Wall clock time and date at job start Tue Mar 31 2020 05:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99852 * 2 1 4 4 C 1.53007 * 109.50222 * 60.07831 * 3 2 1 5 5 C 1.53120 * 109.50399 * 300.00213 * 3 2 1 6 6 C 1.53123 * 109.16007 * 297.71211 * 5 3 2 7 7 C 1.53038 * 109.27729 * 302.34766 * 6 5 3 8 8 N 1.46851 * 109.52274 * 59.17668 * 7 6 5 9 9 C 1.46908 * 110.99645 * 174.16359 * 8 7 6 10 10 C 1.50695 * 109.47144 * 66.04496 * 9 8 7 11 11 C 1.38642 * 119.74679 * 90.00514 * 10 9 8 12 12 C 1.37614 * 120.24874 * 180.02562 * 11 10 9 13 13 C 1.40719 * 119.74423 * 359.97438 * 12 11 10 14 14 C 1.41395 * 120.24714 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99748 * 335.60207 * 14 13 12 16 16 C 1.39938 * 120.00091 * 155.87285 * 14 13 12 17 17 N 1.30819 * 120.00176 * 342.02811 * 16 14 13 18 18 Si 1.86802 * 120.00037 * 162.02561 * 16 14 13 19 19 H 1.48500 * 109.47127 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47287 * 120.00096 * 18 16 14 21 21 H 1.48498 * 109.47059 * 240.00299 * 18 16 14 22 22 C 1.40718 * 119.51234 * 0.28541 * 13 12 11 23 23 C 1.37618 * 119.74132 * 359.41994 * 22 13 12 24 24 C 1.46838 * 111.19931 * 298.25677 * 8 7 6 25 25 H 1.08998 * 109.46950 * 60.00252 * 1 2 3 26 26 H 1.09003 * 109.47028 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47223 * 299.99983 * 1 2 3 28 28 H 1.09002 * 109.46920 * 299.92196 * 4 3 2 29 29 H 1.08997 * 109.47017 * 59.91915 * 4 3 2 30 30 H 1.08999 * 109.46796 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.52209 * 177.80837 * 5 3 2 32 32 H 1.08996 * 109.57961 * 57.64417 * 5 3 2 33 33 H 1.08996 * 109.50619 * 182.40626 * 6 5 3 34 34 H 1.09001 * 109.53540 * 62.30451 * 6 5 3 35 35 H 1.09003 * 109.46351 * 299.16312 * 7 6 5 36 36 H 1.08992 * 109.45537 * 179.18908 * 7 6 5 37 37 H 1.09005 * 109.46924 * 306.04229 * 9 8 7 38 38 H 1.09006 * 109.46790 * 186.04924 * 9 8 7 39 39 H 1.07998 * 119.87546 * 359.96803 * 11 10 9 40 40 H 1.07995 * 120.12877 * 180.02562 * 12 11 10 41 41 H 0.97005 * 120.00336 * 179.97438 * 17 16 14 42 42 H 1.07999 * 120.12906 * 179.69972 * 22 13 12 43 43 H 1.08006 * 119.87636 * 180.32468 * 23 22 13 44 44 H 1.08997 * 109.46396 * 181.75748 * 24 8 7 45 45 H 1.08999 * 109.46639 * 301.73102 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5607 2.0647 1.2500 5 6 1.5588 2.0660 -1.2499 6 6 2.0633 1.3311 -2.4950 7 6 3.5874 1.2104 -2.4276 8 7 3.9683 0.4748 -1.2150 9 6 5.4147 0.2193 -1.1868 10 6 6.1534 1.5267 -1.0600 11 6 6.4508 2.0297 0.1972 12 6 7.1244 3.2228 0.3250 13 6 7.5121 3.9325 -0.8266 14 6 8.2052 5.1592 -0.7077 15 1 8.1052 5.7510 0.1902 16 6 9.0162 5.6091 -1.7556 17 7 9.4191 4.7720 -2.6767 18 14 9.5235 7.4049 -1.8392 19 1 8.9410 8.1381 -0.6867 20 1 11.0044 7.5038 -1.7908 21 1 9.0288 8.0005 -3.1064 22 6 7.2001 3.4151 -2.0975 23 6 6.5310 2.2170 -2.2014 24 6 3.5359 1.1855 -0.0050 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.4742 2.1522 1.2509 29 1 1.8823 1.5229 2.1395 30 1 2.0047 3.0602 1.2497 31 1 1.9705 3.0751 -1.2308 32 1 0.4703 2.1171 -1.2732 33 1 1.7817 1.8906 -3.3869 34 1 1.6209 0.3357 -2.5349 35 1 4.0298 2.2063 -2.4022 36 1 3.9483 0.6749 -3.3056 37 1 5.7136 -0.2790 -2.1090 38 1 5.6546 -0.4177 -0.3354 39 1 6.1518 1.4835 1.0797 40 1 7.3554 3.6126 1.3053 41 1 9.9810 5.0839 -3.4033 42 1 7.4885 3.9540 -2.9879 43 1 6.2950 1.8153 -3.1758 44 1 3.8595 0.6321 0.8765 45 1 3.9784 2.1815 0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348251054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:54 Heat of formation + Delta-G solvation = -32.726356 kcal Electronic energy + Delta-G solvation = -23893.522968 eV Core-core repulsion = 20682.092459 eV Total energy + Delta-G solvation = -3211.430509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88340 -37.94609 -36.25520 -33.92441 -32.69540 -31.55641 -29.91912 -29.26858 -27.43828 -26.53937 -26.13478 -24.36391 -22.45006 -21.42667 -20.65600 -19.89262 -19.19810 -17.33528 -16.21842 -15.50598 -15.38560 -15.28412 -15.07534 -14.50350 -14.10654 -13.98241 -13.63249 -13.35899 -13.24192 -12.73075 -12.66195 -12.35859 -12.08684 -12.00136 -11.81023 -11.74757 -11.58270 -11.29280 -11.22282 -11.04464 -10.78154 -10.67897 -10.51370 -10.44629 -10.38163 -9.90683 -9.72958 -9.42320 -9.30177 -9.15395 -7.72060 -7.47855 -7.31591 -6.79589 -4.38625 2.70708 3.02362 3.04822 3.09395 3.14722 3.89783 3.92623 4.39821 4.63907 4.79121 4.93124 5.11941 5.25262 5.33342 5.40240 5.47317 5.59996 5.65518 5.67682 5.73430 5.80551 5.88597 5.94441 6.01725 6.03275 6.10606 6.16079 6.21422 6.30715 6.33350 6.36330 6.39554 6.52073 6.60333 6.91460 7.03670 7.23526 7.31503 7.39613 7.56665 7.61031 7.65359 7.84119 8.02212 8.10636 8.26877 8.60976 8.86184 8.94272 10.14470 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.003922 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.651779 B = 7137.692049 C = 7287.768255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.358 6.358 3 C 0.119 3.881 4 C -0.178 4.178 5 C -0.145 4.145 6 C -0.110 4.110 7 C 0.054 3.946 8 N -0.522 5.522 9 C 0.114 3.886 10 C -0.250 4.250 11 C -0.079 4.079 12 C -0.228 4.228 13 C 0.113 3.887 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.272 1.272 22 C -0.167 4.167 23 C -0.088 4.088 24 C 0.074 3.926 25 H 0.039 0.961 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.280 0.720 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 -4.486 1.616 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.277 6.277 3 C 0.079 3.921 4 C -0.236 4.236 5 C -0.183 4.183 6 C -0.148 4.148 7 C -0.075 4.075 8 N -0.244 5.244 9 C -0.013 4.013 10 C -0.252 4.252 11 C -0.098 4.098 12 C -0.248 4.248 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.417 5.417 18 Si 0.730 3.270 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.197 1.197 22 C -0.187 4.187 23 C -0.107 4.107 24 C -0.054 4.054 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.331 -5.143 1.389 14.356 hybrid contribution 0.597 1.895 -0.084 1.989 sum -12.734 -3.248 1.305 13.206 Atomic orbital electron populations 1.22735 0.83058 1.01980 0.99585 1.88100 1.17935 1.26897 1.94735 1.21584 0.94122 0.83200 0.93205 1.22384 1.01381 1.01303 0.98504 1.22176 1.00484 0.99828 0.95810 1.21489 0.96210 1.00673 0.96458 1.22044 0.94533 0.97748 0.93128 1.62389 1.14542 1.46193 1.01266 1.20839 0.84927 0.94420 1.01128 1.19704 1.11513 1.00447 0.93561 1.20383 0.98553 0.95962 0.94941 1.20965 1.09158 0.97422 0.97233 1.17620 0.88719 0.91644 0.91015 1.19631 1.23685 1.04207 1.01749 0.90497 1.25906 0.94385 0.99342 0.94507 1.69835 1.25575 1.35533 1.10742 0.86303 0.78715 0.82608 0.79366 1.18404 1.19960 1.19690 1.21304 1.02216 0.96967 0.98171 1.20531 0.98776 0.95909 0.95514 1.21992 0.90756 0.98747 0.93928 0.94245 0.90286 0.94449 0.92368 0.91703 0.91330 0.91150 0.92007 0.92194 0.91175 0.93684 0.91500 0.91687 0.91702 0.89717 0.89216 0.90922 0.86640 0.89782 0.90922 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.22 101.05 1.03 1.28 16 2 O -0.36 -5.10 9.68 -35.23 -0.34 -5.44 16 3 C 0.12 1.63 0.73 -90.54 -0.07 1.57 16 4 C -0.18 -2.10 8.26 37.16 0.31 -1.79 16 5 C -0.15 -1.88 4.49 -26.61 -0.12 -2.00 16 6 C -0.11 -1.50 5.94 -26.65 -0.16 -1.65 16 7 C 0.05 0.86 4.82 -3.83 -0.02 0.84 16 8 N -0.52 -8.75 4.74 -236.11 -1.12 -9.87 16 9 C 0.11 2.04 5.55 -4.97 -0.03 2.01 16 10 C -0.25 -5.24 4.06 -104.33 -0.42 -5.66 16 11 C -0.08 -1.73 7.97 -39.66 -0.32 -2.05 16 12 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 13 C 0.11 2.97 5.57 -106.82 -0.60 2.37 16 14 C -0.46 -12.23 9.05 -37.74 -0.34 -12.57 16 15 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 16 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 17 N -0.79 -20.37 10.96 55.55 0.61 -19.76 16 18 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 C -0.17 -4.28 8.70 -38.87 -0.34 -4.61 16 23 C -0.09 -2.00 8.07 -39.66 -0.32 -2.32 16 24 C 0.07 1.20 3.50 -3.84 -0.01 1.18 16 25 H 0.04 0.39 6.37 -51.93 -0.33 0.06 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.35 6.42 -51.93 -0.33 0.02 16 28 H 0.06 0.59 6.55 -51.93 -0.34 0.25 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.97 7.80 -51.93 -0.41 0.57 16 35 H 0.04 0.82 6.55 -51.93 -0.34 0.48 16 36 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 37 H 0.06 1.13 8.00 -51.93 -0.42 0.72 16 38 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.08 1.66 8.01 -52.49 -0.42 1.24 16 40 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 42 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 43 H 0.08 1.76 8.03 -52.48 -0.42 1.34 16 44 H 0.07 1.19 8.12 -51.93 -0.42 0.76 16 45 H 0.06 1.12 6.46 -51.93 -0.34 0.78 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -27.14 344.18 -9.91 -37.05 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.35 Total: 6.84 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -1.87 Total: -27.51 kcal Atomic # 7 Polarization: -29.12 SS G_CDS: -0.51 Total: -29.64 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.34 Total: -5.44 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.14 -9.91 -37.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348251054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.326 kcal (2) G-P(sol) polarization free energy of solvation -27.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds