Wall clock time and date at job start Tue Mar 31 2020 07:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47311 * 2 1 4 4 C 1.53001 * 109.47114 * 120.00024 * 2 1 3 5 5 C 1.53001 * 109.47256 * 64.99731 * 4 2 1 6 6 N 1.46503 * 109.47206 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99939 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00090 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99980 * 179.97438 * 7 6 5 10 10 C 1.52994 * 109.46995 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47363 * 54.05802 * 10 9 7 12 12 C 1.50705 * 109.47281 * 294.05789 * 10 9 7 13 13 H 1.07999 * 119.99468 * 330.08103 * 12 10 9 14 14 C 1.37873 * 120.00025 * 150.08844 * 12 10 9 15 15 N 1.31511 * 120.00099 * 6.55948 * 14 12 10 16 16 Si 1.86805 * 119.99647 * 186.56809 * 14 12 10 17 17 H 1.48498 * 109.47129 * 269.99471 * 16 14 12 18 18 H 1.48498 * 109.47291 * 29.99590 * 16 14 12 19 19 H 1.48503 * 109.46813 * 149.99580 * 16 14 12 20 20 C 1.50704 * 109.47072 * 174.05777 * 10 9 7 21 21 C 1.38232 * 120.00156 * 64.29986 * 20 10 9 22 22 C 1.38227 * 120.00423 * 179.81276 * 21 20 10 23 23 C 1.38243 * 119.99751 * 0.39675 * 22 21 20 24 24 C 1.38236 * 119.99618 * 359.85625 * 23 22 21 25 25 C 1.38229 * 120.00074 * 359.95579 * 24 23 22 26 26 H 1.08996 * 109.47076 * 59.99718 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47013 * 300.00030 * 1 2 3 29 29 H 1.09000 * 109.47073 * 239.99416 * 2 1 3 30 30 H 1.08998 * 109.47101 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46978 * 299.99741 * 3 2 1 32 32 H 1.09000 * 109.47107 * 60.00027 * 3 2 1 33 33 H 1.08999 * 109.47013 * 305.00004 * 4 2 1 34 34 H 1.09001 * 109.47663 * 184.99947 * 4 2 1 35 35 H 1.08997 * 109.47176 * 59.99743 * 5 4 2 36 36 H 1.09002 * 109.47082 * 299.99871 * 5 4 2 37 37 H 0.97001 * 120.00018 * 359.97438 * 6 5 4 38 38 H 1.08999 * 109.46642 * 59.99829 * 9 7 6 39 39 H 1.09002 * 109.46876 * 299.99722 * 9 7 6 40 40 H 0.96995 * 120.00371 * 354.73583 * 15 14 12 41 41 H 1.08007 * 119.99790 * 359.97438 * 21 20 10 42 42 H 1.08004 * 120.00499 * 180.23296 * 22 21 20 43 43 H 1.08002 * 119.99679 * 179.83680 * 23 22 21 44 44 H 1.08002 * 119.99754 * 179.97438 * 24 23 22 45 45 H 1.08000 * 119.99707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1230 -2.8860 2.3845 7 6 1.8829 -4.2020 2.5480 8 8 1.2625 -4.8146 1.7049 9 6 2.3852 -4.9124 3.7786 10 6 1.9803 -6.3865 3.7173 11 1 2.3253 -6.8195 2.7784 12 6 0.4798 -6.4993 3.8010 13 1 -0.0877 -5.7596 4.3462 14 6 -0.1685 -7.5467 3.1817 15 7 0.5274 -8.5160 2.6287 16 14 -2.0353 -7.5889 3.1280 17 1 -2.5489 -8.3040 4.3238 18 1 -2.5617 -6.2004 3.1175 19 1 -2.4792 -8.2960 1.8998 20 6 2.6048 -7.1274 4.8716 21 6 2.2463 -6.8139 6.1692 22 6 2.8162 -7.4961 7.2278 23 6 3.7510 -8.4862 6.9890 24 6 4.1134 -8.7961 5.6915 25 6 3.5405 -8.1165 4.6328 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 2.0697 -2.6550 0.3003 36 1 0.5488 -2.2724 1.1422 37 1 2.6195 -2.3961 3.0587 38 1 1.9503 -4.4530 4.6662 39 1 3.4715 -4.8353 3.8246 40 1 1.4947 -8.4569 2.5889 41 1 1.5188 -6.0377 6.3560 42 1 2.5333 -7.2537 8.2416 43 1 4.1982 -9.0174 7.8162 44 1 4.8439 -9.5693 5.5049 45 1 3.8233 -8.3589 3.6191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353359352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:43 Heat of formation + Delta-G solvation = -45.193055 kcal Electronic energy + Delta-G solvation = -22750.130061 eV Core-core repulsion = 19538.158956 eV Total energy + Delta-G solvation = -3211.971105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.19848 -38.32621 -36.97259 -34.38583 -33.69341 -31.33252 -30.10137 -29.62863 -28.31826 -27.33402 -25.08743 -23.32013 -22.45404 -21.64425 -20.50101 -20.03743 -19.28181 -16.90254 -16.30897 -15.88840 -15.58129 -15.51672 -14.81665 -14.26540 -14.16236 -13.89141 -13.70160 -13.64125 -13.22256 -12.75627 -12.68804 -12.41899 -12.32757 -12.28820 -11.85193 -11.81184 -11.62735 -11.39457 -11.03140 -10.87935 -10.80624 -10.70706 -10.68305 -10.41366 -10.12443 -10.02606 -9.63396 -8.98485 -8.62905 -8.51990 -8.23321 -8.12861 -7.61655 -6.20871 -3.88103 2.20223 2.26207 3.49882 3.53365 3.58144 3.69992 3.71429 4.62352 4.67108 4.68707 4.70148 4.78169 5.19219 5.30973 5.44678 5.45883 5.51228 5.57122 5.60609 5.64513 5.65964 5.71166 5.76264 5.77616 5.95112 5.97561 6.02302 6.04697 6.11609 6.18130 6.24056 6.27201 6.32868 6.43988 6.71404 6.80674 6.93977 6.94889 7.22088 7.23915 7.39973 7.74142 7.87272 8.08507 8.25633 8.53672 8.99981 9.07152 9.81160 11.19660 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.004110 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.957319 B = 6810.652613 C = 8125.621362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.125 4.125 5 C 0.120 3.880 6 N -0.751 5.751 7 C 0.512 3.488 8 O -0.501 6.501 9 C -0.117 4.117 10 C 0.072 3.928 11 H 0.051 0.949 12 C -0.567 4.567 13 H 0.045 0.955 14 C 0.032 3.968 15 N -0.907 5.907 16 Si 1.066 2.934 17 H -0.291 1.291 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.030 4.030 21 C -0.109 4.109 22 C -0.130 4.130 23 C -0.153 4.153 24 C -0.124 4.124 25 C -0.130 4.130 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.392 0.608 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.270 0.730 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.075 14.897 1.000 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.163 4.163 5 C -0.004 4.004 6 N -0.406 5.406 7 C 0.298 3.702 8 O -0.372 6.372 9 C -0.158 4.158 10 C 0.052 3.948 11 H 0.069 0.931 12 C -0.604 4.604 13 H 0.063 0.937 14 C -0.174 4.174 15 N -0.542 5.542 16 Si 0.896 3.104 17 H -0.218 1.218 18 H -0.217 1.217 19 H -0.211 1.211 20 C -0.031 4.031 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.172 4.172 24 C -0.143 4.143 25 C -0.149 4.149 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.225 0.775 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.294 13.484 -0.135 14.152 hybrid contribution 1.447 1.120 0.905 2.041 sum 5.742 14.604 0.770 15.711 Atomic orbital electron populations 1.21928 0.95022 1.02453 1.01588 1.21041 0.96178 0.96002 0.98101 1.21834 1.00839 0.95950 1.01715 1.21852 1.01153 0.94723 0.98577 1.21277 0.99711 0.90885 0.88569 1.46192 1.60206 1.10448 1.23775 1.20858 0.79603 0.80889 0.88824 1.90743 1.37473 1.65424 1.43580 1.21683 0.99287 0.99491 0.95296 1.17871 0.96810 0.87772 0.92302 0.93108 1.21547 0.89376 1.13367 1.36137 0.93675 1.25575 1.06394 0.92247 0.93137 1.70721 1.09132 1.31134 1.43249 0.83595 0.75041 0.75337 0.76464 1.21837 1.21685 1.21106 1.20831 0.90887 0.95143 0.96211 1.20917 0.99143 1.00330 0.92268 1.21011 0.98054 0.97391 0.98311 1.20823 1.00351 0.99743 0.96246 1.20964 1.00455 0.99729 0.93103 1.21069 0.97789 0.97707 0.98290 0.92815 0.91942 0.92694 0.90949 0.92765 0.92718 0.92717 0.91435 0.91536 0.92237 0.91705 0.77549 0.90347 0.91748 0.91846 0.86745 0.87458 0.87595 0.87469 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.95 37.16 0.33 -1.09 16 2 C -0.09 -0.84 2.92 -90.62 -0.26 -1.11 16 3 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.13 -1.22 4.80 -26.73 -0.13 -1.35 16 5 C 0.12 1.64 5.43 -4.04 -0.02 1.62 16 6 N -0.75 -11.34 5.56 -60.29 -0.33 -11.67 16 7 C 0.51 10.41 7.58 -10.98 -0.08 10.33 16 8 O -0.50 -12.79 15.02 5.55 0.08 -12.71 16 9 C -0.12 -2.31 4.94 -27.88 -0.14 -2.44 16 10 C 0.07 1.73 1.31 -92.92 -0.12 1.61 16 11 H 0.05 1.39 6.23 -51.93 -0.32 1.06 16 12 C -0.57 -15.60 6.40 -34.44 -0.22 -15.82 16 13 H 0.04 1.25 7.82 -52.49 -0.41 0.84 16 14 C 0.03 0.93 5.45 -17.82 -0.10 0.84 16 15 N -0.91 -27.98 13.63 55.43 0.76 -27.22 16 16 Si 1.07 26.69 29.91 -169.99 -5.08 21.60 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 21 C -0.11 -2.23 8.88 -39.59 -0.35 -2.58 16 22 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 24 C -0.12 -2.31 10.05 -39.59 -0.40 -2.70 16 25 C -0.13 -2.76 9.67 -39.59 -0.38 -3.14 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.99 6.56 -51.93 -0.34 0.65 16 37 H 0.39 4.60 8.47 -40.82 -0.35 4.26 16 38 H 0.08 1.44 7.86 -51.93 -0.41 1.03 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.27 8.24 6.68 -40.82 -0.27 7.97 16 41 H 0.11 2.29 7.80 -52.48 -0.41 1.88 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -33.41 367.41 -9.43 -42.84 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.56 Total: 5.23 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -2.83 Total: -23.61 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.42 Total: -38.90 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -5.08 Total: 21.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.41 -9.43 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353359352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.350 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds