Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99506 * 2 1 4 4 C 1.38744 * 120.09669 * 359.97438 * 3 2 1 5 5 C 1.37996 * 119.87936 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.29297 * 359.97438 * 5 4 3 7 7 C 1.38267 * 119.93834 * 0.02562 * 6 5 4 8 8 C 1.38414 * 119.89800 * 359.95339 * 7 6 5 9 9 C 1.51371 * 109.75835 * 179.97438 * 7 6 5 10 10 C 1.52997 * 110.30490 * 223.87893 * 9 7 6 11 11 C 1.53001 * 110.30432 * 101.72245 * 9 7 6 12 12 C 1.54351 * 105.17088 * 342.80006 * 9 7 6 13 13 C 1.51389 * 130.32420 * 180.02562 * 6 5 4 14 14 H 1.08994 * 110.38797 * 78.24216 * 13 6 5 15 15 N 1.46903 * 110.30015 * 316.13140 * 13 6 5 16 16 C 1.46902 * 110.99710 * 89.25111 * 15 13 6 17 17 C 1.52997 * 109.47411 * 179.97438 * 16 15 13 18 18 C 1.50694 * 109.47460 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00179 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00472 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99350 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00608 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 179.97438 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00306 * 22 20 18 25 25 H 1.48504 * 109.46636 * 59.99865 * 22 20 18 26 26 H 1.09001 * 109.47516 * 300.00144 * 1 2 3 27 27 H 1.09002 * 109.47220 * 60.00188 * 1 2 3 28 28 H 1.09001 * 109.46971 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.05863 * 359.96648 * 4 3 2 30 30 H 1.08008 * 119.85497 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.91100 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.47251 * 175.74716 * 10 9 7 33 33 H 1.09005 * 109.47033 * 295.74660 * 10 9 7 34 34 H 1.09000 * 109.47040 * 55.74112 * 10 9 7 35 35 H 1.09001 * 109.47051 * 304.25197 * 11 9 7 36 36 H 1.08995 * 109.46945 * 64.25429 * 11 9 7 37 37 H 1.09009 * 109.47112 * 184.25309 * 11 9 7 38 38 H 1.08994 * 110.81775 * 268.14629 * 12 9 7 39 39 H 1.08999 * 110.98821 * 144.67165 * 12 9 7 40 40 H 1.00899 * 111.00150 * 213.19554 * 15 13 6 41 41 H 1.09003 * 109.47595 * 59.99616 * 16 15 13 42 42 H 1.08999 * 109.47491 * 299.99865 * 16 15 13 43 43 H 1.09005 * 109.46800 * 60.00408 * 17 16 15 44 44 H 1.08998 * 109.47382 * 300.00207 * 17 16 15 45 45 H 0.97005 * 119.99661 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2921 2.3757 -0.0005 5 6 1.9232 3.6030 0.0000 6 6 3.3066 3.6774 0.0016 7 6 4.0600 2.5181 0.0021 8 6 3.4299 1.2857 0.0021 9 6 5.5334 2.8653 0.0033 10 6 6.2882 1.9804 -0.9907 11 6 6.1159 2.7032 1.4088 12 6 5.6005 4.3431 -0.4371 13 6 4.2228 4.8826 0.0030 14 1 4.2857 5.3106 1.0034 15 7 3.7416 5.8897 -0.9521 16 6 2.7978 6.8148 -0.3107 17 6 2.3202 7.8470 -1.3340 18 6 1.3515 8.7956 -0.6763 19 1 1.1011 8.6742 0.3673 20 6 0.7839 9.8180 -1.4068 21 7 1.0885 9.9655 -2.6777 22 14 -0.4174 10.9934 -0.5917 23 1 -0.8808 11.9953 -1.5849 24 1 -1.5828 10.2313 -0.0759 25 1 0.2571 11.6885 0.5341 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2134 2.3220 -0.0015 30 1 1.3360 4.5095 0.0000 31 1 4.0182 0.3800 0.0029 32 1 7.3319 2.2916 -1.0346 33 1 6.2322 0.9410 -0.6671 34 1 5.8380 2.0780 -1.9786 35 1 5.5446 3.3102 2.1111 36 1 6.0619 1.6560 1.7059 37 1 7.1565 3.0282 1.4105 38 1 5.7200 4.4202 -1.5177 39 1 6.4046 4.8680 0.0785 40 1 4.5123 6.3906 -1.3684 41 1 3.2935 7.3250 0.5152 42 1 1.9422 6.2560 0.0686 43 1 1.8245 7.3371 -2.1602 44 1 3.1759 8.4058 -1.7130 45 1 0.6889 10.6845 -3.1918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353239343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = -45.732482 kcal Electronic energy + Delta-G solvation = -23052.366068 eV Core-core repulsion = 19840.371572 eV Total energy + Delta-G solvation = -3211.994497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76552 -40.00767 -37.21933 -36.56153 -35.03587 -32.64556 -31.30872 -30.39382 -28.92206 -28.12309 -27.87227 -26.00618 -23.99558 -23.78076 -22.51368 -21.46992 -20.31471 -18.51710 -18.31991 -17.27498 -16.89788 -16.61336 -16.57637 -16.27251 -15.93130 -15.57987 -14.93000 -14.86606 -14.43870 -14.32790 -14.17406 -13.98092 -13.68569 -13.44136 -13.27961 -13.09207 -12.95317 -12.82262 -12.48037 -12.46951 -12.32150 -12.16069 -12.03413 -11.95287 -11.74583 -11.52074 -11.38488 -11.27618 -11.09111 -10.56845 -9.75771 -9.32391 -8.97471 -8.20932 -6.32667 0.38070 0.47925 1.39179 1.42330 1.50387 2.32711 2.39609 2.74823 3.12384 3.38115 3.47771 3.60566 3.92037 3.96735 4.10508 4.23369 4.26954 4.32162 4.38001 4.41423 4.43837 4.47104 4.60947 4.63154 4.70696 4.74134 4.86484 4.90168 4.96780 5.00099 5.07211 5.10278 5.17299 5.23891 5.32285 5.37068 5.43833 5.47163 5.51154 5.66436 5.74716 5.79252 5.82190 6.13912 6.28020 6.44769 6.57742 6.84270 7.36590 8.90997 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015311 B = 0.003919 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.311862 B = 7143.044853 C = 8520.944481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.116 3.884 4 C -0.213 4.213 5 C -0.074 4.074 6 C -0.126 4.126 7 C -0.048 4.048 8 C -0.145 4.145 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.109 4.109 13 C 0.124 3.876 14 H 0.051 0.949 15 N -0.687 5.687 16 C 0.084 3.916 17 C 0.034 3.966 18 C -0.546 4.546 19 H 0.059 0.941 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.966 3.034 23 H -0.282 1.282 24 H -0.268 1.268 25 H -0.266 1.266 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.343 0.657 41 H 0.018 0.982 42 H 0.055 0.945 43 H -0.008 1.008 44 H -0.007 1.007 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -20.420 7.544 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.071 3.929 4 C -0.232 4.232 5 C -0.092 4.092 6 C -0.127 4.127 7 C -0.049 4.049 8 C -0.163 4.163 9 C -0.018 4.018 10 C -0.191 4.191 11 C -0.189 4.189 12 C -0.146 4.146 13 C 0.015 3.985 14 H 0.069 0.931 15 N -0.318 5.318 16 C -0.044 4.044 17 C -0.003 4.003 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.195 4.195 21 N -0.571 5.571 22 Si 0.790 3.210 23 H -0.207 1.207 24 H -0.192 1.192 25 H -0.191 1.191 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.142 0.858 29 H 0.158 0.842 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.162 0.838 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.010 0.990 44 H 0.011 0.989 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.169 -20.906 7.142 23.226 hybrid contribution -0.812 1.710 0.479 1.953 sum 6.357 -19.196 7.621 21.609 Atomic orbital electron populations 1.23309 0.76729 1.05538 1.01916 1.86006 1.23148 1.26340 1.88910 1.18904 0.92447 0.84274 0.97252 1.21251 1.00710 0.91750 1.09490 1.20606 0.94188 0.97199 0.97253 1.20565 0.93357 0.95867 1.02888 1.20442 0.96382 0.91548 0.96508 1.19867 0.91093 0.97936 1.07448 1.20066 0.89307 0.94751 0.97628 1.21825 1.00329 0.99354 0.97627 1.21809 1.01210 1.02424 0.93433 1.22684 0.94867 0.94726 1.02348 1.21055 0.93128 0.90120 0.94232 0.93132 1.60563 1.19938 1.17644 1.33654 1.21868 0.94759 0.92427 0.95388 1.18890 0.94698 0.92562 0.94149 1.21568 1.26471 1.13372 0.97033 0.92315 1.25953 0.98658 0.99539 0.95370 1.70104 1.45117 1.33031 1.08822 0.85498 0.79034 0.78261 0.78244 1.20702 1.19247 1.19080 0.92088 0.92455 0.85798 0.84215 0.87411 0.84133 0.90499 0.91498 0.93386 0.93489 0.91587 0.90171 0.90082 0.88579 0.83797 0.96402 0.92658 0.99006 0.98889 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.33 -7.85 10.50 -92.42 -0.97 -8.82 16 3 C 0.12 3.15 6.68 22.48 0.15 3.30 16 4 C -0.21 -6.12 9.04 22.33 0.20 -5.92 16 5 C -0.07 -2.46 9.74 22.29 0.22 -2.24 16 6 C -0.13 -3.95 5.78 -19.56 -0.11 -4.06 16 7 C -0.05 -1.27 4.92 -19.60 -0.10 -1.37 16 8 C -0.14 -3.72 9.72 22.40 0.22 -3.50 16 9 C -0.02 -0.35 0.89 -52.26 -0.05 -0.40 16 10 C -0.13 -2.27 8.30 71.98 0.60 -1.67 16 11 C -0.13 -2.21 8.48 71.98 0.61 -1.60 16 12 C -0.11 -2.47 5.49 31.51 0.17 -2.30 16 13 C 0.12 3.75 3.20 44.85 0.14 3.89 16 14 H 0.05 1.56 7.82 -2.39 -0.02 1.54 16 15 N -0.69 -25.21 6.28 -491.91 -3.09 -28.30 16 16 C 0.08 3.66 5.40 86.30 0.47 4.13 16 17 C 0.03 1.88 5.23 29.85 0.16 2.03 16 18 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.00 0.17 5.46 84.66 0.46 0.63 16 21 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 22 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16 27 H 0.06 0.91 7.66 -2.39 -0.02 0.90 16 28 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.14 3.42 6.31 -2.91 -0.02 3.41 16 30 H 0.11 3.93 6.11 -2.91 -0.02 3.92 16 31 H 0.14 3.02 7.98 -2.91 -0.02 2.99 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.99 8.07 -2.38 -0.02 0.97 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.91 7.82 -2.39 -0.02 1.89 16 39 H 0.10 1.78 7.91 -2.39 -0.02 1.76 16 40 H 0.34 11.90 8.37 -89.69 -0.75 11.15 16 41 H 0.02 0.76 8.07 -2.39 -0.02 0.74 16 42 H 0.06 2.43 5.97 -2.39 -0.01 2.42 16 43 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -68.45 359.13 2.95 -65.50 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.22 Total: 21.21 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 4.49 Total: -39.09 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -2.81 Total: -85.47 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.97 Total: -8.82 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.45 2.95 -65.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353239343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.770 kcal (2) G-P(sol) polarization free energy of solvation -68.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds