Wall clock time and date at job start Tue Mar 31 2020 07:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47039 * 2 1 4 4 C 1.53002 * 109.47110 * 175.00013 * 3 2 1 5 5 C 1.52999 * 109.47031 * 185.00104 * 4 3 2 6 6 N 1.46502 * 109.47344 * 294.99958 * 3 2 1 7 7 C 1.34777 * 119.99809 * 154.99827 * 6 3 2 8 8 O 1.21280 * 120.00039 * 359.97438 * 7 6 3 9 9 C 1.50700 * 119.99770 * 180.02562 * 7 6 3 10 10 C 1.53002 * 109.47195 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46557 * 305.97777 * 10 9 7 12 12 C 1.50701 * 109.47097 * 65.97510 * 10 9 7 13 13 H 1.07993 * 120.00275 * 26.94000 * 12 10 9 14 14 C 1.37874 * 119.99563 * 206.93422 * 12 10 9 15 15 N 1.31511 * 120.00642 * 353.27869 * 14 12 10 16 16 Si 1.86806 * 119.99657 * 173.55003 * 14 12 10 17 17 H 1.48508 * 109.47009 * 269.72786 * 16 14 12 18 18 H 1.48495 * 109.47295 * 29.72253 * 16 14 12 19 19 H 1.48498 * 109.47036 * 149.72942 * 16 14 12 20 20 C 1.50701 * 109.47079 * 185.97630 * 10 9 7 21 21 C 1.38228 * 120.00031 * 294.46306 * 20 10 9 22 22 C 1.38237 * 120.00225 * 179.78766 * 21 20 10 23 23 C 1.38242 * 119.99502 * 0.44448 * 22 21 20 24 24 C 1.38227 * 120.00085 * 359.80807 * 23 22 21 25 25 C 1.38234 * 119.99818 * 114.73621 * 20 10 9 26 26 H 1.08993 * 109.47096 * 299.99674 * 1 2 3 27 27 H 1.09004 * 109.47154 * 60.00004 * 1 2 3 28 28 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47002 * 240.00480 * 2 1 3 30 30 H 1.08998 * 109.47351 * 120.00378 * 2 1 3 31 31 H 1.09000 * 109.47322 * 55.00044 * 3 2 1 32 32 H 1.09001 * 109.47192 * 305.00273 * 4 3 2 33 33 H 1.09000 * 109.47179 * 64.99987 * 4 3 2 34 34 H 1.09000 * 109.47235 * 59.99916 * 5 4 3 35 35 H 1.08995 * 109.47139 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47270 * 300.00121 * 5 4 3 37 37 H 0.96994 * 119.99670 * 335.00190 * 6 3 2 38 38 H 1.09002 * 109.47489 * 59.99681 * 9 7 6 39 39 H 1.09008 * 109.46814 * 300.00158 * 9 7 6 40 40 H 0.96999 * 119.99416 * 354.68929 * 15 14 12 41 41 H 1.08004 * 120.00431 * 0.02562 * 21 20 10 42 42 H 1.08000 * 120.00531 * 180.27186 * 22 21 20 43 43 H 1.07999 * 119.99821 * 179.83724 * 23 22 21 44 44 H 1.08005 * 120.00269 * 180.02562 * 24 23 22 45 45 H 1.08004 * 120.00374 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4444 0.1257 5 6 4.0645 2.8850 0.2511 6 7 1.6525 2.0975 -1.2518 7 6 1.5256 3.4385 -1.2995 8 8 1.7318 4.1028 -0.3060 9 6 1.1264 4.1122 -2.5870 10 6 1.0558 5.6252 -2.3704 11 1 0.3977 5.8413 -1.5287 12 6 2.4357 6.1558 -2.0782 13 1 3.3046 5.6375 -2.4559 14 6 2.5887 7.3030 -1.3289 15 7 1.5337 8.0069 -0.9811 16 14 4.2954 7.8615 -0.8142 17 1 4.6370 7.2615 0.5006 18 1 5.2865 7.4248 -1.8300 19 1 4.3192 9.3422 -0.7038 20 6 0.5161 6.2859 -3.6127 21 6 1.2439 6.2484 -4.7872 22 6 0.7469 6.8506 -5.9279 23 6 -0.4738 7.4983 -5.8916 24 6 -1.1993 7.5403 -4.7157 25 6 -0.7042 6.9342 -3.5762 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6054 1.9816 0.8418 32 1 3.8571 0.8800 1.0113 33 1 4.0030 0.9836 -0.7596 34 1 3.6263 3.3458 1.1365 35 1 5.1508 2.8864 0.3403 36 1 3.7722 3.4494 -0.6344 37 1 1.4871 1.5661 -2.0462 38 1 0.1501 3.7440 -2.9024 39 1 1.8648 3.8899 -3.3575 40 1 0.6564 7.7631 -1.3153 41 1 2.1992 5.7452 -4.8148 42 1 1.3135 6.8175 -6.8468 43 1 -0.8610 7.9711 -6.7821 44 1 -2.1532 8.0459 -4.6874 45 1 -1.2711 6.9670 -2.6574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353352194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:34 Heat of formation + Delta-G solvation = -58.510990 kcal Electronic energy + Delta-G solvation = -23720.543983 eV Core-core repulsion = 20507.995369 eV Total energy + Delta-G solvation = -3212.548615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97177 -39.93027 -37.58990 -35.97657 -33.60439 -32.93088 -32.89313 -31.60984 -30.34359 -27.58562 -26.64588 -24.66437 -23.21291 -22.86848 -22.11204 -21.46091 -21.07475 -18.80544 -17.94598 -17.33012 -17.19876 -16.38306 -16.01323 -15.70834 -15.66380 -15.00008 -14.90952 -14.78144 -14.55039 -14.20237 -14.04135 -13.87906 -13.81780 -13.45420 -13.27674 -13.12801 -12.68308 -12.64066 -12.43055 -12.21161 -12.05825 -11.96823 -11.86983 -11.70570 -11.69377 -11.55149 -11.49314 -10.67719 -10.53180 -10.29480 -9.77107 -9.64419 -9.26629 -8.42926 -6.09178 0.67520 0.73797 1.46195 1.56167 1.69821 2.01488 2.46076 2.61196 3.10947 3.37824 3.74085 4.07108 4.13401 4.17272 4.18993 4.28709 4.31260 4.36818 4.44825 4.50381 4.52326 4.58095 4.64557 4.74816 4.83373 4.87587 4.95133 5.03398 5.05174 5.11132 5.12497 5.16545 5.23970 5.31386 5.41175 5.42810 5.44502 5.54625 5.74345 5.80994 5.82485 5.96118 6.25286 6.31836 6.41894 6.79487 6.85455 7.65103 7.66835 8.97421 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.005842 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.923121 B = 4791.330267 C = 6241.258752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.142 3.858 4 C -0.123 4.123 5 C -0.145 4.145 6 N -0.720 5.720 7 C 0.511 3.489 8 O -0.549 6.549 9 C -0.112 4.112 10 C 0.076 3.924 11 H 0.003 0.997 12 C -0.548 4.548 13 H 0.038 0.962 14 C -0.023 4.023 15 N -0.946 5.946 16 Si 1.094 2.906 17 H -0.290 1.290 18 H -0.268 1.268 19 H -0.288 1.288 20 C -0.056 4.056 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.145 4.145 24 C -0.125 4.125 25 C -0.153 4.153 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.408 0.592 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.261 0.739 41 H 0.113 0.887 42 H 0.142 0.858 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -15.848 -6.330 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.037 3.963 4 C -0.161 4.161 5 C -0.203 4.203 6 N -0.375 5.375 7 C 0.298 3.702 8 O -0.425 6.425 9 C -0.152 4.152 10 C 0.057 3.943 11 H 0.021 0.979 12 C -0.586 4.586 13 H 0.056 0.944 14 C -0.221 4.221 15 N -0.585 5.585 16 Si 0.919 3.081 17 H -0.217 1.217 18 H -0.192 1.192 19 H -0.214 1.214 20 C -0.057 4.057 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.162 4.162 24 C -0.143 4.143 25 C -0.171 4.171 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.245 0.755 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.131 0.869 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.402 -14.238 -4.719 15.005 hybrid contribution -0.948 -0.724 -0.613 1.341 sum -1.349 -14.963 -5.331 15.941 Atomic orbital electron populations 1.21766 0.95632 1.02203 1.01337 1.21755 0.96158 0.93221 1.04408 1.21071 0.94414 0.94094 0.86714 1.21919 0.95182 0.95886 1.03127 1.21758 0.99605 0.97739 1.01157 1.45980 1.71591 1.06032 1.13915 1.20786 0.76306 0.82446 0.90642 1.90744 1.49102 1.64840 1.37861 1.21562 1.02086 0.96383 0.95213 1.17667 0.95852 0.90656 0.90104 0.97882 1.21748 0.91320 1.10631 1.34906 0.94409 1.26606 1.06386 0.94550 0.94573 1.70779 1.00219 1.41758 1.45703 0.83248 0.72621 0.75641 0.76563 1.21713 1.19226 1.21404 1.20659 0.92607 0.96440 0.95979 1.20996 0.99181 1.01152 0.92680 1.21407 0.96582 0.97940 0.98320 1.21306 0.95518 1.01054 0.98361 1.21296 1.00643 0.99464 0.92891 1.21125 0.96727 1.01008 0.98274 0.94236 0.93171 0.90814 0.89468 0.89176 0.93045 0.89575 0.90501 0.95209 0.93089 0.94473 0.75545 0.89466 0.88979 0.92893 0.86918 0.83974 0.83560 0.84748 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.80 71.98 0.71 -1.96 16 2 C -0.12 -1.95 5.47 30.59 0.17 -1.78 16 3 C 0.14 3.64 2.26 44.99 0.10 3.74 16 4 C -0.12 -3.08 5.61 30.59 0.17 -2.91 16 5 C -0.15 -5.14 8.52 71.98 0.61 -4.52 16 6 N -0.72 -20.25 4.48 -442.53 -1.98 -22.23 16 7 C 0.51 20.30 6.15 87.66 0.54 20.83 16 8 O -0.55 -27.91 12.16 -3.03 -0.04 -27.95 16 9 C -0.11 -4.38 4.95 29.85 0.15 -4.24 16 10 C 0.08 3.80 1.23 -12.28 -0.02 3.78 16 11 H 0.00 0.17 6.59 -2.39 -0.02 0.16 16 12 C -0.55 -30.69 6.35 25.60 0.16 -30.52 16 13 H 0.04 2.11 7.82 -2.91 -0.02 2.09 16 14 C -0.02 -1.36 5.45 84.65 0.46 -0.90 16 15 N -0.95 -61.00 13.56 21.45 0.29 -60.71 16 16 Si 1.09 54.98 29.91 68.60 2.05 57.03 16 17 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 20 C -0.06 -2.54 4.54 -19.87 -0.09 -2.63 16 21 C -0.12 -4.88 8.90 22.27 0.20 -4.68 16 22 C -0.12 -4.11 10.05 22.27 0.22 -3.89 16 23 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 24 C -0.13 -4.39 10.05 22.27 0.22 -4.16 16 25 C -0.15 -6.55 9.18 22.27 0.20 -6.35 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.94 7.75 -2.39 -0.02 0.92 16 28 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.69 7.58 -2.39 -0.02 1.67 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.03 1.18 7.85 -2.39 -0.02 1.17 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.56 5.65 -2.39 -0.01 1.54 16 37 H 0.41 8.54 8.60 -92.71 -0.80 7.74 16 38 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.09 3.29 7.96 -2.38 -0.02 3.27 16 40 H 0.26 16.80 6.24 -92.71 -0.58 16.22 16 41 H 0.11 4.44 7.85 -2.91 -0.02 4.42 16 42 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 43 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 45 H 0.09 4.20 7.95 -2.91 -0.02 4.17 16 Total: -1.00 -75.80 361.11 4.71 -71.09 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.35 Total: 27.24 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 4.04 Total: -44.48 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -1.69 Total: -82.94 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.04 Total: -27.95 kcal Atomic # 14 Polarization: 54.98 SS G_CDS: 2.05 Total: 57.03 kcal Total: -75.80 4.71 -71.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353352194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.581 kcal (2) G-P(sol) polarization free energy of solvation -75.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds