Wall clock time and date at job start Tue Mar 31 2020 06:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 C 1.53000 * 109.46864 * 180.02562 * 3 2 1 5 5 N 1.46895 * 110.56770 * 57.31992 * 4 3 2 6 6 C 1.46902 * 110.99808 * 57.67980 * 5 4 3 7 7 C 1.50707 * 109.47152 * 174.23770 * 6 5 4 8 8 C 1.38638 * 119.74656 * 269.73039 * 7 6 5 9 9 C 1.37623 * 120.24263 * 179.71711 * 8 7 6 10 10 C 1.40715 * 119.74466 * 0.57194 * 9 8 7 11 11 C 1.41390 * 120.24273 * 179.67786 * 10 9 8 12 12 H 1.08006 * 120.00489 * 205.72629 * 11 10 9 13 13 C 1.39950 * 120.00288 * 25.73032 * 11 10 9 14 14 N 1.30823 * 119.99419 * 17.67027 * 13 11 10 15 15 Si 1.86796 * 120.00272 * 197.67537 * 13 11 10 16 16 H 1.48502 * 109.47237 * 89.99875 * 15 13 11 17 17 H 1.48502 * 109.46753 * 209.99892 * 15 13 11 18 18 H 1.48499 * 109.47245 * 329.99468 * 15 13 11 19 19 C 1.40717 * 119.51348 * 359.70186 * 10 9 8 20 20 C 1.37618 * 119.74229 * 0.02562 * 19 10 9 21 21 C 1.54510 * 110.50766 * 179.97438 * 4 3 2 22 22 C 1.54484 * 104.06204 * 118.64538 * 21 4 3 23 23 O 1.44423 * 104.89903 * 335.96101 * 22 21 4 24 24 C 1.44698 * 105.13730 * 40.49937 * 23 22 21 25 25 H 1.09002 * 109.47337 * 299.99862 * 1 2 3 26 26 H 1.09000 * 109.47000 * 60.00569 * 1 2 3 27 27 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47337 * 240.00138 * 2 1 3 29 29 H 1.09000 * 109.47000 * 119.99431 * 2 1 3 30 30 H 1.09002 * 109.47031 * 59.99950 * 3 2 1 31 31 H 1.09001 * 109.46666 * 300.00044 * 3 2 1 32 32 H 1.00897 * 111.00060 * 293.72902 * 5 4 3 33 33 H 1.09002 * 109.47557 * 294.23700 * 6 5 4 34 34 H 1.08997 * 109.47222 * 54.24129 * 6 5 4 35 35 H 1.07990 * 119.87842 * 359.97438 * 8 7 6 36 36 H 1.07998 * 120.12603 * 180.27744 * 9 8 7 37 37 H 0.97004 * 119.99940 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.12475 * 180.02562 * 19 10 9 39 39 H 1.08003 * 119.87033 * 179.97438 * 20 19 10 40 40 H 1.08996 * 110.51376 * 0.02562 * 21 4 3 41 41 H 1.08999 * 110.51249 * 237.28590 * 21 4 3 42 42 H 1.08995 * 110.37139 * 94.84876 * 22 21 4 43 43 H 1.09002 * 110.37183 * 217.07745 * 22 21 4 44 44 H 1.08992 * 110.35316 * 200.67001 * 24 23 22 45 45 H 1.08996 * 110.44588 * 78.40593 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0855 0.7002 -1.1586 6 6 3.5834 1.2707 -2.4157 7 6 4.2415 0.5768 -3.5805 8 6 5.4252 1.0777 -4.1001 9 6 6.0380 0.4488 -5.1599 10 6 5.4522 -0.6997 -5.7237 11 6 6.0691 -1.3502 -6.8170 12 1 5.4744 -1.9353 -7.5030 13 6 7.4504 -1.2360 -7.0105 14 7 8.2176 -0.8374 -6.0286 15 14 8.1987 -1.6525 -8.6706 16 1 8.2299 -0.4342 -9.5192 17 1 9.5820 -2.1568 -8.4774 18 1 7.3791 -2.6976 -9.3348 19 6 4.2476 -1.1958 -5.1917 20 6 3.6555 -0.5540 -4.1280 21 6 4.1113 2.8898 -0.0013 22 6 4.9162 2.9900 1.3135 23 8 4.3484 1.9790 2.1745 24 6 4.1117 0.8397 1.3144 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.8577 -0.2804 -1.0901 33 1 2.5039 1.1311 -2.4725 34 1 3.8145 2.3353 -2.4494 35 1 5.8702 1.9622 -3.6691 36 1 6.9623 0.8381 -5.5603 37 1 9.1750 -0.7579 -6.1628 38 1 3.7896 -2.0768 -5.6165 39 1 2.7307 -0.9327 -3.7183 40 1 3.2889 3.6051 -0.0007 41 1 4.7615 3.0540 -0.8606 42 1 5.9705 2.7835 1.1296 43 1 4.7956 3.9781 1.7577 44 1 3.3718 0.1753 1.7604 45 1 5.0417 0.3018 1.1304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352822525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:22 Heat of formation + Delta-G solvation = -42.868882 kcal Electronic energy + Delta-G solvation = -23142.638256 eV Core-core repulsion = 19930.767934 eV Total energy + Delta-G solvation = -3211.870322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.06550 -37.70274 -36.31565 -34.09092 -33.17201 -31.16269 -29.88416 -29.26996 -28.60236 -26.40134 -25.74400 -23.53442 -22.87813 -21.29683 -20.96675 -19.88290 -19.07784 -17.28612 -16.71638 -16.14988 -15.49884 -15.28786 -15.13678 -14.55491 -14.38529 -14.01504 -13.74747 -13.43882 -13.22762 -12.96382 -12.71358 -12.41388 -12.24698 -11.94185 -11.87376 -11.64667 -11.58284 -11.42125 -11.22107 -11.05789 -10.88407 -10.74687 -10.66973 -10.55580 -10.36049 -10.33427 -9.71798 -9.58233 -9.35589 -9.13440 -8.07782 -7.43736 -7.29092 -6.75076 -4.34551 2.74811 3.06819 3.08388 3.10779 3.17899 3.93568 3.95638 4.35351 4.54935 4.64875 4.81451 4.86075 4.96312 5.06002 5.16586 5.34269 5.37315 5.57274 5.62282 5.69810 5.70433 5.73936 5.77509 5.82395 5.87644 5.91001 5.94737 6.00380 6.09541 6.16351 6.19902 6.29746 6.38453 6.43855 6.71938 6.96056 7.08407 7.29298 7.35920 7.41247 7.61809 7.69053 7.89162 8.06368 8.14760 8.31118 8.65388 8.90429 8.98599 10.19909 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.003508 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.085643 B = 7980.276081 C = 8778.593009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.140 4.140 4 C 0.082 3.918 5 N -0.665 5.665 6 C 0.123 3.877 7 C -0.210 4.210 8 C -0.080 4.080 9 C -0.166 4.166 10 C 0.113 3.887 11 C -0.466 4.466 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.792 5.792 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.226 4.226 20 C -0.085 4.085 21 C -0.144 4.144 22 C 0.048 3.952 23 O -0.379 6.379 24 C 0.053 3.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.341 0.659 33 H 0.023 0.977 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.280 0.720 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 4.857 10.784 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.180 4.180 4 C -0.010 4.010 5 N -0.298 5.298 6 C -0.004 4.004 7 C -0.212 4.212 8 C -0.099 4.099 9 C -0.185 4.185 10 C 0.111 3.889 11 C -0.496 4.496 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.417 5.417 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.246 4.246 20 C -0.104 4.104 21 C -0.182 4.182 22 C -0.029 4.029 23 O -0.297 6.297 24 C -0.025 4.025 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.219 5.258 11.066 14.220 hybrid contribution -0.407 -0.579 -0.973 1.203 sum -7.626 4.680 10.093 13.488 Atomic orbital electron populations 1.21728 0.95738 1.01544 1.01621 1.21612 0.96127 0.96875 1.02164 1.22254 0.95979 0.97255 1.02465 1.22281 0.92369 0.94260 0.92063 1.60880 1.61961 1.06517 1.00398 1.20593 0.94997 0.97826 0.87003 1.18889 0.99788 1.01322 1.01164 1.20474 0.94422 0.98388 0.96579 1.21270 1.01371 0.96744 0.99119 1.17610 0.90382 0.90042 0.90886 1.19597 0.92349 1.27910 1.09696 0.90536 1.25893 0.97492 0.93064 0.97659 1.69835 1.06158 1.34616 1.31114 0.86341 0.78416 0.79668 0.82454 1.19304 1.20338 1.18666 1.20938 1.00855 1.01888 1.00931 1.20340 0.97682 0.95470 0.96917 1.23022 1.00389 0.95669 0.99148 1.23357 0.97279 0.92363 0.89868 1.89134 1.83245 1.24843 1.32488 1.23578 1.00719 0.89201 0.88953 0.92929 0.92793 0.92780 0.91686 0.91865 0.91511 0.91416 0.83965 0.95915 0.91927 0.89635 0.86768 0.90907 0.89222 0.90019 0.91086 0.89190 0.92046 0.89615 0.89297 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 2 C -0.13 -1.39 5.37 -26.73 -0.14 -1.53 16 3 C -0.14 -1.58 3.58 -26.73 -0.10 -1.68 16 4 C 0.08 1.03 0.63 -130.04 -0.08 0.95 16 5 N -0.67 -10.00 5.80 -99.63 -0.58 -10.58 16 6 C 0.12 2.04 4.95 -4.97 -0.02 2.02 16 7 C -0.21 -4.39 5.46 -104.33 -0.57 -4.96 16 8 C -0.08 -1.83 9.67 -39.66 -0.38 -2.22 16 9 C -0.17 -4.28 8.69 -38.87 -0.34 -4.62 16 10 C 0.11 3.01 5.56 -106.83 -0.59 2.41 16 11 C -0.47 -12.38 9.05 -37.74 -0.34 -12.72 16 12 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 13 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 14 N -0.79 -20.56 11.03 55.55 0.61 -19.95 16 15 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 20 C -0.09 -1.85 9.67 -39.66 -0.38 -2.23 16 21 C -0.14 -1.74 5.82 -25.16 -0.15 -1.88 16 22 C 0.05 0.56 7.62 37.94 0.29 0.85 16 23 O -0.38 -5.07 11.67 -35.23 -0.41 -5.48 16 24 C 0.05 0.65 6.71 37.93 0.25 0.91 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.77 6.70 -51.93 -0.35 0.43 16 29 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.81 6.76 -51.93 -0.35 0.45 16 32 H 0.34 5.15 7.31 -39.29 -0.29 4.86 16 33 H 0.02 0.36 6.54 -51.93 -0.34 0.02 16 34 H 0.06 1.02 6.49 -51.93 -0.34 0.68 16 35 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.11 3.06 6.25 -52.49 -0.33 2.74 16 37 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 38 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.08 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 41 H 0.09 1.19 6.87 -51.93 -0.36 0.83 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.98 6.14 -51.93 -0.32 0.67 16 45 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -27.04 351.52 -9.94 -36.98 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.17 Total: 9.89 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.66 Total: -29.80 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.03 Total: -30.53 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.41 Total: -5.48 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.04 -9.94 -36.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352822525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.884 kcal (2) G-P(sol) polarization free energy of solvation -27.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds