Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00017 * 2 1 4 4 C 1.50693 * 109.47155 * 179.97438 * 3 2 1 5 5 C 1.38001 * 120.07651 * 0.02562 * 4 3 2 6 6 C 1.38316 * 120.14542 * 179.97438 * 5 4 3 7 7 C 1.38363 * 120.28701 * 359.97438 * 6 5 4 8 8 C 1.37954 * 120.14317 * 359.74178 * 7 6 5 9 9 C 1.39518 * 120.07326 * 180.02562 * 4 3 2 10 10 C 1.47810 * 120.14347 * 359.97438 * 9 4 3 11 11 C 1.32560 * 120.00180 * 138.26412 * 10 9 4 12 12 C 1.50707 * 120.00160 * 173.81244 * 11 10 9 13 13 C 1.50701 * 120.00117 * 353.81526 * 11 10 9 14 14 N 1.46892 * 109.47089 * 97.93040 * 13 11 10 15 15 C 1.46904 * 110.99871 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47362 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47262 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00315 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99663 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00408 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99602 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47210 * 60.00008 * 21 19 17 23 23 H 1.48502 * 109.47092 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47281 * 299.99714 * 21 19 17 25 25 H 1.08996 * 109.47565 * 59.99963 * 1 2 3 26 26 H 1.09005 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46733 * 299.99749 * 1 2 3 28 28 H 1.09003 * 109.47165 * 59.99885 * 3 2 1 29 29 H 1.08997 * 109.47259 * 300.00308 * 3 2 1 30 30 H 1.08003 * 119.92092 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.85370 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.93179 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.07392 * 180.27752 * 8 7 6 34 34 H 1.08005 * 120.00044 * 317.99984 * 10 9 4 35 35 H 1.08998 * 109.47108 * 90.00254 * 12 11 10 36 36 H 1.08997 * 109.46974 * 210.00345 * 12 11 10 37 37 H 1.09002 * 109.46794 * 330.00179 * 12 11 10 38 38 H 1.09001 * 109.46769 * 217.93472 * 13 11 10 39 39 H 1.09002 * 109.46862 * 337.93285 * 13 11 10 40 40 H 1.00902 * 111.00411 * 56.04884 * 14 13 11 41 41 H 1.09001 * 109.47296 * 299.99650 * 15 14 13 42 42 H 1.09000 * 109.47188 * 59.99968 * 15 14 13 43 43 H 1.09008 * 109.46695 * 300.00148 * 16 15 14 44 44 H 1.09000 * 109.47221 * 59.99711 * 16 15 14 45 45 H 0.96998 * 120.00031 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1076 -0.0586 0.0006 6 6 5.4863 -0.1695 0.0006 7 6 6.2777 0.9655 0.0002 8 6 5.6953 2.2161 -0.0057 9 6 4.3047 2.3348 0.0013 10 6 3.6741 3.6716 0.0008 11 6 4.1655 4.6366 0.7654 12 6 3.6126 6.0348 0.6625 13 6 5.2770 4.3355 1.7375 14 7 6.5648 4.7154 1.1418 15 6 7.6741 4.4350 2.0631 16 6 8.9958 4.8435 1.4094 17 6 10.1338 4.5552 2.3542 18 1 9.9344 4.1241 3.3241 19 6 11.4295 4.8428 1.9808 20 7 11.6723 5.3682 0.7999 21 14 12.8401 4.4861 3.1523 22 1 12.8702 3.0343 3.4633 23 1 14.1228 4.8825 2.5177 24 1 12.6488 5.2573 4.4068 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.4954 -0.9484 0.0005 31 1 5.9471 -1.1463 0.0010 32 1 7.3536 0.8722 0.0007 33 1 6.3140 3.1012 -0.0105 34 1 2.8156 3.8635 -0.6258 35 1 2.7854 6.1509 1.3627 36 1 4.3958 6.7538 0.9030 37 1 3.2569 6.2111 -0.3526 38 1 5.1200 4.9018 2.6556 39 1 5.2821 3.2694 1.9646 40 1 6.5623 5.6852 0.8630 41 1 7.5342 5.0017 2.9836 42 1 7.6957 3.3695 2.2921 43 1 9.1360 4.2771 0.4886 44 1 8.9739 5.9090 1.1807 45 1 12.5838 5.5708 0.5373 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352854912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = -32.701694 kcal Electronic energy + Delta-G solvation = -22555.508359 eV Core-core repulsion = 19344.078920 eV Total energy + Delta-G solvation = -3211.429439 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69612 -38.74292 -37.97805 -36.08588 -34.62604 -32.96029 -31.86081 -31.10329 -28.34949 -27.48106 -27.02431 -26.20821 -24.93593 -22.93092 -22.46848 -21.95607 -19.23543 -18.49062 -17.61927 -17.34458 -17.10807 -16.80119 -16.48636 -16.14668 -15.67181 -15.49662 -15.19812 -14.89696 -14.81851 -14.31247 -14.13230 -13.89171 -13.76830 -13.53559 -13.37042 -13.09250 -12.91544 -12.89462 -12.79525 -12.47956 -12.32974 -12.13418 -11.91318 -11.78980 -11.55569 -11.38813 -11.24522 -10.78182 -10.55539 -10.37819 -9.55152 -9.31821 -8.95923 -8.19914 -6.31067 0.15282 0.57917 1.39516 1.41767 1.42762 1.50689 2.40515 2.80325 2.94475 3.13523 3.48186 3.79219 3.94641 4.01570 4.19329 4.22066 4.33260 4.37069 4.45995 4.50502 4.54230 4.57771 4.63202 4.63524 4.69195 4.79840 4.81391 4.87256 4.90234 4.95704 5.06860 5.10629 5.17526 5.36868 5.44299 5.50457 5.64058 5.66902 5.69608 5.78574 5.82948 6.00204 6.11525 6.21265 6.25761 6.27685 6.53111 6.85855 7.37965 8.91726 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.003307 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.093778 B = 8466.011247 C = 9416.294171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.111 3.889 4 C -0.094 4.094 5 C -0.116 4.116 6 C -0.126 4.126 7 C -0.143 4.143 8 C -0.122 4.122 9 C -0.061 4.061 10 C -0.122 4.122 11 C -0.106 4.106 12 C -0.113 4.113 13 C 0.087 3.913 14 N -0.680 5.680 15 C 0.084 3.916 16 C 0.036 3.964 17 C -0.545 4.545 18 H 0.058 0.942 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.267 1.267 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.154 0.846 34 H 0.141 0.859 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.067 0.933 40 H 0.342 0.658 41 H 0.019 0.981 42 H 0.054 0.946 43 H -0.004 1.004 44 H -0.007 1.007 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.938 -6.250 -1.591 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.036 3.964 4 C -0.094 4.094 5 C -0.134 4.134 6 C -0.144 4.144 7 C -0.161 4.161 8 C -0.140 4.140 9 C -0.061 4.061 10 C -0.140 4.140 11 C -0.106 4.106 12 C -0.169 4.169 13 C -0.041 4.041 14 N -0.311 5.311 15 C -0.044 4.044 16 C -0.002 4.002 17 C -0.583 4.583 18 H 0.076 0.924 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.788 3.212 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.191 1.191 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.132 0.868 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.160 0.840 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.624 -6.937 -2.021 24.704 hybrid contribution 1.022 0.703 1.012 1.601 sum -22.602 -6.234 -1.009 23.467 Atomic orbital electron populations 1.22940 0.79145 1.03942 1.01017 1.87815 1.21609 1.27921 1.95662 1.21189 0.88845 0.84841 1.01563 1.20019 0.94921 0.93038 1.01419 1.20992 0.94344 0.97781 1.00291 1.21422 0.94028 0.98846 1.00080 1.21328 1.00122 0.93320 1.01365 1.22455 0.95044 0.99601 0.96907 1.18886 0.92605 0.93079 1.01561 1.21541 1.00670 0.91073 1.00751 1.22089 0.95637 0.96310 0.96583 1.20835 1.01192 0.91527 1.03389 1.21062 0.87584 1.00753 0.94712 1.60525 1.01979 1.26877 1.41758 1.21778 0.90449 0.99319 0.92882 1.18882 0.91385 0.94741 0.95181 1.21571 0.92676 1.41791 1.02293 0.92381 1.25928 1.01857 0.94829 0.96926 1.70091 1.21156 1.44266 1.21484 0.85530 0.77807 0.78987 0.78898 1.19322 1.20773 1.19145 0.92896 0.88463 0.93109 0.91170 0.90625 0.84671 0.84744 0.86812 0.82885 0.84142 0.89895 0.91940 0.90304 0.94477 0.91455 0.84006 0.96267 0.92783 0.98608 0.98883 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.23 9.19 -148.98 -1.37 -9.60 16 3 C 0.11 2.18 5.30 71.23 0.38 2.55 16 4 C -0.09 -2.41 5.91 -19.61 -0.12 -2.53 16 5 C -0.12 -3.08 9.37 22.23 0.21 -2.87 16 6 C -0.13 -3.49 10.04 22.32 0.22 -3.26 16 7 C -0.14 -4.59 10.03 22.23 0.22 -4.37 16 8 C -0.12 -4.00 7.62 22.52 0.17 -3.83 16 9 C -0.06 -1.70 4.96 -20.12 -0.10 -1.80 16 10 C -0.12 -2.79 8.51 23.65 0.20 -2.59 16 11 C -0.11 -2.47 5.50 -17.60 -0.10 -2.57 16 12 C -0.11 -1.98 10.04 71.24 0.72 -1.26 16 13 C 0.09 2.51 4.78 85.56 0.41 2.92 16 14 N -0.68 -23.54 4.11 -517.93 -2.13 -25.67 16 15 C 0.08 3.55 5.62 86.30 0.49 4.03 16 16 C 0.04 1.89 5.23 29.85 0.16 2.05 16 17 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 18 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 19 C 0.00 0.16 5.46 84.65 0.46 0.62 16 20 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 21 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.23 7.94 -2.39 -0.02 1.21 16 30 H 0.14 3.27 7.00 -2.91 -0.02 3.25 16 31 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 32 H 0.11 3.72 8.06 -2.91 -0.02 3.69 16 33 H 0.15 5.60 4.86 -2.91 -0.01 5.59 16 34 H 0.14 2.46 7.74 -2.91 -0.02 2.44 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 37 H 0.08 1.18 8.07 -2.39 -0.02 1.16 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 2.15 5.87 -2.39 -0.01 2.13 16 40 H 0.34 11.35 8.72 -89.69 -0.78 10.57 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 43 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -66.42 367.85 3.79 -62.63 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.18 Total: 25.10 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 4.80 Total: -42.38 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.84 Total: -82.34 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -1.37 Total: -9.60 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.42 3.79 -62.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352854912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.926 kcal (2) G-P(sol) polarization free energy of solvation -66.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds