Wall clock time and date at job start Tue Mar 31 2020 07:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47079 * 2 1 4 4 C 1.52999 * 109.47089 * 120.00361 * 2 1 3 5 5 C 1.52993 * 109.47399 * 64.99574 * 4 2 1 6 6 N 1.46505 * 109.47066 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99960 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00194 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47010 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47465 * 305.00010 * 10 9 7 12 12 C 1.50698 * 109.47080 * 65.00685 * 10 9 7 13 13 H 1.08002 * 120.00223 * 26.94016 * 12 10 9 14 14 C 1.37886 * 120.00006 * 206.93845 * 12 10 9 15 15 N 1.31507 * 120.00030 * 186.61954 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 6.90022 * 14 12 10 17 17 H 1.48503 * 109.46742 * 274.25466 * 16 14 12 18 18 H 1.48500 * 109.47460 * 34.25082 * 16 14 12 19 19 H 1.48499 * 109.46928 * 154.25467 * 16 14 12 20 20 C 1.50706 * 109.46940 * 184.99987 * 10 9 7 21 21 C 1.38233 * 119.99857 * 297.92917 * 20 10 9 22 22 C 1.38240 * 119.99757 * 179.78388 * 21 20 10 23 23 C 1.38239 * 119.99979 * 0.44453 * 22 21 20 24 24 C 1.38242 * 120.00017 * 359.80708 * 23 22 21 25 25 C 1.38230 * 119.99928 * 118.19592 * 20 10 9 26 26 H 1.09002 * 109.46645 * 299.99866 * 1 2 3 27 27 H 1.08994 * 109.47058 * 59.99942 * 1 2 3 28 28 H 1.08993 * 109.46661 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46645 * 240.00134 * 2 1 3 30 30 H 1.09005 * 109.47067 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47223 * 299.99957 * 3 2 1 32 32 H 1.08996 * 109.47051 * 60.00183 * 3 2 1 33 33 H 1.09000 * 109.46973 * 304.99745 * 4 2 1 34 34 H 1.09005 * 109.47120 * 185.00300 * 4 2 1 35 35 H 1.09000 * 109.46918 * 60.00137 * 5 4 2 36 36 H 1.09000 * 109.47323 * 300.00056 * 5 4 2 37 37 H 0.96995 * 120.00055 * 0.02562 * 6 5 4 38 38 H 1.09000 * 109.46914 * 60.00574 * 9 7 6 39 39 H 1.09000 * 109.47087 * 300.00639 * 9 7 6 40 40 H 0.96994 * 119.99996 * 180.27656 * 15 14 12 41 41 H 1.07994 * 120.00554 * 359.97438 * 21 20 10 42 42 H 1.07996 * 120.00426 * 180.26872 * 22 21 20 43 43 H 1.08000 * 120.00114 * 179.82966 * 23 22 21 44 44 H 1.07993 * 120.00100 * 180.02562 * 24 23 22 45 45 H 1.07999 * 120.00162 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1241 -2.8862 2.3838 7 6 1.8833 -4.2021 2.5478 8 8 1.2623 -4.8145 1.7050 9 6 2.3857 -4.9126 3.7782 10 6 1.9809 -6.3868 3.7168 11 1 0.9020 -6.4621 3.5816 12 6 2.6800 -7.0519 2.5592 13 1 3.6259 -6.6679 2.2067 14 6 2.1120 -8.1507 1.9500 15 7 2.7794 -8.8097 1.0282 16 14 0.3914 -8.6985 2.4284 17 1 0.4676 -9.5918 3.6122 18 1 -0.4331 -7.5084 2.7588 19 1 -0.2281 -9.4307 1.2947 20 6 2.3751 -7.0698 5.0010 21 6 3.7066 -7.1410 5.3656 22 6 4.0678 -7.7636 6.5458 23 6 3.0982 -8.3231 7.3569 24 6 1.7671 -8.2564 6.9898 25 6 1.4057 -7.6300 5.8117 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2951 35 1 2.0698 -2.6550 0.3002 36 1 0.5489 -2.2724 1.1421 37 1 2.6205 -2.3964 3.0580 38 1 1.9513 -4.4529 4.6659 39 1 3.4720 -4.8360 3.8239 40 1 2.3782 -9.5803 0.5968 41 1 4.4645 -6.7075 4.7299 42 1 5.1076 -7.8154 6.8328 43 1 3.3806 -8.8119 8.2776 44 1 1.0096 -8.6931 7.6237 45 1 0.3658 -7.5778 5.5250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353359353.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:46 Heat of formation + Delta-G solvation = -39.080302 kcal Electronic energy + Delta-G solvation = -22759.148016 eV Core-core repulsion = 19547.441980 eV Total energy + Delta-G solvation = -3211.706037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.23300 -38.39668 -36.97112 -34.25993 -33.66448 -31.64558 -30.20298 -29.67317 -28.42145 -27.33764 -25.84695 -23.25874 -22.33599 -21.80178 -20.49573 -19.92664 -19.02651 -16.93638 -16.50876 -15.94017 -15.61587 -15.52205 -14.68341 -14.48473 -14.22819 -14.04474 -13.74468 -13.66716 -13.04558 -12.83988 -12.68945 -12.57125 -12.39582 -12.23717 -11.95749 -11.86063 -11.80659 -11.48033 -11.08637 -10.98200 -10.79782 -10.77663 -10.71541 -10.48103 -10.32320 -9.86677 -9.57919 -9.12721 -8.89002 -8.54755 -8.40857 -8.19657 -7.80086 -5.96163 -3.91669 2.10740 2.16497 3.43089 3.48435 3.51506 3.52652 3.70218 4.54050 4.59106 4.68777 4.71342 4.79007 5.20184 5.29809 5.34510 5.45811 5.50522 5.52959 5.57171 5.58566 5.64265 5.69048 5.70956 5.76648 5.93793 5.96538 5.99042 6.02790 6.05394 6.11063 6.25291 6.25903 6.26182 6.34904 6.61876 6.71448 6.84458 6.94121 7.07305 7.15585 7.28213 7.61501 7.73746 7.84612 8.08457 8.55795 9.02522 9.06191 9.68413 11.17099 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.003976 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.127732 B = 7040.093614 C = 7930.208978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.125 4.125 5 C 0.119 3.881 6 N -0.750 5.750 7 C 0.512 3.488 8 O -0.502 6.502 9 C -0.115 4.115 10 C 0.048 3.952 11 H 0.053 0.947 12 C -0.481 4.481 13 H 0.071 0.929 14 C 0.083 3.917 15 N -0.900 5.900 16 Si 0.867 3.133 17 H -0.275 1.275 18 H -0.261 1.261 19 H -0.292 1.292 20 C -0.039 4.039 21 C -0.101 4.101 22 C -0.126 4.126 23 C -0.150 4.150 24 C -0.124 4.124 25 C -0.139 4.139 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.392 0.608 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.262 0.738 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 15.879 6.023 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.163 4.163 5 C -0.005 4.005 6 N -0.405 5.405 7 C 0.298 3.702 8 O -0.374 6.374 9 C -0.155 4.155 10 C 0.028 3.972 11 H 0.071 0.929 12 C -0.518 4.518 13 H 0.089 0.911 14 C -0.119 4.119 15 N -0.538 5.538 16 Si 0.695 3.305 17 H -0.200 1.200 18 H -0.186 1.186 19 H -0.218 1.218 20 C -0.039 4.039 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.168 4.168 24 C -0.143 4.143 25 C -0.157 4.157 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.225 0.775 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.425 15.233 5.236 16.170 hybrid contribution -0.595 -0.306 0.411 0.785 sum -2.020 14.926 5.647 16.086 Atomic orbital electron populations 1.21924 0.95133 1.02328 1.01530 1.21047 0.96079 0.96037 0.98232 1.21831 1.00929 0.95924 1.01651 1.21848 1.01316 0.94679 0.98454 1.21285 0.99426 0.90921 0.88841 1.46155 1.60201 1.10319 1.23816 1.20824 0.79790 0.80714 0.88859 1.90738 1.38328 1.64867 1.43433 1.21614 1.01863 0.97958 0.94115 1.18245 0.98637 0.89251 0.91037 0.92857 1.20595 1.07177 1.12112 1.11953 0.91083 1.24864 0.96916 0.95701 0.94381 1.69886 1.37364 1.19573 1.26929 0.86959 0.86573 0.78855 0.78066 1.20041 1.18606 1.21823 1.20780 0.92967 0.95752 0.94437 1.20954 0.96246 0.99347 0.95355 1.21058 0.98492 0.99334 0.95576 1.20859 0.93320 1.02583 1.00042 1.20955 0.95943 1.00243 0.97112 1.21061 0.99049 1.00619 0.95008 0.92766 0.92831 0.92025 0.90839 0.92698 0.92739 0.92767 0.91523 0.91407 0.91925 0.91896 0.77479 0.91332 0.89791 0.92861 0.86231 0.87161 0.87401 0.87352 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.95 37.16 0.33 -1.03 16 2 C -0.09 -0.85 2.92 -90.62 -0.26 -1.11 16 3 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.13 -1.20 4.80 -26.73 -0.13 -1.33 16 5 C 0.12 1.61 5.43 -4.04 -0.02 1.59 16 6 N -0.75 -11.03 5.56 -60.29 -0.33 -11.36 16 7 C 0.51 10.13 7.58 -10.99 -0.08 10.04 16 8 O -0.50 -12.56 14.98 5.56 0.08 -12.47 16 9 C -0.12 -2.16 4.93 -27.88 -0.14 -2.30 16 10 C 0.05 1.10 1.21 -92.92 -0.11 0.99 16 11 H 0.05 1.34 4.87 -51.93 -0.25 1.08 16 12 C -0.48 -13.42 6.97 -34.44 -0.24 -13.66 16 13 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 14 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 15 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 16 Si 0.87 23.02 26.62 -169.99 -4.52 18.49 16 17 H -0.27 -7.08 7.11 56.52 0.40 -6.67 16 18 H -0.26 -6.78 6.29 56.52 0.36 -6.42 16 19 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 20 C -0.04 -0.82 4.52 -104.62 -0.47 -1.30 16 21 C -0.10 -1.99 8.86 -39.58 -0.35 -2.34 16 22 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 23 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 24 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.14 -2.79 9.08 -39.58 -0.36 -3.15 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.90 6.56 -51.93 -0.34 0.56 16 37 H 0.39 4.41 8.47 -40.82 -0.35 4.07 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 40 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 41 H 0.12 2.31 7.72 -52.49 -0.40 1.90 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 2.11 7.91 -52.49 -0.42 1.70 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -34.02 363.42 -8.91 -42.94 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.60 Total: 4.56 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -2.79 Total: -19.99 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.44 Total: -39.00 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.52 Total: 18.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.02 -8.91 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353359353.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.858 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds