.6749 3.3057 36 1 4.0297 2.2062 2.4021 37 1 5.9522 1.1591 1.3116 38 1 5.6856 -0.2305 0.2317 39 1 6.1448 0.8578 3.7043 40 1 6.7337 -0.6600 5.5435 41 1 8.9121 -1.5068 7.0352 42 1 6.0897 -4.0238 2.9289 43 1 5.4950 -2.4766 1.1162 44 1 3.9786 2.1814 -0.0090 45 1 3.8595 0.6319 -0.8765 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348251039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:50 Heat of formation + Delta-G solvation = -45.817019 kcal Electronic energy + Delta-G solvation = -23469.296956 eV Core-core repulsion = 20257.298794 eV Total energy + Delta-G solvation = -3211.998163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95135 -39.50686 -37.69309 -35.64672 -34.06591 -32.63249 -31.79341 -31.11706 -28.71347 -27.81067 -27.24641 -25.66638 -23.82600 -23.05041 -22.33216 -21.31207 -20.45630 -19.19749 -17.35919 -17.12329 -16.75363 -16.45506 -16.16891 -15.92246 -15.78330 -15.54462 -14.97677 -14.84106 -14.28486 -14.18109 -14.01530 -13.79779 -13.59794 -13.36688 -13.08582 -12.96551 -12.88298 -12.77626 -12.66045 -12.52332 -12.32714 -12.15961 -12.04313 -11.74794 -11.58162 -11.36585 -11.24173 -10.97700 -10.93013 -10.27050 -9.33498 -9.20063 -8.99114 -8.61996 -6.30702 0.96816 1.18802 1.37724 1.48602 1.54422 2.21754 2.68373 2.93784 3.20639 3.75631 3.81405 3.86846 4.00800 4.13953 4.31325 4.33463 4.40294 4.51423 4.54358 4.56158 4.59353 4.67209 4.67568 4.70907 4.78904 4.80217 4.84687 4.88023 5.00565 5.02413 5.06444 5.07553 5.18328 5.26500 5.34709 5.38926 5.42089 5.51010 5.74022 5.99227 6.12774 6.19892 6.30464 6.36812 6.42976 6.57167 6.73032 6.97113 7.07245 8.35291 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029382 B = 0.003448 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.724885 B = 8118.943261 C = 8187.497362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.387 6.387 3 C 0.115 3.885 4 C -0.171 4.171 5 C -0.139 4.139 6 C -0.108 4.108 7 C 0.057 3.943 8 N -0.535 5.535 9 C 0.126 3.874 10 C -0.191 4.191 11 C -0.093 4.093 12 C -0.189 4.189 13 C 0.080 3.920 14 C -0.505 4.505 15 H 0.072 0.928 16 C 0.036 3.964 17 N -0.827 5.827 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.261 1.261 22 C -0.245 4.245 23 C -0.073 4.073 24 C 0.067 3.933 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.287 0.713 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.055 0.945 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.551 10.135 -10.242 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.306 6.306 3 C 0.075 3.925 4 C -0.228 4.228 5 C -0.177 4.177 6 C -0.146 4.146 7 C -0.071 4.071 8 N -0.260 5.260 9 C -0.001 4.001 10 C -0.192 4.192 11 C -0.112 4.112 12 C -0.208 4.208 13 C 0.078 3.922 14 C -0.534 4.534 15 H 0.090 0.910 16 C -0.178 4.178 17 N -0.453 5.453 18 Si 0.801 3.199 19 H -0.187 1.187 20 H -0.189 1.189 21 H -0.184 1.184 22 C -0.265 4.265 23 C -0.092 4.092 24 C -0.060 4.060 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.127 0.873 44 H 0.073 0.927 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.496 9.677 -10.139 18.777 hybrid contribution 0.632 0.283 0.922 1.153 sum -11.864 9.960 -9.217 18.025 Atomic orbital electron populations 1.22887 0.81230 1.02894 1.00604 1.88093 1.19980 1.27584 1.94959 1.21604 0.92502 0.83538 0.94825 1.22329 1.02620 1.01023 0.96865 1.22179 1.01838 0.99404 0.94280 1.21446 0.94284 1.00639 0.98247 1.22068 0.96433 0.95271 0.93363 1.61824 1.14358 1.47805 1.01992 1.20644 0.86924 0.95907 0.96631 1.19257 1.10914 0.93586 0.95484 1.20698 0.99509 0.97551 0.93414 1.21220 1.07199 0.93734 0.98650 1.17935 0.89094 0.93123 0.92033 1.19819 1.28357 0.99099 1.06170 0.91030 1.26733 0.92340 0.95844 1.02923 1.69884 1.18780 1.22693 1.33946 0.85224 0.79659 0.78694 0.76299 1.18680 1.18888 1.18435 1.21155 1.13290 0.97950 0.94091 1.20606 0.97971 0.93145 0.97465 1.22139 0.93560 0.97201 0.93122 0.93642 0.92570 0.89928 0.90243 0.91760 0.90864 0.90135 0.90088 0.92856 0.90739 0.92476 0.95040 0.95063 0.90605 0.88180 0.88367 0.90225 0.88980 0.87344 0.92700 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.22 113.37 1.16 1.54 16 2 O -0.39 -10.32 9.68 -148.98 -1.44 -11.76 16 3 C 0.11 2.51 0.73 -10.74 -0.01 2.50 16 4 C -0.17 -2.62 8.26 71.98 0.59 -2.03 16 5 C -0.14 -2.80 4.49 30.67 0.14 -2.66 16 6 C -0.11 -2.83 5.94 30.64 0.18 -2.65 16 7 C 0.06 1.77 5.16 86.32 0.45 2.21 16 8 N -0.54 -17.30 4.53 -900.92 -4.08 -21.38 16 9 C 0.13 4.39 5.11 85.56 0.44 4.82 16 10 C -0.19 -8.38 4.91 -19.67 -0.10 -8.47 16 11 C -0.09 -4.40 7.85 22.22 0.17 -4.23 16 12 C -0.19 -10.28 8.70 22.73 0.20 -10.08 16 13 C 0.08 4.56 5.57 -21.29 -0.12 4.44 16 14 C -0.50 -28.52 9.05 23.46 0.21 -28.31 16 15 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 16 C 0.04 1.88 5.14 85.26 0.44 2.32 16 17 N -0.83 -44.54 10.97 21.83 0.24 -44.30 16 18 Si 0.98 39.47 29.59 68.60 2.03 41.50 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 22 C -0.25 -12.82 9.80 22.73 0.22 -12.60 16 23 C -0.07 -3.41 9.67 22.22 0.21 -3.20 16 24 C 0.07 1.70 4.43 86.33 0.38 2.08 16 25 H 0.05 0.80 6.37 -2.39 -0.02 0.79 16 26 H 0.06 0.83 6.42 -2.39 -0.02 0.82 16 27 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.94 6.55 -2.39 -0.02 0.93 16 31 H 0.08 1.37 6.43 -2.39 -0.02 1.35 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.63 7.80 -2.39 -0.02 1.61 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.16 5.77 -2.38 -0.01 2.15 16 36 H 0.03 0.90 8.14 -2.39 -0.02 0.89 16 37 H 0.03 1.03 8.06 -2.39 -0.02 1.01 16 38 H 0.08 2.47 7.92 -2.39 -0.02 2.45 16 39 H 0.10 4.27 7.96 -2.91 -0.02 4.25 16 40 H 0.10 5.60 6.18 -2.91 -0.02 5.58 16 41 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 42 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.08 1.93 8.01 -2.39 -0.02 1.91 16 Total: -1.00 -63.30 347.89 2.28 -61.02 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.95 Total: 29.24 kcal Atomic # 6 Polarization: -58.89 SS G_CDS: 4.57 Total: -54.31 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -3.84 Total: -65.68 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.44 Total: -11.76 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -63.30 2.28 -61.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348251039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.203 kcal (2) G-P(sol) polarization free energy of solvation -63.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds