Wall clock time and date at job start Tue Mar 31 2020 07:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47311 * 2 1 4 4 C 1.53001 * 109.47114 * 120.00024 * 2 1 3 5 5 C 1.53001 * 109.47256 * 64.99731 * 4 2 1 6 6 N 1.46503 * 109.47206 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99939 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00090 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99980 * 179.97438 * 7 6 5 10 10 C 1.52994 * 109.46995 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47363 * 54.05802 * 10 9 7 12 12 C 1.50705 * 109.47281 * 294.05789 * 10 9 7 13 13 H 1.07999 * 119.99468 * 330.08103 * 12 10 9 14 14 C 1.37873 * 120.00025 * 150.08844 * 12 10 9 15 15 N 1.31511 * 120.00099 * 6.55948 * 14 12 10 16 16 Si 1.86805 * 119.99647 * 186.56809 * 14 12 10 17 17 H 1.48498 * 109.47129 * 269.99471 * 16 14 12 18 18 H 1.48498 * 109.47291 * 29.99590 * 16 14 12 19 19 H 1.48503 * 109.46813 * 149.99580 * 16 14 12 20 20 C 1.50704 * 109.47072 * 174.05777 * 10 9 7 21 21 C 1.38232 * 120.00156 * 64.29986 * 20 10 9 22 22 C 1.38227 * 120.00423 * 179.81276 * 21 20 10 23 23 C 1.38243 * 119.99751 * 0.39675 * 22 21 20 24 24 C 1.38236 * 119.99618 * 359.85625 * 23 22 21 25 25 C 1.38229 * 120.00074 * 359.95579 * 24 23 22 26 26 H 1.08996 * 109.47076 * 59.99718 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47013 * 300.00030 * 1 2 3 29 29 H 1.09000 * 109.47073 * 239.99416 * 2 1 3 30 30 H 1.08998 * 109.47101 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46978 * 299.99741 * 3 2 1 32 32 H 1.09000 * 109.47107 * 60.00027 * 3 2 1 33 33 H 1.08999 * 109.47013 * 305.00004 * 4 2 1 34 34 H 1.09001 * 109.47663 * 184.99947 * 4 2 1 35 35 H 1.08997 * 109.47176 * 59.99743 * 5 4 2 36 36 H 1.09002 * 109.47082 * 299.99871 * 5 4 2 37 37 H 0.97001 * 120.00018 * 359.97438 * 6 5 4 38 38 H 1.08999 * 109.46642 * 59.99829 * 9 7 6 39 39 H 1.09002 * 109.46876 * 299.99722 * 9 7 6 40 40 H 0.96995 * 120.00371 * 354.73583 * 15 14 12 41 41 H 1.08007 * 119.99790 * 359.97438 * 21 20 10 42 42 H 1.08004 * 120.00499 * 180.23296 * 22 21 20 43 43 H 1.08002 * 119.99679 * 179.83680 * 23 22 21 44 44 H 1.08002 * 119.99754 * 179.97438 * 24 23 22 45 45 H 1.08000 * 119.99707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1230 -2.8860 2.3845 7 6 1.8829 -4.2020 2.5480 8 8 1.2625 -4.8146 1.7049 9 6 2.3852 -4.9124 3.7786 10 6 1.9803 -6.3865 3.7173 11 1 2.3253 -6.8195 2.7784 12 6 0.4798 -6.4993 3.8010 13 1 -0.0877 -5.7596 4.3462 14 6 -0.1685 -7.5467 3.1817 15 7 0.5274 -8.5160 2.6287 16 14 -2.0353 -7.5889 3.1280 17 1 -2.5489 -8.3040 4.3238 18 1 -2.5617 -6.2004 3.1175 19 1 -2.4792 -8.2960 1.8998 20 6 2.6048 -7.1274 4.8716 21 6 2.2463 -6.8139 6.1692 22 6 2.8162 -7.4961 7.2278 23 6 3.7510 -8.4862 6.9890 24 6 4.1134 -8.7961 5.6915 25 6 3.5405 -8.1165 4.6328 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 2.0697 -2.6550 0.3003 36 1 0.5488 -2.2724 1.1422 37 1 2.6195 -2.3961 3.0587 38 1 1.9503 -4.4530 4.6662 39 1 3.4715 -4.8353 3.8246 40 1 1.4947 -8.4569 2.5889 41 1 1.5188 -6.0377 6.3560 42 1 2.5333 -7.2537 8.2416 43 1 4.1982 -9.0174 7.8162 44 1 4.8439 -9.5693 5.5049 45 1 3.8233 -8.3589 3.6191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353359352.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:43 Heat of formation + Delta-G solvation = -64.835948 kcal Electronic energy + Delta-G solvation = -22750.981841 eV Core-core repulsion = 19538.158956 eV Total energy + Delta-G solvation = -3212.822885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79890 -39.84164 -37.95780 -36.13855 -35.11458 -33.29325 -31.61155 -30.98051 -29.61213 -28.03138 -26.94266 -24.93585 -23.75251 -23.17240 -21.87806 -21.37486 -20.60517 -18.80990 -17.95082 -17.26290 -16.95376 -16.70386 -16.23979 -15.68881 -15.65221 -15.57077 -14.98275 -14.82220 -14.63541 -14.32777 -14.03995 -13.95081 -13.72479 -13.42090 -13.16771 -13.06628 -12.77861 -12.64661 -12.60095 -12.38532 -12.07481 -11.97386 -11.81617 -11.70298 -11.59445 -11.52361 -11.48184 -10.73688 -10.62668 -10.31062 -9.95828 -9.64337 -9.27216 -8.45585 -6.11094 0.67647 0.73928 1.46269 1.58541 1.71811 1.89294 2.36273 2.60238 3.10514 3.38399 3.84201 3.91787 3.99369 4.13209 4.15029 4.28231 4.29879 4.31132 4.43547 4.47126 4.49430 4.61523 4.67238 4.76272 4.81067 4.83180 4.86745 4.96512 4.99155 5.06100 5.12114 5.15280 5.23367 5.30981 5.40969 5.42612 5.44849 5.48571 5.61662 5.74446 5.82426 5.94374 6.24057 6.30639 6.39281 6.73558 6.78691 7.53131 7.64730 8.94894 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.004110 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.957319 B = 6810.652613 C = 8125.621362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.141 4.141 4 C -0.112 4.112 5 C 0.118 3.882 6 N -0.727 5.727 7 C 0.508 3.492 8 O -0.564 6.564 9 C -0.111 4.111 10 C 0.073 3.927 11 H 0.006 0.994 12 C -0.557 4.557 13 H 0.039 0.961 14 C -0.025 4.025 15 N -0.943 5.943 16 Si 1.102 2.898 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.291 1.291 20 C -0.054 4.054 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.145 4.145 24 C -0.125 4.125 25 C -0.154 4.154 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.413 0.587 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.257 0.743 41 H 0.114 0.886 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 16.600 3.613 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.150 4.150 5 C -0.005 4.005 6 N -0.382 5.382 7 C 0.295 3.705 8 O -0.441 6.441 9 C -0.151 4.151 10 C 0.053 3.947 11 H 0.024 0.976 12 C -0.595 4.595 13 H 0.057 0.943 14 C -0.224 4.224 15 N -0.581 5.581 16 Si 0.927 3.073 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.218 1.218 20 C -0.055 4.055 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.162 4.162 24 C -0.143 4.143 25 C -0.172 4.172 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.249 0.751 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.132 0.868 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.330 15.257 2.523 16.357 hybrid contribution 1.242 0.657 0.137 1.412 sum 6.573 15.915 2.660 17.423 Atomic orbital electron populations 1.21932 0.95518 1.01252 1.02355 1.21052 0.95777 0.97123 0.97408 1.21789 1.01276 0.94461 1.02340 1.21793 1.02213 0.91431 0.99568 1.21383 0.98533 0.93364 0.87270 1.45950 1.58859 1.08877 1.24526 1.21047 0.78850 0.82289 0.88279 1.90723 1.40624 1.67160 1.45604 1.21584 1.01111 0.96738 0.95698 1.17705 0.95094 0.90572 0.91305 0.97570 1.21812 0.91427 1.11949 1.34279 0.94298 1.26743 1.09709 0.92601 0.93320 1.70814 1.08495 1.32662 1.46166 0.83132 0.71437 0.75934 0.76839 1.19773 1.20590 1.21756 1.20609 0.92594 0.96040 0.96262 1.21010 0.99770 1.01224 0.92153 1.21414 0.97079 0.96461 0.99223 1.21314 0.99229 0.98917 0.96787 1.21299 1.00388 0.99644 0.92958 1.21127 0.98906 0.98491 0.98703 0.91887 0.94092 0.92139 0.91516 0.92033 0.92130 0.92113 0.90230 0.89902 0.93721 0.93551 0.75089 0.88517 0.88941 0.93179 0.86758 0.83869 0.83513 0.84725 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.95 71.98 0.64 -2.12 16 2 C -0.09 -1.56 2.92 -10.79 -0.03 -1.60 16 3 C -0.14 -1.77 9.19 71.98 0.66 -1.10 16 4 C -0.11 -1.99 4.80 30.59 0.15 -1.84 16 5 C 0.12 3.25 5.43 86.38 0.47 3.72 16 6 N -0.73 -21.56 5.56 -463.05 -2.57 -24.13 16 7 C 0.51 21.13 7.58 87.66 0.66 21.80 16 8 O -0.56 -30.40 15.02 -3.04 -0.05 -30.45 16 9 C -0.11 -4.40 4.94 29.85 0.15 -4.25 16 10 C 0.07 3.65 1.31 -12.29 -0.02 3.63 16 11 H 0.01 0.36 6.23 -2.39 -0.01 0.34 16 12 C -0.56 -31.62 6.40 25.60 0.16 -31.46 16 13 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 14 C -0.03 -1.54 5.45 84.65 0.46 -1.08 16 15 N -0.94 -61.10 13.63 21.45 0.29 -60.80 16 16 Si 1.10 55.11 29.91 68.60 2.05 57.16 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 20 C -0.05 -2.47 4.77 -19.87 -0.09 -2.56 16 21 C -0.12 -4.92 8.88 22.27 0.20 -4.72 16 22 C -0.12 -4.07 10.05 22.27 0.22 -3.84 16 23 C -0.14 -4.50 10.05 22.27 0.22 -4.27 16 24 C -0.12 -4.38 10.05 22.27 0.22 -4.16 16 25 C -0.15 -6.62 9.67 22.27 0.22 -6.40 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.04 0.90 6.56 -2.39 -0.02 0.89 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.47 6.56 -2.39 -0.02 1.45 16 37 H 0.41 8.81 8.47 -92.71 -0.79 8.03 16 38 H 0.10 3.45 7.86 -2.39 -0.02 3.43 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.26 16.82 6.68 -92.71 -0.62 16.20 16 41 H 0.11 4.44 7.80 -2.91 -0.02 4.42 16 42 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 44 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 45 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -77.34 367.41 4.34 -73.00 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.32 Total: 25.49 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 4.30 Total: -40.26 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -2.28 Total: -84.93 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 14 Polarization: 55.11 SS G_CDS: 2.05 Total: 57.16 kcal Total: -77.34 4.34 -73.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353359352.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.162 kcal (2) G-P(sol) polarization free energy of solvation -77.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds