Wall clock time and date at job start Tue Mar 31 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00240 * 2 1 4 4 C 1.50697 * 109.47010 * 180.02562 * 3 2 1 5 5 C 1.37992 * 120.07587 * 359.97438 * 4 3 2 6 6 C 1.38322 * 120.14708 * 179.97438 * 5 4 3 7 7 C 1.38372 * 120.28128 * 359.95791 * 6 5 4 8 8 C 1.37946 * 120.14462 * 0.02562 * 7 6 5 9 9 C 1.39516 * 120.07165 * 180.20438 * 4 3 2 10 10 C 1.47819 * 120.14057 * 0.04681 * 9 4 3 11 11 C 1.32565 * 119.99814 * 140.66781 * 10 9 4 12 12 C 1.50701 * 120.00283 * 353.34512 * 11 10 9 13 13 C 1.50700 * 119.99865 * 173.34543 * 11 10 9 14 14 N 1.46896 * 109.47302 * 94.99725 * 13 11 10 15 15 C 1.46897 * 111.00153 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47090 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47102 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99584 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00011 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99921 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00036 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46986 * 89.99838 * 21 19 17 23 23 H 1.48504 * 109.47226 * 209.99971 * 21 19 17 24 24 H 1.48504 * 109.47111 * 330.00134 * 21 19 17 25 25 H 1.08995 * 109.47509 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46688 * 300.00292 * 1 2 3 27 27 H 1.09000 * 109.46709 * 59.99756 * 1 2 3 28 28 H 1.08989 * 109.47370 * 59.99470 * 3 2 1 29 29 H 1.09001 * 109.46711 * 299.99801 * 3 2 1 30 30 H 1.08002 * 119.93053 * 359.97438 * 5 4 3 31 31 H 1.07994 * 119.85853 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.92564 * 180.02562 * 7 6 5 33 33 H 1.07996 * 120.07487 * 179.97438 * 8 7 6 34 34 H 1.07996 * 119.99780 * 320.66557 * 10 9 4 35 35 H 1.09001 * 109.47395 * 88.35276 * 12 11 10 36 36 H 1.08998 * 109.47118 * 208.35692 * 12 11 10 37 37 H 1.08998 * 109.46679 * 328.35151 * 12 11 10 38 38 H 1.09004 * 109.47086 * 214.99845 * 13 11 10 39 39 H 1.09007 * 109.46901 * 334.99573 * 13 11 10 40 40 H 1.00904 * 110.99748 * 303.95678 * 14 13 11 41 41 H 1.08994 * 109.47373 * 300.00343 * 15 14 13 42 42 H 1.08999 * 109.47018 * 60.00414 * 15 14 13 43 43 H 1.08994 * 109.47516 * 299.99937 * 16 15 14 44 44 H 1.09003 * 109.47168 * 60.00348 * 16 15 14 45 45 H 0.96998 * 119.99654 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1076 -0.0587 -0.0006 6 6 5.4863 -0.1697 -0.0017 7 6 6.2777 0.9654 -0.0038 8 6 5.6954 2.2159 -0.0042 9 6 4.3049 2.3347 0.0036 10 6 3.6742 3.6716 0.0097 11 6 4.1951 4.6468 0.7410 12 6 5.3373 4.3567 1.6803 13 6 3.6451 6.0457 0.6332 14 7 2.6468 6.2621 1.6888 15 6 2.0881 7.6187 1.6149 16 6 1.0542 7.8057 2.7271 17 6 0.4805 9.1972 2.6510 18 1 0.8192 9.8797 1.8855 19 6 -0.4766 9.5990 3.5584 20 7 -0.9776 10.8132 3.4916 21 14 -1.0629 8.4182 4.8818 22 1 -0.2119 8.5665 6.0898 23 1 -2.4737 8.7252 5.2295 24 1 -0.9691 7.0243 4.3784 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8898 29 1 1.6887 1.8463 -0.8900 30 1 3.4954 -0.9485 0.0004 31 1 5.9471 -1.1464 -0.0012 32 1 7.3537 0.8720 -0.0050 33 1 6.3141 3.1010 -0.0054 34 1 2.7891 3.8538 -0.5817 35 1 6.2822 4.4638 1.1475 36 1 5.3090 5.0579 2.5143 37 1 5.2469 3.3384 2.0585 38 1 4.4563 6.7649 0.7472 39 1 3.1769 6.1778 -0.3423 40 1 1.9167 5.5670 1.6440 41 1 2.8886 8.3484 1.7360 42 1 1.6091 7.7621 0.6464 43 1 0.2537 7.0760 2.6056 44 1 1.5327 7.6622 3.6960 45 1 -1.6512 11.0956 4.1298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352854915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:42 Heat of formation + Delta-G solvation = -35.548635 kcal Electronic energy + Delta-G solvation = -22044.241045 eV Core-core repulsion = 18832.688153 eV Total energy + Delta-G solvation = -3211.552892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69741 -38.69821 -38.14894 -36.18081 -34.71360 -33.10831 -32.25161 -30.77691 -28.56739 -27.97869 -26.98831 -26.28312 -24.76052 -22.95044 -22.33473 -21.94180 -19.28842 -18.96494 -17.64103 -17.38417 -16.94399 -16.85923 -16.40923 -16.11947 -15.99078 -15.49233 -15.37037 -15.17493 -14.78873 -14.71640 -14.38944 -14.06309 -13.73327 -13.49273 -13.42564 -13.11626 -12.94777 -12.81129 -12.68760 -12.58404 -12.31008 -11.96424 -11.90760 -11.83187 -11.69629 -11.44094 -11.42792 -10.85138 -10.78122 -10.47545 -9.62401 -9.37923 -9.01409 -8.31070 -6.35731 0.08706 0.50015 1.36704 1.37116 1.37704 1.50402 2.35734 2.73227 2.89177 3.04592 3.40116 3.76076 3.87822 3.97157 4.10527 4.17984 4.20825 4.31220 4.39253 4.43445 4.46726 4.51771 4.56268 4.60521 4.65712 4.72802 4.75381 4.83941 4.84177 4.90248 4.95205 5.05754 5.15454 5.23129 5.26979 5.43274 5.47876 5.57088 5.61384 5.62512 5.70991 5.88620 6.09053 6.12435 6.18404 6.24062 6.49013 6.72931 7.29328 8.85618 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016504 B = 0.003109 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.111681 B = 9002.964467 C =10191.684747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.104 3.896 4 C -0.098 4.098 5 C -0.112 4.112 6 C -0.127 4.127 7 C -0.124 4.124 8 C -0.117 4.117 9 C -0.053 4.053 10 C -0.137 4.137 11 C -0.089 4.089 12 C -0.114 4.114 13 C 0.092 3.908 14 N -0.688 5.688 15 C 0.086 3.914 16 C -0.004 4.004 17 C -0.535 4.535 18 H 0.033 0.967 19 C 0.005 3.995 20 N -0.951 5.951 21 Si 0.954 3.046 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.247 1.247 25 H 0.102 0.898 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.340 0.660 41 H 0.058 0.942 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.021 0.979 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.372 -25.716 -8.435 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.028 3.972 4 C -0.098 4.098 5 C -0.130 4.130 6 C -0.145 4.145 7 C -0.142 4.142 8 C -0.134 4.134 9 C -0.053 4.053 10 C -0.157 4.157 11 C -0.089 4.089 12 C -0.170 4.170 13 C -0.036 4.036 14 N -0.319 5.319 15 C -0.043 4.043 16 C -0.042 4.042 17 C -0.573 4.573 18 H 0.051 0.949 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.777 3.223 22 H -0.193 1.193 23 H -0.209 1.209 24 H -0.171 1.171 25 H 0.120 0.880 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.158 0.842 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.834 -25.582 -7.886 29.687 hybrid contribution -1.517 0.478 -0.287 1.616 sum 11.317 -25.104 -8.174 28.724 Atomic orbital electron populations 1.22934 0.79322 1.04045 1.00794 1.87784 1.21375 1.27693 1.95628 1.21214 0.90087 0.84867 1.01029 1.19929 0.94212 0.93644 1.02031 1.21038 0.95293 0.97187 0.99493 1.21502 0.93336 0.99809 0.99809 1.21416 1.01122 0.91991 0.99665 1.21611 0.93404 0.98802 0.99606 1.18784 0.93527 0.91873 1.01090 1.21489 1.00206 0.91585 1.02375 1.22003 0.97351 0.93469 0.96109 1.20993 0.96243 1.01864 0.97910 1.21011 0.95482 0.94475 0.92646 1.60535 1.18445 1.04030 1.48888 1.21653 0.96374 0.89379 0.96872 1.19429 0.94451 0.94487 0.95792 1.21421 1.22224 0.98799 1.14854 0.94906 1.26003 0.96097 0.96886 1.00183 1.70067 1.30269 1.20136 1.38662 0.85601 0.77402 0.80222 0.79035 1.19296 1.20903 1.17067 0.87994 0.93588 0.93195 0.91996 0.91451 0.85289 0.84029 0.83620 0.84208 0.86427 0.89655 0.92096 0.91682 0.90097 0.94445 0.84191 0.92340 0.96384 0.96300 0.96070 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.31 9.19 -148.98 -1.37 -9.68 16 3 C 0.10 2.12 5.28 71.24 0.38 2.49 16 4 C -0.10 -2.12 5.91 -19.62 -0.12 -2.23 16 5 C -0.11 -2.25 9.37 22.23 0.21 -2.04 16 6 C -0.13 -2.09 10.04 22.32 0.22 -1.86 16 7 C -0.12 -1.94 10.03 22.23 0.22 -1.71 16 8 C -0.12 -2.09 7.79 22.52 0.18 -1.91 16 9 C -0.05 -1.10 5.04 -20.12 -0.10 -1.20 16 10 C -0.14 -2.92 8.54 23.66 0.20 -2.72 16 11 C -0.09 -1.96 5.50 -17.60 -0.10 -2.06 16 12 C -0.11 -2.25 8.28 71.24 0.59 -1.66 16 13 C 0.09 2.37 5.84 85.56 0.50 2.87 16 14 N -0.69 -21.89 6.49 -517.94 -3.36 -25.25 16 15 C 0.09 3.40 5.62 86.30 0.49 3.88 16 16 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 17 C -0.53 -31.17 9.66 25.60 0.25 -30.93 16 18 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 19 C 0.01 0.31 5.47 84.65 0.46 0.77 16 20 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 21 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.26 7.91 -2.39 -0.02 1.24 16 30 H 0.13 2.53 7.00 -2.91 -0.02 2.51 16 31 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.14 2.12 5.76 -2.91 -0.02 2.10 16 34 H 0.12 2.41 7.66 -2.91 -0.02 2.39 16 35 H 0.09 1.33 6.70 -2.39 -0.02 1.31 16 36 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 37 H 0.06 1.32 6.52 -2.39 -0.02 1.30 16 38 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.04 0.94 8.03 -2.38 -0.02 0.92 16 40 H 0.34 10.30 8.72 -89.69 -0.78 9.52 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 44 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 45 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -67.72 366.13 2.33 -65.39 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.12 Total: 19.38 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 4.76 Total: -36.75 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -3.06 Total: -85.03 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.37 Total: -9.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -67.72 2.33 -65.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352854915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.839 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds