Wall clock time and date at job start Tue Mar 31 2020 07:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47039 * 2 1 4 4 C 1.53002 * 109.47110 * 175.00013 * 3 2 1 5 5 C 1.52999 * 109.47031 * 185.00104 * 4 3 2 6 6 N 1.46502 * 109.47344 * 294.99958 * 3 2 1 7 7 C 1.34777 * 119.99809 * 154.99827 * 6 3 2 8 8 O 1.21280 * 120.00039 * 359.97438 * 7 6 3 9 9 C 1.50700 * 119.99770 * 180.02562 * 7 6 3 10 10 C 1.53002 * 109.47195 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46557 * 305.97777 * 10 9 7 12 12 C 1.50701 * 109.47097 * 65.97510 * 10 9 7 13 13 H 1.07993 * 120.00275 * 26.94000 * 12 10 9 14 14 C 1.37874 * 119.99563 * 206.93422 * 12 10 9 15 15 N 1.31511 * 120.00642 * 353.27869 * 14 12 10 16 16 Si 1.86806 * 119.99657 * 173.55003 * 14 12 10 17 17 H 1.48508 * 109.47009 * 269.72786 * 16 14 12 18 18 H 1.48495 * 109.47295 * 29.72253 * 16 14 12 19 19 H 1.48498 * 109.47036 * 149.72942 * 16 14 12 20 20 C 1.50701 * 109.47079 * 185.97630 * 10 9 7 21 21 C 1.38228 * 120.00031 * 294.46306 * 20 10 9 22 22 C 1.38237 * 120.00225 * 179.78766 * 21 20 10 23 23 C 1.38242 * 119.99502 * 0.44448 * 22 21 20 24 24 C 1.38227 * 120.00085 * 359.80807 * 23 22 21 25 25 C 1.38234 * 119.99818 * 114.73621 * 20 10 9 26 26 H 1.08993 * 109.47096 * 299.99674 * 1 2 3 27 27 H 1.09004 * 109.47154 * 60.00004 * 1 2 3 28 28 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47002 * 240.00480 * 2 1 3 30 30 H 1.08998 * 109.47351 * 120.00378 * 2 1 3 31 31 H 1.09000 * 109.47322 * 55.00044 * 3 2 1 32 32 H 1.09001 * 109.47192 * 305.00273 * 4 3 2 33 33 H 1.09000 * 109.47179 * 64.99987 * 4 3 2 34 34 H 1.09000 * 109.47235 * 59.99916 * 5 4 3 35 35 H 1.08995 * 109.47139 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47270 * 300.00121 * 5 4 3 37 37 H 0.96994 * 119.99670 * 335.00190 * 6 3 2 38 38 H 1.09002 * 109.47489 * 59.99681 * 9 7 6 39 39 H 1.09008 * 109.46814 * 300.00158 * 9 7 6 40 40 H 0.96999 * 119.99416 * 354.68929 * 15 14 12 41 41 H 1.08004 * 120.00431 * 0.02562 * 21 20 10 42 42 H 1.08000 * 120.00531 * 180.27186 * 22 21 20 43 43 H 1.07999 * 119.99821 * 179.83724 * 23 22 21 44 44 H 1.08005 * 120.00269 * 180.02562 * 24 23 22 45 45 H 1.08004 * 120.00374 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4444 0.1257 5 6 4.0645 2.8850 0.2511 6 7 1.6525 2.0975 -1.2518 7 6 1.5256 3.4385 -1.2995 8 8 1.7318 4.1028 -0.3060 9 6 1.1264 4.1122 -2.5870 10 6 1.0558 5.6252 -2.3704 11 1 0.3977 5.8413 -1.5287 12 6 2.4357 6.1558 -2.0782 13 1 3.3046 5.6375 -2.4559 14 6 2.5887 7.3030 -1.3289 15 7 1.5337 8.0069 -0.9811 16 14 4.2954 7.8615 -0.8142 17 1 4.6370 7.2615 0.5006 18 1 5.2865 7.4248 -1.8300 19 1 4.3192 9.3422 -0.7038 20 6 0.5161 6.2859 -3.6127 21 6 1.2439 6.2484 -4.7872 22 6 0.7469 6.8506 -5.9279 23 6 -0.4738 7.4983 -5.8916 24 6 -1.1993 7.5403 -4.7157 25 6 -0.7042 6.9342 -3.5762 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6054 1.9816 0.8418 32 1 3.8571 0.8800 1.0113 33 1 4.0030 0.9836 -0.7596 34 1 3.6263 3.3458 1.1365 35 1 5.1508 2.8864 0.3403 36 1 3.7722 3.4494 -0.6344 37 1 1.4871 1.5661 -2.0462 38 1 0.1501 3.7440 -2.9024 39 1 1.8648 3.8899 -3.3575 40 1 0.6564 7.7631 -1.3153 41 1 2.1992 5.7452 -4.8148 42 1 1.3135 6.8175 -6.8468 43 1 -0.8610 7.9711 -6.7821 44 1 -2.1532 8.0459 -4.6874 45 1 -1.2711 6.9670 -2.6574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353352194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:35 Heat of formation + Delta-G solvation = -40.296282 kcal Electronic energy + Delta-G solvation = -23719.754134 eV Core-core repulsion = 20507.995369 eV Total energy + Delta-G solvation = -3211.758765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.49402 -38.41883 -36.28426 -34.16316 -32.05523 -31.90687 -31.13294 -30.10152 -28.82427 -26.27890 -24.85021 -22.91492 -21.85301 -21.68123 -20.80703 -20.09467 -19.44642 -16.89499 -16.36402 -16.05468 -15.76698 -14.90794 -14.46315 -14.20878 -13.89975 -13.75688 -13.65998 -13.40384 -13.07057 -12.74509 -12.63918 -12.35137 -12.31459 -12.08829 -11.83002 -11.53104 -11.42659 -11.06635 -10.94872 -10.86465 -10.68664 -10.53239 -10.41874 -10.41701 -10.10483 -10.03737 -9.67011 -8.92575 -8.60450 -8.42279 -8.24940 -8.13069 -7.62325 -6.19829 -3.88583 2.19863 2.25638 3.51549 3.55008 3.56901 3.69578 3.74829 4.62004 4.69364 4.72583 5.03408 5.07091 5.42435 5.44241 5.55187 5.55715 5.60292 5.64261 5.68081 5.76853 5.79417 5.87256 5.90673 6.02889 6.10183 6.13065 6.14882 6.19682 6.28168 6.32813 6.35723 6.43969 6.56451 6.72059 6.80486 6.94411 6.97786 7.04954 7.22349 7.24488 7.39673 7.74895 7.86995 8.12793 8.25954 8.54828 8.99618 9.11297 9.80134 11.19660 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.005842 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.923121 B = 4791.330267 C = 6241.258752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.145 3.855 4 C -0.130 4.130 5 C -0.149 4.149 6 N -0.742 5.742 7 C 0.512 3.488 8 O -0.494 6.494 9 C -0.117 4.117 10 C 0.074 3.926 11 H 0.049 0.951 12 C -0.564 4.564 13 H 0.045 0.955 14 C 0.033 3.967 15 N -0.908 5.908 16 Si 1.060 2.940 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.288 1.288 20 C -0.033 4.033 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.153 4.153 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.390 0.610 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 -13.701 -3.692 14.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.040 3.960 4 C -0.169 4.169 5 C -0.206 4.206 6 N -0.397 5.397 7 C 0.299 3.701 8 O -0.365 6.365 9 C -0.158 4.158 10 C 0.054 3.946 11 H 0.067 0.933 12 C -0.601 4.601 13 H 0.063 0.937 14 C -0.172 4.172 15 N -0.543 5.543 16 Si 0.890 3.110 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.214 1.214 20 C -0.033 4.033 21 C -0.124 4.124 22 C -0.148 4.148 23 C -0.171 4.171 24 C -0.143 4.143 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.223 0.777 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.808 -12.021 -2.036 12.219 hybrid contribution -0.753 -1.320 -1.367 2.044 sum -1.561 -13.341 -3.402 13.857 Atomic orbital electron populations 1.21756 0.95512 1.01139 1.02444 1.21805 0.96391 0.96119 1.02415 1.20937 0.94200 0.92238 0.88626 1.21950 0.95547 0.98437 1.00987 1.21835 0.98943 0.95518 1.04279 1.46228 1.73428 1.07563 1.12525 1.20750 0.76836 0.81029 0.91473 1.90754 1.46319 1.63211 1.36211 1.21668 1.00261 0.99173 0.94675 1.17858 0.98527 0.87649 0.90526 0.93274 1.21530 0.89948 1.12001 1.36662 0.93695 1.25520 1.04382 0.93564 0.93760 1.70695 1.00102 1.40207 1.43293 0.83681 0.74940 0.76017 0.76378 1.21408 1.21739 1.21419 1.20872 0.91301 0.95124 0.96028 1.20921 0.99210 1.00038 0.92279 1.21016 0.96228 0.99526 0.98067 1.20822 0.96259 1.02461 0.97558 1.20962 0.99472 1.00347 0.93504 1.21076 0.96505 0.99754 0.97512 0.92668 0.92411 0.93007 0.91772 0.90980 0.89785 0.92147 0.92506 0.92254 0.94327 0.91000 0.77714 0.91885 0.90487 0.91756 0.86724 0.87485 0.87613 0.87488 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.80 37.16 0.36 -1.11 16 2 C -0.13 -1.26 5.47 -26.73 -0.15 -1.41 16 3 C 0.15 1.93 2.26 -67.93 -0.15 1.78 16 4 C -0.13 -1.75 5.61 -26.73 -0.15 -1.90 16 5 C -0.15 -2.57 8.52 37.16 0.32 -2.26 16 6 N -0.74 -10.66 4.48 -53.80 -0.24 -10.90 16 7 C 0.51 9.85 6.15 -10.99 -0.07 9.78 16 8 O -0.49 -11.75 12.16 5.56 0.07 -11.68 16 9 C -0.12 -2.25 4.95 -27.88 -0.14 -2.39 16 10 C 0.07 1.74 1.23 -92.92 -0.11 1.63 16 11 H 0.05 1.33 6.59 -51.93 -0.34 0.98 16 12 C -0.56 -15.16 6.35 -34.44 -0.22 -15.38 16 13 H 0.04 1.22 7.82 -52.49 -0.41 0.81 16 14 C 0.03 0.96 5.45 -17.82 -0.10 0.86 16 15 N -0.91 -27.72 13.56 55.43 0.75 -26.97 16 16 Si 1.06 26.41 29.91 -169.99 -5.08 21.33 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 20 C -0.03 -0.72 4.54 -104.63 -0.47 -1.19 16 21 C -0.11 -2.18 8.90 -39.59 -0.35 -2.53 16 22 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 24 C -0.12 -2.30 10.05 -39.58 -0.40 -2.69 16 25 C -0.13 -2.72 9.18 -39.58 -0.36 -3.09 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.59 7.75 -51.93 -0.40 0.19 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.13 7.85 -51.93 -0.41 0.72 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.47 5.65 -51.93 -0.29 1.18 16 37 H 0.39 4.49 8.60 -40.82 -0.35 4.14 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.39 7.96 -51.92 -0.41 0.98 16 40 H 0.27 8.16 6.24 -40.82 -0.25 7.90 16 41 H 0.11 2.30 7.85 -52.48 -0.41 1.89 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 45 H 0.11 2.27 7.95 -52.48 -0.42 1.86 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -31.99 361.11 -9.40 -41.39 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.54 Total: 7.11 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -2.79 Total: -25.71 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.51 Total: -37.88 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -5.08 Total: 21.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.99 -9.40 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353352194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.093 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds