Wall clock time and date at job start Tue Mar 31 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99852 * 2 1 4 4 C 1.53007 * 109.50222 * 60.07831 * 3 2 1 5 5 C 1.53120 * 109.50399 * 300.00213 * 3 2 1 6 6 C 1.53123 * 109.16007 * 297.71211 * 5 3 2 7 7 C 1.53038 * 109.27729 * 302.34766 * 6 5 3 8 8 N 1.46851 * 109.52274 * 59.17668 * 7 6 5 9 9 C 1.46908 * 110.99645 * 174.16359 * 8 7 6 10 10 C 1.50695 * 109.47144 * 66.04496 * 9 8 7 11 11 C 1.38642 * 119.74679 * 90.00514 * 10 9 8 12 12 C 1.37614 * 120.24874 * 180.02562 * 11 10 9 13 13 C 1.40719 * 119.74423 * 359.97438 * 12 11 10 14 14 C 1.41395 * 120.24714 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99748 * 335.60207 * 14 13 12 16 16 C 1.39938 * 120.00091 * 155.87285 * 14 13 12 17 17 N 1.30819 * 120.00176 * 342.02811 * 16 14 13 18 18 Si 1.86802 * 120.00037 * 162.02561 * 16 14 13 19 19 H 1.48500 * 109.47127 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47287 * 120.00096 * 18 16 14 21 21 H 1.48498 * 109.47059 * 240.00299 * 18 16 14 22 22 C 1.40718 * 119.51234 * 0.28541 * 13 12 11 23 23 C 1.37618 * 119.74132 * 359.41994 * 22 13 12 24 24 C 1.46838 * 111.19931 * 298.25677 * 8 7 6 25 25 H 1.08998 * 109.46950 * 60.00252 * 1 2 3 26 26 H 1.09003 * 109.47028 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47223 * 299.99983 * 1 2 3 28 28 H 1.09002 * 109.46920 * 299.92196 * 4 3 2 29 29 H 1.08997 * 109.47017 * 59.91915 * 4 3 2 30 30 H 1.08999 * 109.46796 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.52209 * 177.80837 * 5 3 2 32 32 H 1.08996 * 109.57961 * 57.64417 * 5 3 2 33 33 H 1.08996 * 109.50619 * 182.40626 * 6 5 3 34 34 H 1.09001 * 109.53540 * 62.30451 * 6 5 3 35 35 H 1.09003 * 109.46351 * 299.16312 * 7 6 5 36 36 H 1.08992 * 109.45537 * 179.18908 * 7 6 5 37 37 H 1.09005 * 109.46924 * 306.04229 * 9 8 7 38 38 H 1.09006 * 109.46790 * 186.04924 * 9 8 7 39 39 H 1.07998 * 119.87546 * 359.96803 * 11 10 9 40 40 H 1.07995 * 120.12877 * 180.02562 * 12 11 10 41 41 H 0.97005 * 120.00336 * 179.97438 * 17 16 14 42 42 H 1.07999 * 120.12906 * 179.69972 * 22 13 12 43 43 H 1.08006 * 119.87636 * 180.32468 * 23 22 13 44 44 H 1.08997 * 109.46396 * 181.75748 * 24 8 7 45 45 H 1.08999 * 109.46639 * 301.73102 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5607 2.0647 1.2500 5 6 1.5588 2.0660 -1.2499 6 6 2.0633 1.3311 -2.4950 7 6 3.5874 1.2104 -2.4276 8 7 3.9683 0.4748 -1.2150 9 6 5.4147 0.2193 -1.1868 10 6 6.1534 1.5267 -1.0600 11 6 6.4508 2.0297 0.1972 12 6 7.1244 3.2228 0.3250 13 6 7.5121 3.9325 -0.8266 14 6 8.2052 5.1592 -0.7077 15 1 8.1052 5.7510 0.1902 16 6 9.0162 5.6091 -1.7556 17 7 9.4191 4.7720 -2.6767 18 14 9.5235 7.4049 -1.8392 19 1 8.9410 8.1381 -0.6867 20 1 11.0044 7.5038 -1.7908 21 1 9.0288 8.0005 -3.1064 22 6 7.2001 3.4151 -2.0975 23 6 6.5310 2.2170 -2.2014 24 6 3.5359 1.1855 -0.0050 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.4742 2.1522 1.2509 29 1 1.8823 1.5229 2.1395 30 1 2.0047 3.0602 1.2497 31 1 1.9705 3.0751 -1.2308 32 1 0.4703 2.1171 -1.2732 33 1 1.7817 1.8906 -3.3869 34 1 1.6209 0.3357 -2.5349 35 1 4.0298 2.2063 -2.4022 36 1 3.9483 0.6749 -3.3056 37 1 5.7136 -0.2790 -2.1090 38 1 5.6546 -0.4177 -0.3354 39 1 6.1518 1.4835 1.0797 40 1 7.3554 3.6126 1.3053 41 1 9.9810 5.0839 -3.4033 42 1 7.4885 3.9540 -2.9879 43 1 6.2950 1.8153 -3.1758 44 1 3.8595 0.6321 0.8765 45 1 3.9784 2.1815 0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348251054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:53 Heat of formation + Delta-G solvation = -47.380203 kcal Electronic energy + Delta-G solvation = -23894.158406 eV Core-core repulsion = 20682.092459 eV Total energy + Delta-G solvation = -3212.065947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09322 -39.54460 -37.65798 -35.62405 -34.07192 -32.67215 -31.65824 -31.09128 -28.72470 -27.85368 -27.17523 -25.96194 -23.79723 -23.04398 -22.22630 -21.48268 -20.38954 -19.23886 -17.33290 -17.21970 -16.72203 -16.44102 -16.13185 -16.00038 -15.70564 -15.32186 -15.23140 -14.94646 -14.32305 -14.18603 -13.89810 -13.81339 -13.60109 -13.32031 -13.11723 -12.98300 -12.93556 -12.88026 -12.71875 -12.46948 -12.25260 -12.15565 -11.99346 -11.74219 -11.55780 -11.52019 -11.27034 -11.06989 -10.94826 -10.27831 -9.36580 -9.27844 -9.06848 -8.65231 -6.35436 0.92578 1.12526 1.35642 1.47248 1.50872 2.18454 2.67525 2.92970 3.19291 3.72871 3.76174 3.85877 4.01474 4.16372 4.31046 4.35556 4.39842 4.52814 4.55219 4.56241 4.63166 4.65213 4.68160 4.77311 4.84174 4.87970 4.89835 4.97363 5.00252 5.03735 5.05452 5.06656 5.14466 5.21807 5.31684 5.35289 5.42591 5.45138 5.68550 5.94266 6.08266 6.13317 6.22470 6.33353 6.37926 6.52276 6.69071 6.92643 7.02277 8.30913 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.003922 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.651779 B = 7137.692049 C = 7287.768255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.380 6.380 3 C 0.121 3.879 4 C -0.174 4.174 5 C -0.144 4.144 6 C -0.105 4.105 7 C 0.053 3.947 8 N -0.517 5.517 9 C 0.117 3.883 10 C -0.232 4.232 11 C -0.077 4.077 12 C -0.244 4.244 13 C 0.082 3.918 14 C -0.503 4.503 15 H 0.072 0.928 16 C 0.036 3.964 17 N -0.825 5.825 18 Si 0.980 3.020 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.264 1.264 22 C -0.191 4.191 23 C -0.089 4.089 24 C 0.075 3.925 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.018 0.982 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.288 0.712 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.169 -5.060 1.744 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.299 6.299 3 C 0.081 3.919 4 C -0.232 4.232 5 C -0.182 4.182 6 C -0.142 4.142 7 C -0.075 4.075 8 N -0.239 5.239 9 C -0.011 4.011 10 C -0.235 4.235 11 C -0.095 4.095 12 C -0.264 4.264 13 C 0.079 3.921 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.451 5.451 18 Si 0.801 3.199 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.188 1.188 22 C -0.210 4.210 23 C -0.107 4.107 24 C -0.054 4.054 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.037 0.963 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.088 0.912 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.163 -5.734 1.523 16.282 hybrid contribution 1.054 1.907 -0.103 2.181 sum -14.109 -3.827 1.420 14.687 Atomic orbital electron populations 1.22931 0.81082 1.03242 1.00574 1.88051 1.20092 1.26822 1.94956 1.21477 0.92369 0.83660 0.94406 1.22350 1.02662 1.00679 0.97534 1.22177 1.01877 0.98978 0.95170 1.21454 0.94084 1.01159 0.97537 1.22091 0.96420 0.96114 0.92904 1.62441 1.13196 1.46362 1.01895 1.20878 0.85447 0.92641 1.02092 1.20078 1.09580 1.01162 0.92647 1.20646 0.97448 0.95153 0.96299 1.21151 1.09925 0.98396 0.96902 1.17941 0.89717 0.92475 0.91940 1.19855 1.25463 1.05148 1.02768 0.90947 1.26735 0.93802 1.03685 0.93646 1.69884 1.26239 1.37538 1.11446 0.85195 0.78582 0.76688 0.79465 1.18240 1.18980 1.18820 1.21247 1.04033 0.98337 0.97397 1.20725 0.97964 0.95074 0.96984 1.21975 0.92924 0.97044 0.93438 0.93415 0.89025 0.93194 0.90337 0.91693 0.91779 0.92164 0.89674 0.90641 0.90936 0.96321 0.91089 0.90829 0.90644 0.87181 0.88920 0.90179 0.88531 0.88220 0.91202 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.22 113.37 1.16 1.48 16 2 O -0.38 -9.83 9.68 -148.98 -1.44 -11.27 16 3 C 0.12 3.08 0.73 -10.74 -0.01 3.07 16 4 C -0.17 -3.76 8.26 71.98 0.59 -3.16 16 5 C -0.14 -3.44 4.49 30.68 0.14 -3.30 16 6 C -0.10 -2.61 5.94 30.65 0.18 -2.43 16 7 C 0.05 1.63 4.82 86.33 0.42 2.04 16 8 N -0.52 -16.57 4.74 -900.93 -4.27 -20.85 16 9 C 0.12 4.01 5.55 85.55 0.47 4.48 16 10 C -0.23 -9.65 4.06 -19.68 -0.08 -9.73 16 11 C -0.08 -3.33 7.97 22.22 0.18 -3.15 16 12 C -0.24 -12.13 9.80 22.73 0.22 -11.91 16 13 C 0.08 4.47 5.57 -21.29 -0.12 4.36 16 14 C -0.50 -27.66 9.05 23.46 0.21 -27.45 16 15 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 16 C 0.04 1.85 5.14 85.26 0.44 2.29 16 17 N -0.83 -43.80 10.96 21.82 0.24 -43.56 16 18 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 20 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 22 C -0.19 -10.13 8.70 22.73 0.20 -9.93 16 23 C -0.09 -4.07 8.07 22.22 0.18 -3.89 16 24 C 0.07 2.32 3.50 86.33 0.30 2.62 16 25 H 0.05 0.77 6.37 -2.39 -0.02 0.75 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 0.76 6.42 -2.39 -0.02 0.75 16 28 H 0.08 1.36 6.55 -2.39 -0.02 1.34 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.64 6.43 -2.39 -0.02 1.62 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.81 7.80 -2.39 -0.02 1.79 16 35 H 0.02 0.67 6.55 -2.39 -0.02 0.66 16 36 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 37 H 0.07 2.42 8.00 -2.38 -0.02 2.40 16 38 H 0.08 2.46 8.08 -2.38 -0.02 2.44 16 39 H 0.11 4.17 8.01 -2.91 -0.02 4.14 16 40 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.29 13.75 8.30 -92.70 -0.77 12.98 16 42 H 0.10 5.42 6.16 -2.91 -0.02 5.40 16 43 H 0.10 4.18 8.03 -2.91 -0.02 4.16 16 44 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 45 H 0.04 1.33 6.46 -2.39 -0.02 1.32 16 Total: -1.00 -59.87 344.18 2.00 -57.88 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.96 Total: 31.70 kcal Atomic # 6 Polarization: -59.10 SS G_CDS: 4.49 Total: -54.62 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -4.03 Total: -64.41 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.44 Total: -11.27 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -59.87 2.00 -57.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348251054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.497 kcal (2) G-P(sol) polarization free energy of solvation -59.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds