Wall clock time and date at job start Tue Mar 31 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38240 * 119.99645 * 0.50240 * 5 4 3 7 7 C 1.50698 * 119.99659 * 179.72727 * 6 5 4 8 8 H 1.09003 * 109.47112 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47457 * 60.02455 * 7 6 5 10 10 C 1.50703 * 109.47465 * 300.02380 * 7 6 5 11 11 O 1.21280 * 119.99687 * 0.02562 * 10 7 6 12 12 N 1.34767 * 120.00435 * 180.02562 * 10 7 6 13 13 C 1.46504 * 120.00235 * 179.97438 * 12 10 7 14 14 C 1.52998 * 109.47060 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47039 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47243 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00164 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00301 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00048 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00420 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47130 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47488 * 120.00018 * 20 18 16 23 23 H 1.48503 * 109.46917 * 240.00335 * 20 18 16 24 24 C 1.38227 * 120.00205 * 359.74956 * 6 5 4 25 25 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.99843 * 180.23314 * 5 4 3 33 33 H 1.09003 * 109.46818 * 300.00007 * 9 7 6 34 34 H 1.09001 * 109.47290 * 59.99484 * 9 7 6 35 35 H 1.08992 * 109.47505 * 179.97438 * 9 7 6 36 36 H 0.97001 * 119.99839 * 359.97438 * 12 10 7 37 37 H 1.08990 * 109.46753 * 299.99910 * 13 12 10 38 38 H 1.08996 * 109.46824 * 60.00021 * 13 12 10 39 39 H 1.08995 * 109.47618 * 300.00167 * 14 13 12 40 40 H 1.09003 * 109.47242 * 60.00032 * 14 13 12 41 41 H 1.08997 * 109.47497 * 300.00181 * 15 14 13 42 42 H 1.09000 * 109.47471 * 60.00190 * 15 14 13 43 43 H 0.96997 * 120.00226 * 179.97438 * 19 18 16 44 44 H 1.07996 * 120.00251 * 179.97438 * 24 6 5 45 45 H 1.07998 * 120.00407 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 -0.0001 8 1 3.5791 5.7902 1.0276 9 6 2.4505 6.3456 -0.7212 10 6 4.7853 5.5104 -0.7106 11 8 5.2744 4.5011 -1.1719 12 7 5.4290 6.6881 -0.8333 13 6 6.7198 6.7489 -1.5235 14 6 7.2305 8.1911 -1.5237 15 6 8.5789 8.2545 -2.2439 16 6 9.0817 9.6752 -2.2446 17 1 8.4982 10.4548 -1.7777 18 6 10.2867 9.9797 -2.8414 19 7 10.9972 9.0305 -3.4105 20 14 10.9103 11.7405 -2.8417 21 1 9.9322 12.6122 -2.1426 22 1 12.2184 11.8026 -2.1414 23 1 11.0759 12.2068 -4.2419 24 6 2.7238 3.3757 1.1971 25 6 2.2627 2.0725 1.1971 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0926 1.5598 -2.1325 32 1 2.9047 3.8844 -2.1326 33 1 2.3291 6.0030 -1.7489 34 1 1.4902 6.3002 -0.2074 35 1 2.8142 7.3730 -0.7209 36 1 5.0376 7.4954 -0.4647 37 1 7.4370 6.1091 -1.0096 38 1 6.5987 6.4066 -2.5512 39 1 6.5131 8.8306 -2.0378 40 1 7.3515 8.5339 -0.4960 41 1 9.2961 7.6151 -1.7294 42 1 8.4584 7.9117 -3.2716 43 1 11.8448 9.2447 -3.8307 44 1 2.9042 3.8847 2.1324 45 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349301189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:11 Heat of formation + Delta-G solvation = -69.866964 kcal Electronic energy + Delta-G solvation = -21839.254741 eV Core-core repulsion = 18626.213694 eV Total energy + Delta-G solvation = -3213.041046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34222 -39.91252 -37.02613 -35.98792 -35.21726 -33.73128 -32.69049 -31.79689 -29.51434 -28.51470 -25.97437 -25.06924 -23.72623 -23.58524 -22.31801 -21.75681 -20.66508 -18.59441 -17.96935 -17.53775 -16.85160 -16.58885 -16.41729 -16.32636 -15.78596 -15.41008 -14.89781 -14.68011 -14.56560 -14.34557 -14.25441 -13.98065 -13.77909 -13.62616 -13.30334 -13.27660 -12.91630 -12.78266 -12.55550 -12.51039 -12.36490 -12.26031 -12.01276 -11.69255 -11.63848 -11.62737 -11.56589 -11.22428 -10.72261 -10.57257 -10.08699 -9.75484 -9.40109 -8.20471 -6.32148 0.41807 0.55783 1.41376 1.41510 1.54866 1.64851 2.21674 2.42127 2.90989 3.13294 3.57740 3.78360 3.94062 3.99464 4.13061 4.15813 4.19835 4.23729 4.28885 4.42629 4.53122 4.54095 4.59205 4.69996 4.73669 4.84509 4.91135 4.93505 4.99607 5.06984 5.09667 5.15864 5.17848 5.23335 5.26908 5.39345 5.44344 5.52304 5.54978 5.69320 5.72441 5.75684 5.83195 6.15252 6.21094 6.60201 6.85838 7.28240 7.37666 8.91879 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.043788 B = 0.002245 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.284195 B =12471.813180 C =12755.885394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.100 4.100 6 C -0.086 4.086 7 C -0.062 4.062 8 H 0.131 0.869 9 C -0.137 4.137 10 C 0.508 3.492 11 O -0.582 6.582 12 N -0.713 5.713 13 C 0.131 3.869 14 C -0.101 4.101 15 C 0.022 3.978 16 C -0.539 4.539 17 H 0.068 0.932 18 C -0.006 4.006 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.116 4.116 25 C -0.128 4.128 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.416 0.584 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.069 0.931 41 H -0.009 1.009 42 H -0.009 1.009 43 H 0.263 0.737 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.620 -11.763 10.924 29.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.153 4.153 5 C -0.118 4.118 6 C -0.087 4.087 7 C -0.083 4.083 8 H 0.149 0.851 9 C -0.194 4.194 10 C 0.296 3.704 11 O -0.462 6.462 12 N -0.366 5.366 13 C 0.006 3.994 14 C -0.139 4.139 15 C -0.015 4.015 16 C -0.577 4.577 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.134 4.134 25 C -0.146 4.146 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.253 0.747 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.009 0.991 42 H 0.009 0.991 43 H 0.072 0.928 44 H 0.160 0.840 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.119 -12.494 10.503 29.123 hybrid contribution 0.975 0.955 -0.486 1.449 sum -23.144 -11.539 10.017 27.733 Atomic orbital electron populations 1.21713 0.93849 1.02401 1.01964 1.20589 0.96841 0.91413 1.03356 1.20178 0.98623 0.97184 0.92978 1.21165 1.00914 0.94750 0.98480 1.20956 0.97929 0.95340 0.97621 1.19494 1.00192 0.95139 0.93830 1.20338 0.91058 0.94461 1.02480 0.85143 1.21810 0.98721 0.98826 1.00087 1.21213 0.87232 0.82638 0.79339 1.90704 1.69151 1.36006 1.50294 1.45971 1.21628 1.10776 1.58185 1.21192 0.84200 0.97974 0.95987 1.21590 0.97469 0.93548 1.01264 1.18955 0.92366 0.95903 0.94308 1.21715 1.05059 0.95000 1.35972 0.91399 1.26058 0.97247 1.02079 0.94928 1.70125 1.14401 1.34747 1.38354 0.85341 0.78292 0.79154 0.77890 1.18079 1.20601 1.20613 1.21286 0.99231 0.95273 0.97563 1.21251 1.00248 0.94818 0.98247 0.91141 0.92469 0.93144 0.90112 0.91021 0.85662 0.87770 0.93155 0.89448 0.89997 0.74708 0.93600 0.93565 0.91223 0.91259 0.99101 0.99095 0.92831 0.83956 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.89 71.98 0.71 -0.92 16 2 C -0.08 -1.19 6.07 29.85 0.18 -1.01 16 3 C -0.09 -1.74 5.13 -19.87 -0.10 -1.84 16 4 C -0.14 -3.05 9.70 22.27 0.22 -2.84 16 5 C -0.10 -2.54 7.93 22.27 0.18 -2.36 16 6 C -0.09 -1.96 4.40 -19.87 -0.09 -2.05 16 7 C -0.06 -1.23 2.90 -12.29 -0.04 -1.26 16 8 H 0.13 1.84 7.88 -2.39 -0.02 1.82 16 9 C -0.14 -2.06 8.90 71.98 0.64 -1.42 16 10 C 0.51 14.68 7.02 87.66 0.62 15.29 16 11 O -0.58 -22.56 15.11 -3.03 -0.05 -22.61 16 12 N -0.71 -19.38 5.45 -463.08 -2.52 -21.91 16 13 C 0.13 4.67 5.67 86.38 0.49 5.16 16 14 C -0.10 -3.88 5.27 30.59 0.16 -3.71 16 15 C 0.02 1.17 4.97 29.85 0.15 1.32 16 16 C -0.54 -30.15 9.11 25.60 0.23 -29.91 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 19 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 20 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 C -0.12 -2.24 9.67 22.27 0.22 -2.03 16 25 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 30 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.10 2.82 7.52 -2.91 -0.02 2.80 16 33 H 0.05 0.90 7.39 -2.39 -0.02 0.88 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.97 7.57 -2.39 -0.02 0.95 16 36 H 0.42 8.25 7.89 -92.71 -0.73 7.51 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.14 2.00 7.95 -2.91 -0.02 1.98 16 45 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -73.03 372.45 4.20 -68.83 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.22 Total: 16.61 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 4.24 Total: -29.57 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.24 Total: -79.13 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.61 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -73.03 4.20 -68.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349301189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.037 kcal (2) G-P(sol) polarization free energy of solvation -73.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds