Wall clock time and date at job start Tue Mar 31 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46763 * 2 1 4 4 C 1.52997 * 109.47040 * 59.99779 * 3 2 1 5 5 C 1.52996 * 109.47234 * 299.99812 * 3 2 1 6 6 N 1.46502 * 109.46864 * 179.97438 * 3 2 1 7 7 C 1.34777 * 119.99559 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00046 * 0.02562 * 7 6 3 9 9 C 1.50698 * 119.99686 * 180.02562 * 7 6 3 10 10 C 1.53005 * 109.46990 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46934 * 305.97546 * 10 9 7 12 12 C 1.50700 * 109.47299 * 65.97885 * 10 9 7 13 13 H 1.08008 * 119.99531 * 26.90748 * 12 10 9 14 14 C 1.37869 * 120.00160 * 206.90965 * 12 10 9 15 15 N 1.31513 * 119.99678 * 353.27932 * 14 12 10 16 16 Si 1.86806 * 120.00073 * 173.54969 * 14 12 10 17 17 H 1.48497 * 109.46895 * 179.72442 * 16 14 12 18 18 H 1.48495 * 109.46957 * 299.72695 * 16 14 12 19 19 H 1.48501 * 109.46761 * 59.72686 * 16 14 12 20 20 C 1.50705 * 109.47056 * 185.97689 * 10 9 7 21 21 C 1.38237 * 120.00118 * 294.44966 * 20 10 9 22 22 C 1.38237 * 119.99818 * 179.78603 * 21 20 10 23 23 C 1.38236 * 120.00003 * 0.44191 * 22 21 20 24 24 C 1.38236 * 119.99991 * 359.81061 * 23 22 21 25 25 C 1.38228 * 119.99825 * 114.71859 * 20 10 9 26 26 H 1.08995 * 109.47188 * 60.00767 * 1 2 3 27 27 H 1.09008 * 109.46508 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47339 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47339 * 240.00058 * 2 1 3 30 30 H 1.09005 * 109.46965 * 119.99703 * 2 1 3 31 31 H 1.09005 * 109.47271 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47520 * 299.99848 * 4 3 2 33 33 H 1.09005 * 109.47303 * 59.99920 * 4 3 2 34 34 H 1.09008 * 109.47266 * 300.00195 * 5 3 2 35 35 H 1.09002 * 109.47328 * 59.99895 * 5 3 2 36 36 H 1.08993 * 109.47195 * 180.02562 * 5 3 2 37 37 H 0.97002 * 120.00062 * 0.02562 * 6 3 2 38 38 H 1.09000 * 109.47229 * 60.00363 * 9 7 6 39 39 H 1.09003 * 109.47630 * 300.00294 * 9 7 6 40 40 H 0.96999 * 120.00609 * 354.68773 * 15 14 12 41 41 H 1.08005 * 119.99967 * 359.97438 * 21 20 10 42 42 H 1.07999 * 119.99448 * 180.27078 * 22 21 20 43 43 H 1.07997 * 119.99991 * 179.83259 * 23 22 21 44 44 H 1.07993 * 119.99965 * 180.02562 * 24 23 22 45 45 H 1.07999 * 120.00249 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5298 2.1638 1.2492 5 6 1.5299 2.1638 -1.2492 6 7 3.5049 1.4426 0.0006 7 6 4.1787 2.6099 0.0002 8 8 3.5722 3.6602 -0.0002 9 6 5.6857 2.6099 0.0003 10 6 6.1956 4.0525 0.0004 11 1 5.7476 4.5963 -0.8312 12 6 5.8177 4.7188 1.2982 13 1 5.6780 4.1249 2.1894 14 6 5.6503 6.0864 1.3478 15 7 5.9476 6.8237 0.3001 16 14 5.0081 6.8929 2.9056 17 1 4.9258 8.3619 2.7046 18 1 3.6580 6.3596 3.2187 19 1 5.9302 6.5982 4.0317 20 6 7.6954 4.0552 -0.1475 21 6 8.4894 3.5233 0.8513 22 6 9.8649 3.5218 0.7136 23 6 10.4468 4.0604 -0.4188 24 6 9.6530 4.5969 -1.4152 25 6 8.2773 4.5945 -1.2794 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.8935 3.1914 1.2495 32 1 0.4398 2.1638 1.2492 33 1 1.8932 1.6500 2.1393 34 1 1.8933 1.6499 -2.1393 35 1 0.4399 2.1637 -1.2493 36 1 1.8936 3.1913 -1.2494 37 1 3.9900 0.6026 0.0006 38 1 6.0491 2.0958 -0.8895 39 1 6.0491 2.0964 0.8904 40 1 6.3566 6.4163 -0.4794 41 1 8.0349 3.1062 1.7379 42 1 10.4850 3.1023 1.4920 43 1 11.5215 4.0616 -0.5251 44 1 10.1075 5.0173 -2.3000 45 1 7.6572 5.0136 -2.0580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354103620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:52 Heat of formation + Delta-G solvation = -33.240690 kcal Electronic energy + Delta-G solvation = -23642.499460 eV Core-core repulsion = 20431.046648 eV Total energy + Delta-G solvation = -3211.452812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66516 -38.47102 -36.67509 -34.18349 -32.46364 -31.25838 -30.10191 -29.70168 -28.47508 -27.03496 -25.23023 -24.16608 -22.82343 -21.66349 -20.35999 -19.36772 -18.99909 -16.97893 -16.41923 -16.01591 -15.46246 -14.81232 -14.67595 -14.20324 -14.04069 -13.75012 -13.63219 -13.18388 -13.11783 -12.67431 -12.45686 -12.32104 -12.28110 -12.11003 -11.78792 -11.61076 -11.55454 -11.34765 -11.08704 -10.92398 -10.70555 -10.59503 -10.53016 -10.41798 -10.10257 -10.02485 -9.65630 -8.80258 -8.56963 -8.49696 -8.24328 -8.12906 -7.62082 -6.19743 -3.88336 2.20028 2.25803 3.50569 3.54787 3.56616 3.68703 3.72439 4.62274 4.69604 4.77029 4.91647 5.15606 5.37281 5.40840 5.46536 5.53150 5.60446 5.64503 5.72668 5.77770 5.82835 5.93046 5.94731 5.97398 6.03387 6.10429 6.12044 6.16617 6.21589 6.22482 6.33038 6.44203 6.63332 6.70526 6.74226 6.81213 6.94541 7.09184 7.22505 7.24673 7.39817 7.75043 7.87152 8.15443 8.26249 8.54418 8.99529 9.12218 9.80209 11.19653 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.005219 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.681418 B = 5363.967928 C = 6573.096412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.176 3.824 4 C -0.165 4.165 5 C -0.164 4.164 6 N -0.744 5.744 7 C 0.516 3.484 8 O -0.494 6.494 9 C -0.118 4.118 10 C 0.074 3.926 11 H 0.049 0.951 12 C -0.564 4.564 13 H 0.044 0.956 14 C 0.032 3.968 15 N -0.907 5.907 16 Si 1.059 2.941 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.291 1.291 20 C -0.032 4.032 21 C -0.107 4.107 22 C -0.130 4.130 23 C -0.153 4.153 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.390 0.610 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -13.836 -1.857 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.090 3.910 4 C -0.223 4.223 5 C -0.222 4.222 6 N -0.399 5.399 7 C 0.302 3.698 8 O -0.366 6.366 9 C -0.158 4.158 10 C 0.055 3.945 11 H 0.067 0.933 12 C -0.602 4.602 13 H 0.062 0.938 14 C -0.173 4.173 15 N -0.542 5.542 16 Si 0.888 3.112 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.218 1.218 20 C -0.033 4.033 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.171 4.171 24 C -0.143 4.143 25 C -0.149 4.149 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.223 0.777 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.255 -11.547 -1.210 12.366 hybrid contribution 0.846 -1.899 -0.512 2.141 sum -3.408 -13.446 -1.722 13.978 Atomic orbital electron populations 1.21849 0.95024 1.01494 1.02558 1.21756 0.96745 0.95642 1.02051 1.20166 0.80414 0.94562 0.95853 1.22274 1.00315 1.03459 0.96271 1.22262 1.00497 1.03127 0.96302 1.46329 1.05910 1.08824 1.78807 1.20753 0.90458 0.83040 0.75514 1.90677 1.69537 1.30885 1.45525 1.21674 0.91263 1.01576 1.01294 1.17854 0.86248 0.90362 1.00078 0.93264 1.21508 1.50551 0.94231 0.93893 0.93769 1.25543 0.94847 0.94365 1.02562 1.70729 1.38865 1.39105 1.05515 0.83702 0.76362 0.76265 0.74848 1.20985 1.21505 1.21798 1.20870 0.98870 0.92225 0.91326 1.20925 0.92622 1.00254 0.98657 1.21016 0.95202 1.01123 0.97508 1.20822 0.98553 1.02321 0.95402 1.20965 0.94114 1.00548 0.98677 1.21074 0.94312 1.01225 0.98247 0.92168 0.92825 0.92091 0.91751 0.91676 0.89712 0.92402 0.93164 0.93284 0.92280 0.90037 0.77713 0.91864 0.90461 0.91809 0.86721 0.87478 0.87604 0.87475 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.21 37.16 0.34 -1.03 16 2 C -0.12 -1.26 5.10 -26.73 -0.14 -1.40 16 3 C 0.18 2.41 0.83 -131.82 -0.11 2.30 16 4 C -0.17 -2.50 8.05 37.16 0.30 -2.20 16 5 C -0.16 -2.36 8.05 37.16 0.30 -2.06 16 6 N -0.74 -11.08 5.11 -47.61 -0.24 -11.32 16 7 C 0.52 10.11 7.00 -10.99 -0.08 10.03 16 8 O -0.49 -11.87 11.23 5.55 0.06 -11.81 16 9 C -0.12 -2.28 4.95 -27.88 -0.14 -2.42 16 10 C 0.07 1.76 1.23 -92.92 -0.11 1.65 16 11 H 0.05 1.33 6.59 -51.93 -0.34 0.99 16 12 C -0.56 -15.30 6.35 -34.44 -0.22 -15.52 16 13 H 0.04 1.21 7.82 -52.48 -0.41 0.80 16 14 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 15 N -0.91 -27.75 13.56 55.43 0.75 -27.00 16 16 Si 1.06 26.35 29.91 -169.99 -5.08 21.27 16 17 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.03 -0.72 4.53 -104.62 -0.47 -1.19 16 21 C -0.11 -2.19 8.90 -39.58 -0.35 -2.54 16 22 C -0.13 -2.37 10.05 -39.58 -0.40 -2.76 16 23 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 24 C -0.12 -2.31 10.05 -39.58 -0.40 -2.71 16 25 C -0.13 -2.74 9.18 -39.58 -0.36 -3.10 16 26 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 27 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.64 6.17 -51.93 -0.32 1.32 16 32 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 35 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 36 H 0.08 1.48 6.17 -51.93 -0.32 1.16 16 37 H 0.39 4.64 8.47 -40.82 -0.35 4.29 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.41 7.96 -51.93 -0.41 1.00 16 40 H 0.27 8.16 6.24 -40.82 -0.25 7.91 16 41 H 0.11 2.31 7.85 -52.48 -0.41 1.90 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 44 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 45 H 0.11 2.28 7.95 -52.49 -0.42 1.86 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -32.25 354.06 -8.68 -40.93 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.17 Total: 7.79 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -2.33 Total: -25.19 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.51 Total: -38.32 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.06 Total: -11.81 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.08 Total: 21.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.25 -8.68 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354103620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.693 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds