Wall clock time and date at job start Tue Mar 31 2020 06:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00017 * 2 1 4 4 C 1.50693 * 109.47155 * 179.97438 * 3 2 1 5 5 C 1.38001 * 120.07651 * 0.02562 * 4 3 2 6 6 C 1.38316 * 120.14542 * 179.97438 * 5 4 3 7 7 C 1.38363 * 120.28701 * 359.97438 * 6 5 4 8 8 C 1.37954 * 120.14317 * 359.74178 * 7 6 5 9 9 C 1.39518 * 120.07326 * 180.02562 * 4 3 2 10 10 C 1.47810 * 120.14347 * 359.97438 * 9 4 3 11 11 C 1.32560 * 120.00180 * 138.26412 * 10 9 4 12 12 C 1.50707 * 120.00160 * 173.81244 * 11 10 9 13 13 C 1.50701 * 120.00117 * 353.81526 * 11 10 9 14 14 N 1.46892 * 109.47089 * 97.93040 * 13 11 10 15 15 C 1.46904 * 110.99871 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47362 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47262 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00315 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99663 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00408 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99602 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47210 * 60.00008 * 21 19 17 23 23 H 1.48502 * 109.47092 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47281 * 299.99714 * 21 19 17 25 25 H 1.08996 * 109.47565 * 59.99963 * 1 2 3 26 26 H 1.09005 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46733 * 299.99749 * 1 2 3 28 28 H 1.09003 * 109.47165 * 59.99885 * 3 2 1 29 29 H 1.08997 * 109.47259 * 300.00308 * 3 2 1 30 30 H 1.08003 * 119.92092 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.85370 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.93179 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.07392 * 180.27752 * 8 7 6 34 34 H 1.08005 * 120.00044 * 317.99984 * 10 9 4 35 35 H 1.08998 * 109.47108 * 90.00254 * 12 11 10 36 36 H 1.08997 * 109.46974 * 210.00345 * 12 11 10 37 37 H 1.09002 * 109.46794 * 330.00179 * 12 11 10 38 38 H 1.09001 * 109.46769 * 217.93472 * 13 11 10 39 39 H 1.09002 * 109.46862 * 337.93285 * 13 11 10 40 40 H 1.00902 * 111.00411 * 56.04884 * 14 13 11 41 41 H 1.09001 * 109.47296 * 299.99650 * 15 14 13 42 42 H 1.09000 * 109.47188 * 59.99968 * 15 14 13 43 43 H 1.09008 * 109.46695 * 300.00148 * 16 15 14 44 44 H 1.09000 * 109.47221 * 59.99711 * 16 15 14 45 45 H 0.96998 * 120.00031 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1076 -0.0586 0.0006 6 6 5.4863 -0.1695 0.0006 7 6 6.2777 0.9655 0.0002 8 6 5.6953 2.2161 -0.0057 9 6 4.3047 2.3348 0.0013 10 6 3.6741 3.6716 0.0008 11 6 4.1655 4.6366 0.7654 12 6 3.6126 6.0348 0.6625 13 6 5.2770 4.3355 1.7375 14 7 6.5648 4.7154 1.1418 15 6 7.6741 4.4350 2.0631 16 6 8.9958 4.8435 1.4094 17 6 10.1338 4.5552 2.3542 18 1 9.9344 4.1241 3.3241 19 6 11.4295 4.8428 1.9808 20 7 11.6723 5.3682 0.7999 21 14 12.8401 4.4861 3.1523 22 1 12.8702 3.0343 3.4633 23 1 14.1228 4.8825 2.5177 24 1 12.6488 5.2573 4.4068 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.4954 -0.9484 0.0005 31 1 5.9471 -1.1463 0.0010 32 1 7.3536 0.8722 0.0007 33 1 6.3140 3.1012 -0.0105 34 1 2.8156 3.8635 -0.6258 35 1 2.7854 6.1509 1.3627 36 1 4.3958 6.7538 0.9030 37 1 3.2569 6.2111 -0.3526 38 1 5.1200 4.9018 2.6556 39 1 5.2821 3.2694 1.9646 40 1 6.5623 5.6852 0.8630 41 1 7.5342 5.0017 2.9836 42 1 7.6957 3.3695 2.2921 43 1 9.1360 4.2771 0.4886 44 1 8.9739 5.9090 1.1807 45 1 12.5838 5.5708 0.5373 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352854912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:40 Heat of formation + Delta-G solvation = -16.380624 kcal Electronic energy + Delta-G solvation = -22554.800625 eV Core-core repulsion = 19344.078920 eV Total energy + Delta-G solvation = -3210.721705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.65061 -37.86443 -36.80108 -34.57198 -32.73874 -31.87635 -30.80001 -29.32392 -27.54606 -26.55284 -25.45977 -25.35892 -23.25728 -21.83712 -20.91456 -20.61185 -18.15093 -16.67970 -16.48193 -16.30314 -16.08812 -15.77301 -15.19794 -14.51846 -14.42908 -14.30286 -14.11080 -13.71304 -13.54586 -13.11904 -12.98987 -12.72117 -12.56636 -12.18865 -12.17105 -11.98059 -11.85712 -11.59141 -11.20843 -11.01801 -10.91412 -10.70446 -10.56662 -10.45124 -10.04594 -9.99936 -9.51706 -9.30843 -9.15514 -8.43793 -8.35540 -8.01804 -7.79154 -6.00016 -4.02679 1.21783 1.71156 2.43709 3.33434 3.37946 3.40308 3.52868 4.05603 4.44112 4.74109 4.81088 4.87249 5.03736 5.06225 5.09303 5.15114 5.24600 5.32195 5.34938 5.35996 5.36802 5.48267 5.58149 5.59142 5.71601 5.80067 5.89711 5.95625 6.05112 6.18164 6.31448 6.37295 6.46003 6.55667 6.65177 6.77514 6.94100 6.97126 7.01425 7.05534 7.35486 7.41434 7.70752 7.79559 7.92693 8.06263 8.42588 9.04278 9.61198 11.11240 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.003307 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.093778 B = 8466.011247 C = 9416.294171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.109 3.891 4 C -0.091 4.091 5 C -0.111 4.111 6 C -0.124 4.124 7 C -0.122 4.122 8 C -0.103 4.103 9 C -0.055 4.055 10 C -0.123 4.123 11 C -0.103 4.103 12 C -0.117 4.117 13 C 0.083 3.917 14 N -0.682 5.682 15 C 0.063 3.937 16 C 0.027 3.973 17 C -0.522 4.522 18 H 0.053 0.947 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.278 1.278 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.174 0.826 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.081 0.919 40 H 0.338 0.662 41 H 0.017 0.983 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.013 0.987 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.973 -6.060 -2.272 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.032 3.968 4 C -0.091 4.091 5 C -0.129 4.129 6 C -0.142 4.142 7 C -0.140 4.140 8 C -0.121 4.121 9 C -0.056 4.056 10 C -0.142 4.142 11 C -0.104 4.104 12 C -0.173 4.173 13 C -0.046 4.046 14 N -0.312 5.312 15 C -0.065 4.065 16 C -0.011 4.011 17 C -0.561 4.561 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.191 0.809 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.156 0.844 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.032 0.968 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.631 -6.746 -2.707 22.820 hybrid contribution 0.481 0.686 1.261 1.514 sum -21.150 -6.060 -1.446 22.049 Atomic orbital electron populations 1.22731 0.81058 1.02733 0.99966 1.87857 1.19519 1.27869 1.95454 1.21190 0.90744 0.84432 1.00384 1.19674 0.93146 0.93507 1.02805 1.20778 0.94424 0.97063 1.00596 1.21233 0.93743 0.98588 1.00675 1.21292 1.00271 0.92581 0.99894 1.22564 0.94044 1.00175 0.95271 1.18727 0.93275 0.91650 1.01904 1.21349 1.00056 0.92145 1.00618 1.22041 0.96462 0.94794 0.97060 1.20816 1.00868 0.93653 1.01990 1.21104 0.88197 1.01576 0.93704 1.60629 1.01641 1.26562 1.42402 1.22217 0.91450 0.99958 0.92875 1.19059 0.88963 0.96636 0.96410 1.21127 0.91501 1.41774 1.01706 0.92839 1.24988 0.98871 0.95217 0.95199 1.69957 1.20394 1.43300 1.19559 0.86663 0.81531 0.78776 0.81047 1.20207 1.21277 1.20318 0.94091 0.89623 0.94067 0.92175 0.92257 0.85711 0.86579 0.85835 0.80928 0.86858 0.91690 0.91483 0.91699 0.95150 0.90063 0.84450 0.96507 0.92154 0.95616 0.96835 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.34 9.19 -35.23 -0.32 -4.66 16 3 C 0.11 1.19 5.30 36.00 0.19 1.38 16 4 C -0.09 -1.23 5.91 -104.24 -0.62 -1.85 16 5 C -0.11 -1.51 9.37 -39.64 -0.37 -1.89 16 6 C -0.12 -1.72 10.04 -39.51 -0.40 -2.12 16 7 C -0.12 -1.88 10.03 -39.64 -0.40 -2.28 16 8 C -0.10 -1.63 7.62 -39.19 -0.30 -1.93 16 9 C -0.06 -0.79 4.96 -105.01 -0.52 -1.31 16 10 C -0.12 -1.53 8.51 -37.58 -0.32 -1.85 16 11 C -0.10 -1.29 5.50 -101.25 -0.56 -1.85 16 12 C -0.12 -1.17 10.04 36.01 0.36 -0.81 16 13 C 0.08 1.21 4.78 -4.98 -0.02 1.19 16 14 N -0.68 -11.54 4.11 -115.06 -0.47 -12.01 16 15 C 0.06 1.29 5.62 -3.82 -0.02 1.26 16 16 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 17 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.58 7.94 -51.93 -0.41 0.17 16 30 H 0.12 1.59 7.00 -52.48 -0.37 1.22 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.17 3.01 4.86 -52.49 -0.26 2.76 16 34 H 0.11 1.18 7.74 -52.48 -0.41 0.78 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 37 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 1.28 5.87 -51.93 -0.30 0.98 16 40 H 0.34 5.53 8.72 -39.29 -0.34 5.19 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -30.39 367.85 -9.50 -39.89 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.54 Total: 4.20 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.42 Total: -23.57 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.26 Total: -38.03 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.32 Total: -4.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.39 -9.50 -39.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352854912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.507 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds