Wall clock time and date at job start Tue Mar 31 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00240 * 2 1 4 4 C 1.50697 * 109.47010 * 180.02562 * 3 2 1 5 5 C 1.37992 * 120.07587 * 359.97438 * 4 3 2 6 6 C 1.38322 * 120.14708 * 179.97438 * 5 4 3 7 7 C 1.38372 * 120.28128 * 359.95791 * 6 5 4 8 8 C 1.37946 * 120.14462 * 0.02562 * 7 6 5 9 9 C 1.39516 * 120.07165 * 180.20438 * 4 3 2 10 10 C 1.47819 * 120.14057 * 0.04681 * 9 4 3 11 11 C 1.32565 * 119.99814 * 140.66781 * 10 9 4 12 12 C 1.50701 * 120.00283 * 353.34512 * 11 10 9 13 13 C 1.50700 * 119.99865 * 173.34543 * 11 10 9 14 14 N 1.46896 * 109.47302 * 94.99725 * 13 11 10 15 15 C 1.46897 * 111.00153 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47090 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47102 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99584 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00011 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99921 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00036 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46986 * 89.99838 * 21 19 17 23 23 H 1.48504 * 109.47226 * 209.99971 * 21 19 17 24 24 H 1.48504 * 109.47111 * 330.00134 * 21 19 17 25 25 H 1.08995 * 109.47509 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46688 * 300.00292 * 1 2 3 27 27 H 1.09000 * 109.46709 * 59.99756 * 1 2 3 28 28 H 1.08989 * 109.47370 * 59.99470 * 3 2 1 29 29 H 1.09001 * 109.46711 * 299.99801 * 3 2 1 30 30 H 1.08002 * 119.93053 * 359.97438 * 5 4 3 31 31 H 1.07994 * 119.85853 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.92564 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.07487 * 179.97438 * 8 7 6 34 34 H 1.07996 * 119.99780 * 320.66557 * 10 9 4 35 35 H 1.09001 * 109.47395 * 88.35276 * 12 11 10 36 36 H 1.08998 * 109.47118 * 208.35692 * 12 11 10 37 37 H 1.08998 * 109.46679 * 328.35151 * 12 11 10 38 38 H 1.09004 * 109.47086 * 214.99845 * 13 11 10 39 39 H 1.09007 * 109.46901 * 334.99573 * 13 11 10 40 40 H 1.00904 * 110.99748 * 303.95678 * 14 13 11 41 41 H 1.08994 * 109.47373 * 300.00343 * 15 14 13 42 42 H 1.08999 * 109.47018 * 60.00414 * 15 14 13 43 43 H 1.08994 * 109.47516 * 299.99937 * 16 15 14 44 44 H 1.09003 * 109.47168 * 60.00348 * 16 15 14 45 45 H 0.96998 * 119.99654 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1076 -0.0587 -0.0006 6 6 5.4863 -0.1697 -0.0017 7 6 6.2777 0.9654 -0.0038 8 6 5.6954 2.2159 -0.0042 9 6 4.3049 2.3347 0.0036 10 6 3.6742 3.6716 0.0097 11 6 4.1951 4.6468 0.7410 12 6 5.3373 4.3567 1.6803 13 6 3.6451 6.0457 0.6332 14 7 2.6468 6.2621 1.6888 15 6 2.0881 7.6187 1.6149 16 6 1.0542 7.8057 2.7271 17 6 0.4805 9.1972 2.6510 18 1 0.8192 9.8797 1.8855 19 6 -0.4766 9.5990 3.5584 20 7 -0.9776 10.8132 3.4916 21 14 -1.0629 8.4182 4.8818 22 1 -0.2119 8.5665 6.0898 23 1 -2.4737 8.7252 5.2295 24 1 -0.9691 7.0243 4.3784 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8898 29 1 1.6887 1.8463 -0.8900 30 1 3.4954 -0.9485 0.0004 31 1 5.9471 -1.1464 -0.0012 32 1 7.3537 0.8720 -0.0050 33 1 6.3141 3.1010 -0.0054 34 1 2.7891 3.8538 -0.5817 35 1 6.2822 4.4638 1.1475 36 1 5.3090 5.0579 2.5143 37 1 5.2469 3.3384 2.0585 38 1 4.4563 6.7649 0.7472 39 1 3.1769 6.1778 -0.3423 40 1 1.9167 5.5670 1.6440 41 1 2.8886 8.3484 1.7360 42 1 1.6091 7.7621 0.6464 43 1 0.2537 7.0760 2.6056 44 1 1.5327 7.6622 3.6960 45 1 -1.6512 11.0956 4.1298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352854915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:42 Heat of formation + Delta-G solvation = -16.872099 kcal Electronic energy + Delta-G solvation = -22043.431169 eV Core-core repulsion = 18832.688153 eV Total energy + Delta-G solvation = -3210.743017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92740 -37.89702 -37.04722 -34.84342 -32.79765 -32.31575 -30.90941 -29.43924 -27.80977 -27.10210 -25.78664 -25.35157 -23.22575 -22.11905 -21.22736 -20.44164 -18.38586 -16.87071 -16.77795 -16.62857 -16.14617 -15.80307 -15.18818 -15.10134 -14.65037 -14.53037 -14.23634 -13.99537 -13.59979 -13.36743 -13.10790 -12.91155 -12.69299 -12.52861 -12.33813 -11.96783 -11.92080 -11.74003 -11.51264 -11.28776 -11.13606 -11.01478 -10.74969 -10.18119 -10.12820 -9.91689 -9.81153 -9.56222 -9.24494 -8.86733 -8.55066 -8.25591 -7.95382 -6.05887 -4.04427 0.88537 1.25398 2.23083 3.31822 3.38635 3.43180 3.43451 3.65460 4.44905 4.50881 4.62027 4.82050 4.83481 4.88213 4.92565 5.00216 5.04428 5.09129 5.18280 5.27547 5.28706 5.32542 5.39317 5.46927 5.59524 5.63753 5.72630 5.77051 5.81460 5.96348 6.01680 6.15293 6.21784 6.22703 6.35336 6.37658 6.53951 6.73427 6.76380 6.84963 6.91661 7.09153 7.35974 7.55605 7.71611 7.87038 8.51391 8.98023 9.56442 11.07443 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.003109 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.111681 B = 9002.964467 C =10191.684747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.103 3.897 4 C -0.083 4.083 5 C -0.098 4.098 6 C -0.127 4.127 7 C -0.122 4.122 8 C -0.113 4.113 9 C -0.036 4.036 10 C -0.149 4.149 11 C -0.079 4.079 12 C -0.120 4.120 13 C 0.089 3.911 14 N -0.688 5.688 15 C 0.073 3.927 16 C -0.009 4.009 17 C -0.522 4.522 18 H 0.071 0.929 19 C 0.067 3.933 20 N -0.904 5.904 21 Si 0.883 3.117 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.266 1.266 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.335 0.665 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.013 0.987 44 H 0.021 0.979 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.412 -23.228 -8.723 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C 0.027 3.973 4 C -0.083 4.083 5 C -0.116 4.116 6 C -0.145 4.145 7 C -0.140 4.140 8 C -0.131 4.131 9 C -0.036 4.036 10 C -0.168 4.168 11 C -0.080 4.080 12 C -0.176 4.176 13 C -0.040 4.040 14 N -0.319 5.319 15 C -0.055 4.055 16 C -0.047 4.047 17 C -0.560 4.560 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.710 3.290 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.152 0.848 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.031 0.969 44 H 0.039 0.961 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.860 -23.075 -8.158 27.196 hybrid contribution -1.256 -0.283 -0.099 1.292 sum 10.603 -23.358 -8.257 26.948 Atomic orbital electron populations 1.22761 0.80553 1.02840 1.00397 1.87807 1.19960 1.27603 1.95552 1.21234 0.90174 0.84797 1.01095 1.19751 0.93775 0.93220 1.01557 1.20909 0.94466 0.97400 0.98853 1.21187 0.93782 0.98496 1.01029 1.21090 0.99747 0.92531 1.00676 1.21397 0.93744 0.97816 1.00096 1.18710 0.92854 0.92186 0.99857 1.21427 1.00623 0.91537 1.03194 1.22137 0.96409 0.94413 0.94993 1.21038 0.95711 1.02466 0.98413 1.21003 0.96329 0.93149 0.93474 1.60633 1.18173 1.05874 1.47233 1.21989 0.97580 0.87349 0.98624 1.19542 0.93465 0.97354 0.94354 1.21072 1.22041 0.97050 1.15880 0.91104 1.25012 0.95929 0.95039 0.97460 1.69918 1.29269 1.17861 1.37224 0.86730 0.77829 0.82051 0.82366 1.20203 1.21485 1.19023 0.89522 0.93699 0.93898 0.91476 0.91914 0.85194 0.86250 0.86147 0.85310 0.86559 0.91532 0.90940 0.91467 0.90236 0.94889 0.84756 0.91628 0.95958 0.96915 0.96066 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.15 9.19 -35.23 -0.32 -4.47 16 3 C 0.10 1.08 5.28 36.00 0.19 1.27 16 4 C -0.08 -0.94 5.91 -104.24 -0.62 -1.55 16 5 C -0.10 -1.05 9.37 -39.64 -0.37 -1.42 16 6 C -0.13 -1.19 10.04 -39.50 -0.40 -1.59 16 7 C -0.12 -1.12 10.03 -39.64 -0.40 -1.52 16 8 C -0.11 -1.13 7.79 -39.20 -0.31 -1.44 16 9 C -0.04 -0.40 5.04 -105.01 -0.53 -0.93 16 10 C -0.15 -1.68 8.54 -37.57 -0.32 -2.00 16 11 C -0.08 -0.94 5.50 -101.26 -0.56 -1.49 16 12 C -0.12 -1.29 8.28 36.01 0.30 -1.00 16 13 C 0.09 1.21 5.84 -4.98 -0.03 1.18 16 14 N -0.69 -11.39 6.49 -115.06 -0.75 -12.13 16 15 C 0.07 1.45 5.62 -3.82 -0.02 1.43 16 16 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 17 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 18 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 21 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.71 8.14 -51.94 -0.42 0.29 16 29 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 30 H 0.13 1.33 7.00 -52.49 -0.37 0.96 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.13 1.15 5.76 -52.49 -0.30 0.84 16 34 H 0.12 1.26 7.66 -52.49 -0.40 0.86 16 35 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 36 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 37 H 0.07 0.74 6.52 -51.93 -0.34 0.40 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.44 8.03 -51.93 -0.42 0.02 16 40 H 0.34 5.33 8.72 -39.29 -0.34 4.99 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 44 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -31.46 366.13 -9.45 -40.91 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.51 Total: 1.61 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -2.49 Total: -21.48 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.03 Total: -39.36 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.32 Total: -4.47 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.46 -9.45 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352854915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.042 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds