Wall clock time and date at job start Tue Mar 31 2020 06:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 C 1.53000 * 109.46864 * 180.02562 * 3 2 1 5 5 N 1.46895 * 110.56770 * 57.31992 * 4 3 2 6 6 C 1.46902 * 110.99808 * 57.67980 * 5 4 3 7 7 C 1.50707 * 109.47152 * 174.23770 * 6 5 4 8 8 C 1.38638 * 119.74656 * 269.73039 * 7 6 5 9 9 C 1.37623 * 120.24263 * 179.71711 * 8 7 6 10 10 C 1.40715 * 119.74466 * 0.57194 * 9 8 7 11 11 C 1.41390 * 120.24273 * 179.67786 * 10 9 8 12 12 H 1.08006 * 120.00489 * 205.72629 * 11 10 9 13 13 C 1.39950 * 120.00288 * 25.73032 * 11 10 9 14 14 N 1.30823 * 119.99419 * 17.67027 * 13 11 10 15 15 Si 1.86796 * 120.00272 * 197.67537 * 13 11 10 16 16 H 1.48502 * 109.47237 * 89.99875 * 15 13 11 17 17 H 1.48502 * 109.46753 * 209.99892 * 15 13 11 18 18 H 1.48499 * 109.47245 * 329.99468 * 15 13 11 19 19 C 1.40717 * 119.51348 * 359.70186 * 10 9 8 20 20 C 1.37618 * 119.74229 * 0.02562 * 19 10 9 21 21 C 1.54510 * 110.50766 * 179.97438 * 4 3 2 22 22 C 1.54484 * 104.06204 * 118.64538 * 21 4 3 23 23 O 1.44423 * 104.89903 * 335.96101 * 22 21 4 24 24 C 1.44698 * 105.13730 * 40.49937 * 23 22 21 25 25 H 1.09002 * 109.47337 * 299.99862 * 1 2 3 26 26 H 1.09000 * 109.47000 * 60.00569 * 1 2 3 27 27 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47337 * 240.00138 * 2 1 3 29 29 H 1.09000 * 109.47000 * 119.99431 * 2 1 3 30 30 H 1.09002 * 109.47031 * 59.99950 * 3 2 1 31 31 H 1.09001 * 109.46666 * 300.00044 * 3 2 1 32 32 H 1.00897 * 111.00060 * 293.72902 * 5 4 3 33 33 H 1.09002 * 109.47557 * 294.23700 * 6 5 4 34 34 H 1.08997 * 109.47222 * 54.24129 * 6 5 4 35 35 H 1.07990 * 119.87842 * 359.97438 * 8 7 6 36 36 H 1.07998 * 120.12603 * 180.27744 * 9 8 7 37 37 H 0.97004 * 119.99940 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.12475 * 180.02562 * 19 10 9 39 39 H 1.08003 * 119.87033 * 179.97438 * 20 19 10 40 40 H 1.08996 * 110.51376 * 0.02562 * 21 4 3 41 41 H 1.08999 * 110.51249 * 237.28590 * 21 4 3 42 42 H 1.08995 * 110.37139 * 94.84876 * 22 21 4 43 43 H 1.09002 * 110.37183 * 217.07745 * 22 21 4 44 44 H 1.08992 * 110.35316 * 200.67001 * 24 23 22 45 45 H 1.08996 * 110.44588 * 78.40593 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0855 0.7002 -1.1586 6 6 3.5834 1.2707 -2.4157 7 6 4.2415 0.5768 -3.5805 8 6 5.4252 1.0777 -4.1001 9 6 6.0380 0.4488 -5.1599 10 6 5.4522 -0.6997 -5.7237 11 6 6.0691 -1.3502 -6.8170 12 1 5.4744 -1.9353 -7.5030 13 6 7.4504 -1.2360 -7.0105 14 7 8.2176 -0.8374 -6.0286 15 14 8.1987 -1.6525 -8.6706 16 1 8.2299 -0.4342 -9.5192 17 1 9.5820 -2.1568 -8.4774 18 1 7.3791 -2.6976 -9.3348 19 6 4.2476 -1.1958 -5.1917 20 6 3.6555 -0.5540 -4.1280 21 6 4.1113 2.8898 -0.0013 22 6 4.9162 2.9900 1.3135 23 8 4.3484 1.9790 2.1745 24 6 4.1117 0.8397 1.3144 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.8577 -0.2804 -1.0901 33 1 2.5039 1.1311 -2.4725 34 1 3.8145 2.3353 -2.4494 35 1 5.8702 1.9622 -3.6691 36 1 6.9623 0.8381 -5.5603 37 1 9.1750 -0.7579 -6.1628 38 1 3.7896 -2.0768 -5.6165 39 1 2.7307 -0.9327 -3.7183 40 1 3.2889 3.6051 -0.0007 41 1 4.7615 3.0540 -0.8606 42 1 5.9705 2.7835 1.1296 43 1 4.7956 3.9781 1.7577 44 1 3.3718 0.1753 1.7604 45 1 5.0417 0.3018 1.1304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352822525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:21 Heat of formation + Delta-G solvation = -57.299023 kcal Electronic energy + Delta-G solvation = -23143.263993 eV Core-core repulsion = 19930.767934 eV Total energy + Delta-G solvation = -3212.496060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.08959 -39.43720 -37.46222 -35.71333 -34.39611 -32.53265 -31.26919 -30.96045 -29.88900 -27.67352 -27.01673 -24.85183 -24.06576 -22.82905 -22.19398 -21.57975 -20.11877 -19.19459 -17.79335 -17.18297 -17.09368 -16.48539 -16.23336 -15.91933 -15.56448 -15.41147 -15.30264 -14.98062 -14.33263 -14.16024 -13.87508 -13.77089 -13.62850 -13.43870 -13.28919 -12.87786 -12.75837 -12.70503 -12.66095 -12.41390 -12.20514 -12.08574 -11.96998 -11.65742 -11.57495 -11.37152 -11.32576 -11.18683 -10.99581 -10.69259 -9.32626 -9.31660 -9.10069 -8.61641 -6.31630 0.97530 1.17799 1.37790 1.50832 1.51634 2.21403 2.69988 2.99673 3.35639 3.59764 3.76632 3.86788 3.92904 4.09828 4.20740 4.26473 4.34381 4.36546 4.46043 4.50288 4.59146 4.66814 4.72186 4.75299 4.84464 4.87576 4.90418 4.93778 4.97522 5.04986 5.07373 5.14480 5.18186 5.24738 5.32333 5.39356 5.43425 5.49170 5.72862 5.74147 5.98189 6.12543 6.22178 6.31822 6.42544 6.54326 6.73998 6.96924 7.07155 8.35623 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.003508 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.085643 B = 7980.276081 C = 8778.593009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.133 4.133 4 C 0.085 3.915 5 N -0.675 5.675 6 C 0.134 3.866 7 C -0.194 4.194 8 C -0.086 4.086 9 C -0.190 4.190 10 C 0.080 3.920 11 C -0.506 4.506 12 H 0.073 0.927 13 C 0.036 3.964 14 N -0.827 5.827 15 Si 0.980 3.020 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.259 1.259 19 C -0.242 4.242 20 C -0.084 4.084 21 C -0.144 4.144 22 C 0.046 3.954 23 O -0.391 6.391 24 C 0.054 3.946 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.341 0.659 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.287 0.713 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 5.382 11.884 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.172 4.172 4 C -0.007 4.007 5 N -0.307 5.307 6 C 0.006 3.994 7 C -0.195 4.195 8 C -0.105 4.105 9 C -0.209 4.209 10 C 0.078 3.922 11 C -0.536 4.536 12 H 0.091 0.909 13 C -0.179 4.179 14 N -0.453 5.453 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.183 1.183 19 C -0.262 4.262 20 C -0.103 4.103 21 C -0.182 4.182 22 C -0.030 4.030 23 O -0.309 6.309 24 C -0.023 4.023 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.161 0.839 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.518 5.788 12.184 15.953 hybrid contribution -0.097 -0.685 -1.148 1.340 sum -8.614 5.103 11.036 14.901 Atomic orbital electron populations 1.21714 0.94845 1.01993 1.01912 1.21599 0.96896 0.96314 1.01868 1.22179 0.94618 0.97738 1.02663 1.22308 0.93347 0.94137 0.90885 1.60743 1.62598 1.06788 1.00588 1.20448 0.95314 0.97597 0.86033 1.19346 0.98401 1.00325 1.01454 1.20714 0.95163 0.98769 0.95873 1.21223 1.01415 0.97540 1.00741 1.17942 0.91700 0.90778 0.91824 1.19831 0.93522 1.29564 1.10687 0.90930 1.26720 0.97367 0.92535 1.01236 1.69893 1.06679 1.35711 1.33052 0.85235 0.77699 0.79520 0.77430 1.18723 1.19281 1.18258 1.21155 1.00631 1.02484 1.01929 1.20671 0.98557 0.95244 0.95808 1.23036 1.00693 0.95691 0.98807 1.23464 0.96837 0.93041 0.89693 1.89127 1.83359 1.25318 1.33142 1.23580 1.00613 0.89198 0.88941 0.92070 0.93078 0.92316 0.92934 0.91230 0.90710 0.91733 0.83949 0.94360 0.91236 0.88163 0.88797 0.90296 0.88859 0.86794 0.89590 0.90477 0.92614 0.87473 0.87851 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.13 -2.39 5.37 30.60 0.16 -2.23 16 3 C -0.13 -2.59 3.58 30.60 0.11 -2.48 16 4 C 0.08 1.92 0.63 4.54 0.00 1.92 16 5 N -0.67 -18.94 5.80 -469.12 -2.72 -21.66 16 6 C 0.13 4.11 4.95 85.56 0.42 4.54 16 7 C -0.19 -7.85 5.46 -19.67 -0.11 -7.95 16 8 C -0.09 -3.98 9.67 22.22 0.21 -3.77 16 9 C -0.19 -10.13 8.69 22.73 0.20 -9.93 16 10 C 0.08 4.38 5.56 -21.29 -0.12 4.26 16 11 C -0.51 -27.96 9.05 23.46 0.21 -27.75 16 12 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 13 C 0.04 1.85 5.13 85.26 0.44 2.29 16 14 N -0.83 -44.40 11.03 21.83 0.24 -44.16 16 15 Si 0.98 39.01 29.59 68.60 2.03 41.04 16 16 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 17 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 19 C -0.24 -11.93 9.80 22.73 0.22 -11.71 16 20 C -0.08 -3.55 9.67 22.22 0.21 -3.33 16 21 C -0.14 -3.13 5.82 31.61 0.18 -2.95 16 22 C 0.05 0.98 7.62 72.49 0.55 1.53 16 23 O -0.39 -9.62 11.67 -148.98 -1.74 -11.36 16 24 C 0.05 1.22 6.71 72.48 0.49 1.71 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 1.11 6.70 -2.39 -0.02 1.10 16 29 H 0.07 1.20 6.42 -2.39 -0.02 1.18 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.32 6.76 -2.39 -0.02 1.31 16 32 H 0.34 9.62 7.31 -89.70 -0.66 8.96 16 33 H 0.04 1.08 6.54 -2.39 -0.02 1.07 16 34 H 0.07 2.08 6.49 -2.39 -0.02 2.06 16 35 H 0.10 4.23 8.06 -2.92 -0.02 4.20 16 36 H 0.09 5.30 6.25 -2.91 -0.02 5.29 16 37 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 38 H 0.09 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.11 4.04 8.06 -2.91 -0.02 4.01 16 40 H 0.09 1.61 7.73 -2.39 -0.02 1.59 16 41 H 0.08 1.90 6.87 -2.39 -0.02 1.88 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.10 2.03 6.14 -2.39 -0.01 2.02 16 45 H 0.06 1.49 8.06 -2.39 -0.02 1.47 16 Total: -1.00 -59.43 351.52 2.04 -57.39 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.32 Total: 36.31 kcal Atomic # 6 Polarization: -61.47 SS G_CDS: 3.91 Total: -57.56 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -2.48 Total: -65.82 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.74 Total: -11.36 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -59.43 2.04 -57.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352822525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.094 kcal (2) G-P(sol) polarization free energy of solvation -59.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds