Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99506 * 2 1 4 4 C 1.38744 * 120.09669 * 359.97438 * 3 2 1 5 5 C 1.37996 * 119.87936 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.29297 * 359.97438 * 5 4 3 7 7 C 1.38267 * 119.93834 * 0.02562 * 6 5 4 8 8 C 1.38414 * 119.89800 * 359.95339 * 7 6 5 9 9 C 1.51371 * 109.75835 * 179.97438 * 7 6 5 10 10 C 1.52997 * 110.30490 * 223.87893 * 9 7 6 11 11 C 1.53001 * 110.30432 * 101.72245 * 9 7 6 12 12 C 1.54351 * 105.17088 * 342.80006 * 9 7 6 13 13 C 1.51389 * 130.32420 * 180.02562 * 6 5 4 14 14 H 1.08994 * 110.38797 * 78.24216 * 13 6 5 15 15 N 1.46903 * 110.30015 * 316.13140 * 13 6 5 16 16 C 1.46902 * 110.99710 * 89.25111 * 15 13 6 17 17 C 1.52997 * 109.47411 * 179.97438 * 16 15 13 18 18 C 1.50694 * 109.47460 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00472 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99350 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00608 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00306 * 22 20 18 25 25 H 1.48504 * 109.46636 * 59.99865 * 22 20 18 26 26 H 1.09001 * 109.47516 * 300.00144 * 1 2 3 27 27 H 1.09002 * 109.47220 * 60.00188 * 1 2 3 28 28 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.05863 * 359.96648 * 4 3 2 30 30 H 1.08008 * 119.85497 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.91100 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.47251 * 175.74716 * 10 9 7 33 33 H 1.09005 * 109.47033 * 295.74660 * 10 9 7 34 34 H 1.09000 * 109.47040 * 55.74112 * 10 9 7 35 35 H 1.09001 * 109.47051 * 304.25197 * 11 9 7 36 36 H 1.08995 * 109.46945 * 64.25429 * 11 9 7 37 37 H 1.09009 * 109.47112 * 184.25309 * 11 9 7 38 38 H 1.08994 * 110.81775 * 268.14629 * 12 9 7 39 39 H 1.08999 * 110.98821 * 144.67165 * 12 9 7 40 40 H 1.00899 * 111.00150 * 213.19554 * 15 13 6 41 41 H 1.09003 * 109.47595 * 59.99616 * 16 15 13 42 42 H 1.08999 * 109.47491 * 299.99865 * 16 15 13 43 43 H 1.09005 * 109.46800 * 60.00408 * 17 16 15 44 44 H 1.08998 * 109.47382 * 300.00207 * 17 16 15 45 45 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2921 2.3757 -0.0005 5 6 1.9232 3.6030 0.0000 6 6 3.3066 3.6774 0.0016 7 6 4.0600 2.5181 0.0021 8 6 3.4299 1.2857 0.0021 9 6 5.5334 2.8653 0.0033 10 6 6.2882 1.9804 -0.9907 11 6 6.1159 2.7032 1.4088 12 6 5.6005 4.3431 -0.4371 13 6 4.2228 4.8826 0.0030 14 1 4.2857 5.3106 1.0034 15 7 3.7416 5.8897 -0.9521 16 6 2.7978 6.8148 -0.3107 17 6 2.3202 7.8470 -1.3340 18 6 1.3515 8.7956 -0.6763 19 1 1.1011 8.6742 0.3673 20 6 0.7839 9.8180 -1.4068 21 7 1.0885 9.9655 -2.6777 22 14 -0.4174 10.9934 -0.5917 23 1 -0.8808 11.9953 -1.5849 24 1 -1.5828 10.2313 -0.0759 25 1 0.2571 11.6885 0.5341 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2134 2.3220 -0.0015 30 1 1.3360 4.5095 0.0000 31 1 4.0182 0.3800 0.0029 32 1 7.3319 2.2916 -1.0346 33 1 6.2322 0.9410 -0.6671 34 1 5.8380 2.0780 -1.9786 35 1 5.5446 3.3102 2.1111 36 1 6.0619 1.6560 1.7059 37 1 7.1565 3.0282 1.4105 38 1 5.7200 4.4202 -1.5177 39 1 6.4046 4.8680 0.0785 40 1 4.5123 6.3906 -1.3684 41 1 3.2935 7.3250 0.5152 42 1 1.9422 6.2560 0.0686 43 1 1.8245 7.3371 -2.1602 44 1 3.1759 8.4058 -1.7130 45 1 0.6889 10.6845 -3.1918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353239343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = -27.398288 kcal Electronic energy + Delta-G solvation = -23051.571038 eV Core-core repulsion = 19840.371572 eV Total energy + Delta-G solvation = -3211.199467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71421 -39.02716 -35.78005 -35.47897 -33.04839 -31.14671 -30.19896 -29.01369 -27.65498 -27.32475 -26.98471 -24.15282 -22.83712 -22.70050 -20.64066 -20.32024 -19.30417 -17.35666 -16.38749 -16.15735 -15.81103 -15.63346 -15.12573 -14.86109 -14.45486 -14.24696 -13.86638 -13.72024 -13.25625 -13.16800 -12.88612 -12.62214 -12.49026 -12.35182 -12.16176 -11.90339 -11.58006 -11.45363 -11.31129 -11.19837 -10.95822 -10.93066 -10.75558 -10.57743 -10.42814 -10.31362 -9.95917 -9.32157 -9.15066 -8.67489 -8.35083 -7.94717 -7.77366 -5.99476 -4.02201 1.47002 1.61353 3.22137 3.33052 3.37601 3.39790 3.86672 4.42699 4.46042 4.52768 4.76420 4.90362 4.99659 5.05144 5.06637 5.11643 5.23867 5.32021 5.35309 5.36418 5.37824 5.49171 5.53625 5.62605 5.69251 5.73958 5.85635 5.92194 5.98664 6.00879 6.12179 6.27852 6.29019 6.33525 6.39882 6.51816 6.56896 6.85121 6.91374 7.00869 7.44816 7.50227 7.73388 7.83477 7.97456 8.09419 8.43818 9.04962 9.61530 11.11864 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015311 B = 0.003919 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.311862 B = 7143.044853 C = 8520.944481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.118 3.882 4 C -0.207 4.207 5 C -0.051 4.051 6 C -0.100 4.100 7 C -0.051 4.051 8 C -0.140 4.140 9 C -0.020 4.020 10 C -0.137 4.137 11 C -0.135 4.135 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.054 0.946 15 N -0.681 5.681 16 C 0.064 3.936 17 C 0.026 3.974 18 C -0.523 4.523 19 H 0.053 0.947 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.287 1.287 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.339 0.661 41 H 0.015 0.985 42 H 0.059 0.941 43 H 0.025 0.975 44 H 0.014 0.986 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.961 -19.167 6.315 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.073 3.927 4 C -0.226 4.226 5 C -0.070 4.070 6 C -0.101 4.101 7 C -0.052 4.052 8 C -0.159 4.159 9 C -0.021 4.021 10 C -0.195 4.195 11 C -0.192 4.192 12 C -0.152 4.152 13 C 0.015 3.985 14 H 0.072 0.928 15 N -0.312 5.312 16 C -0.064 4.064 17 C -0.011 4.011 18 C -0.561 4.561 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.213 1.213 24 H -0.202 1.202 25 H -0.203 1.203 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.157 0.843 41 H 0.033 0.967 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.032 0.968 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.513 -19.633 5.903 21.511 hybrid contribution -0.576 1.408 0.892 1.764 sum 5.937 -18.224 6.795 20.336 Atomic orbital electron populations 1.23014 0.78603 1.03517 1.01519 1.86009 1.21188 1.27162 1.89210 1.18754 0.92018 0.83957 0.97948 1.21127 0.99828 0.92126 1.09506 1.20614 0.93693 0.97212 0.95441 1.20402 0.93298 0.94877 1.01492 1.20140 0.95073 0.92178 0.97820 1.19590 0.90932 0.97305 1.08069 1.20008 0.90635 0.95332 0.96108 1.21843 0.99678 0.99043 0.98895 1.21817 1.00396 1.01941 0.95033 1.22668 0.96355 0.93902 1.02321 1.20949 0.91345 0.91117 0.95083 0.92829 1.60670 1.19789 1.17979 1.32780 1.22276 0.94019 0.93162 0.96971 1.19058 0.96027 0.92003 0.94062 1.21137 1.25819 1.12638 0.96544 0.92869 1.24992 0.96776 0.97666 0.94823 1.69965 1.43848 1.32184 1.07209 0.86663 0.81523 0.80748 0.79089 1.21260 1.20244 1.20294 0.92743 0.92594 0.88559 0.85600 0.85294 0.85989 0.92353 0.92591 0.92160 0.92383 0.92456 0.92169 0.89749 0.90678 0.84277 0.96660 0.92312 0.95677 0.96811 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.07 10.50 -19.43 -0.20 -4.27 16 3 C 0.12 1.64 6.68 -39.26 -0.26 1.38 16 4 C -0.21 -2.95 9.04 -39.48 -0.36 -3.30 16 5 C -0.05 -0.82 9.74 -39.56 -0.39 -1.21 16 6 C -0.10 -1.55 5.78 -104.16 -0.60 -2.15 16 7 C -0.05 -0.70 4.92 -104.22 -0.51 -1.22 16 8 C -0.14 -1.90 9.72 -39.38 -0.38 -2.28 16 9 C -0.02 -0.23 0.89 -154.62 -0.14 -0.37 16 10 C -0.14 -1.34 8.30 37.16 0.31 -1.04 16 11 C -0.13 -1.31 8.48 37.16 0.32 -1.00 16 12 C -0.11 -1.39 5.49 -25.31 -0.14 -1.53 16 13 C 0.13 1.89 3.20 -67.81 -0.22 1.67 16 14 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 15 N -0.68 -12.17 6.28 -106.83 -0.67 -12.84 16 16 C 0.06 1.34 5.40 -3.82 -0.02 1.32 16 17 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 18 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 22 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.05 0.44 7.67 -51.93 -0.40 0.05 16 27 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.13 1.53 6.31 -52.48 -0.33 1.20 16 30 H 0.13 2.19 6.11 -52.48 -0.32 1.87 16 31 H 0.12 1.45 7.98 -52.48 -0.42 1.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.08 1.04 7.82 -51.93 -0.41 0.64 16 39 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 40 H 0.34 5.74 8.37 -39.29 -0.33 5.42 16 41 H 0.02 0.32 8.07 -51.93 -0.42 -0.10 16 42 H 0.06 1.24 5.97 -51.93 -0.31 0.93 16 43 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -31.24 359.13 -9.20 -40.44 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.49 Total: 2.32 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -1.96 Total: -21.49 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.07 Total: -39.07 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.20 Total: -4.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.24 -9.20 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353239343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.039 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds