Wall clock time and date at job start Tue Mar 31 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46763 * 2 1 4 4 C 1.52997 * 109.47040 * 59.99779 * 3 2 1 5 5 C 1.52996 * 109.47234 * 299.99812 * 3 2 1 6 6 N 1.46502 * 109.46864 * 179.97438 * 3 2 1 7 7 C 1.34777 * 119.99559 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00046 * 0.02562 * 7 6 3 9 9 C 1.50698 * 119.99686 * 180.02562 * 7 6 3 10 10 C 1.53005 * 109.46990 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.46934 * 305.97546 * 10 9 7 12 12 C 1.50700 * 109.47299 * 65.97885 * 10 9 7 13 13 H 1.08008 * 119.99531 * 26.90748 * 12 10 9 14 14 C 1.37869 * 120.00160 * 206.90965 * 12 10 9 15 15 N 1.31513 * 119.99678 * 353.27932 * 14 12 10 16 16 Si 1.86806 * 120.00073 * 173.54969 * 14 12 10 17 17 H 1.48497 * 109.46895 * 179.72442 * 16 14 12 18 18 H 1.48495 * 109.46957 * 299.72695 * 16 14 12 19 19 H 1.48501 * 109.46761 * 59.72686 * 16 14 12 20 20 C 1.50705 * 109.47056 * 185.97689 * 10 9 7 21 21 C 1.38237 * 120.00118 * 294.44966 * 20 10 9 22 22 C 1.38237 * 119.99818 * 179.78603 * 21 20 10 23 23 C 1.38236 * 120.00003 * 0.44191 * 22 21 20 24 24 C 1.38236 * 119.99991 * 359.81061 * 23 22 21 25 25 C 1.38228 * 119.99825 * 114.71859 * 20 10 9 26 26 H 1.08995 * 109.47188 * 60.00767 * 1 2 3 27 27 H 1.09008 * 109.46508 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47339 * 299.99942 * 1 2 3 29 29 H 1.08998 * 109.47339 * 240.00058 * 2 1 3 30 30 H 1.09005 * 109.46965 * 119.99703 * 2 1 3 31 31 H 1.09005 * 109.47271 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47520 * 299.99848 * 4 3 2 33 33 H 1.09005 * 109.47303 * 59.99920 * 4 3 2 34 34 H 1.09008 * 109.47266 * 300.00195 * 5 3 2 35 35 H 1.09002 * 109.47328 * 59.99895 * 5 3 2 36 36 H 1.08993 * 109.47195 * 180.02562 * 5 3 2 37 37 H 0.97002 * 120.00062 * 0.02562 * 6 3 2 38 38 H 1.09000 * 109.47229 * 60.00363 * 9 7 6 39 39 H 1.09003 * 109.47630 * 300.00294 * 9 7 6 40 40 H 0.96999 * 120.00609 * 354.68773 * 15 14 12 41 41 H 1.08005 * 119.99967 * 359.97438 * 21 20 10 42 42 H 1.07999 * 119.99448 * 180.27078 * 22 21 20 43 43 H 1.07997 * 119.99991 * 179.83259 * 23 22 21 44 44 H 1.07993 * 119.99965 * 180.02562 * 24 23 22 45 45 H 1.07999 * 120.00249 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5298 2.1638 1.2492 5 6 1.5299 2.1638 -1.2492 6 7 3.5049 1.4426 0.0006 7 6 4.1787 2.6099 0.0002 8 8 3.5722 3.6602 -0.0002 9 6 5.6857 2.6099 0.0003 10 6 6.1956 4.0525 0.0004 11 1 5.7476 4.5963 -0.8312 12 6 5.8177 4.7188 1.2982 13 1 5.6780 4.1249 2.1894 14 6 5.6503 6.0864 1.3478 15 7 5.9476 6.8237 0.3001 16 14 5.0081 6.8929 2.9056 17 1 4.9258 8.3619 2.7046 18 1 3.6580 6.3596 3.2187 19 1 5.9302 6.5982 4.0317 20 6 7.6954 4.0552 -0.1475 21 6 8.4894 3.5233 0.8513 22 6 9.8649 3.5218 0.7136 23 6 10.4468 4.0604 -0.4188 24 6 9.6530 4.5969 -1.4152 25 6 8.2773 4.5945 -1.2794 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.8935 3.1914 1.2495 32 1 0.4398 2.1638 1.2492 33 1 1.8932 1.6500 2.1393 34 1 1.8933 1.6499 -2.1393 35 1 0.4399 2.1637 -1.2493 36 1 1.8936 3.1913 -1.2494 37 1 3.9900 0.6026 0.0006 38 1 6.0491 2.0958 -0.8895 39 1 6.0491 2.0964 0.8904 40 1 6.3566 6.4163 -0.4794 41 1 8.0349 3.1062 1.7379 42 1 10.4850 3.1023 1.4920 43 1 11.5215 4.0616 -0.5251 44 1 10.1075 5.0173 -2.3000 45 1 7.6572 5.0136 -2.0580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354103620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:51 Heat of formation + Delta-G solvation = -52.200901 kcal Electronic energy + Delta-G solvation = -23643.321636 eV Core-core repulsion = 20431.046648 eV Total energy + Delta-G solvation = -3212.274988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11149 -39.99226 -38.00202 -36.00650 -33.83805 -33.11251 -31.61443 -30.88936 -29.88677 -28.24899 -27.03562 -25.42569 -24.44010 -23.20077 -21.84853 -20.94122 -20.25043 -18.82292 -18.01902 -17.39290 -16.82117 -16.42608 -15.76589 -15.67049 -15.64385 -15.50500 -14.99188 -14.67631 -14.55934 -14.07628 -14.05965 -13.87423 -13.58296 -13.23717 -13.16423 -12.95391 -12.86137 -12.71333 -12.64435 -12.45911 -12.17305 -12.07224 -11.96257 -11.70842 -11.58974 -11.55707 -11.49490 -10.64930 -10.48684 -10.18094 -9.88074 -9.64777 -9.26847 -8.43541 -6.09923 0.67171 0.73497 1.46545 1.56835 1.72633 1.98954 2.39467 2.61720 3.10523 3.37043 3.76903 3.98314 4.10947 4.14386 4.16401 4.28138 4.30694 4.43627 4.45525 4.49850 4.52620 4.62688 4.69230 4.78435 4.81039 4.83950 4.88685 4.97610 5.01734 5.12745 5.13929 5.14232 5.23394 5.27603 5.40772 5.43780 5.48842 5.54657 5.74001 5.82035 5.82187 5.95397 6.24811 6.31182 6.41048 6.78703 6.86382 7.64239 7.65638 8.96612 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.005219 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.681418 B = 5363.967928 C = 6573.096412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C 0.171 3.829 4 C -0.161 4.161 5 C -0.160 4.160 6 N -0.724 5.724 7 C 0.512 3.488 8 O -0.547 6.547 9 C -0.113 4.113 10 C 0.077 3.923 11 H 0.003 0.997 12 C -0.552 4.552 13 H 0.037 0.963 14 C -0.024 4.024 15 N -0.944 5.944 16 Si 1.095 2.905 17 H -0.289 1.289 18 H -0.286 1.286 19 H -0.267 1.267 20 C -0.055 4.055 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.125 4.125 25 C -0.153 4.153 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.409 0.591 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.260 0.740 41 H 0.113 0.887 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 -16.743 -1.185 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.086 3.914 4 C -0.219 4.219 5 C -0.218 4.218 6 N -0.379 5.379 7 C 0.299 3.701 8 O -0.423 6.423 9 C -0.153 4.153 10 C 0.057 3.943 11 H 0.022 0.978 12 C -0.590 4.590 13 H 0.055 0.945 14 C -0.223 4.223 15 N -0.583 5.583 16 Si 0.920 3.080 17 H -0.215 1.215 18 H -0.213 1.213 19 H -0.193 1.193 20 C -0.056 4.056 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.162 4.162 24 C -0.143 4.143 25 C -0.172 4.172 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.245 0.755 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.131 0.869 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.051 -14.533 -0.529 14.859 hybrid contribution 0.505 -1.097 -0.779 1.437 sum -2.546 -15.629 -1.308 15.889 Atomic orbital electron populations 1.21861 0.93878 1.02800 1.02383 1.21705 0.97594 0.92485 1.03388 1.20375 0.79294 0.97060 0.94711 1.22216 1.01723 1.00674 0.97321 1.22202 1.01823 1.00544 0.97199 1.46126 1.06793 1.08191 1.76788 1.20837 0.90619 0.83567 0.75099 1.90682 1.70390 1.33069 1.48159 1.21576 0.91446 0.99158 1.03114 1.17663 0.87855 0.92099 0.96652 0.97845 1.21743 1.48503 0.93927 0.94803 0.94476 1.26674 0.95438 0.95898 1.04256 1.70811 1.41774 1.39450 1.06222 0.83232 0.76484 0.75234 0.73073 1.21489 1.21252 1.19263 1.20648 0.97600 0.94421 0.92939 1.21002 0.93986 1.00955 0.98110 1.21409 0.94289 1.00024 0.98557 1.21308 1.00539 1.00180 0.94196 1.21302 0.92898 0.99963 1.00147 1.21127 0.95857 1.02088 0.98085 0.92244 0.90806 0.92408 0.90256 0.90489 0.94571 0.90217 0.92658 0.92296 0.90193 0.94570 0.75534 0.89409 0.88942 0.92959 0.86927 0.83965 0.83530 0.84705 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.21 71.98 0.66 -1.60 16 2 C -0.11 -1.97 5.10 30.60 0.16 -1.82 16 3 C 0.17 4.53 0.83 3.60 0.00 4.53 16 4 C -0.16 -4.89 8.05 71.98 0.58 -4.31 16 5 C -0.16 -4.61 8.05 71.98 0.58 -4.03 16 6 N -0.72 -21.11 5.11 -422.92 -2.16 -23.27 16 7 C 0.51 20.69 7.00 87.66 0.61 21.31 16 8 O -0.55 -28.03 11.23 -3.04 -0.03 -28.06 16 9 C -0.11 -4.46 4.95 29.85 0.15 -4.31 16 10 C 0.08 3.83 1.23 -12.28 -0.02 3.81 16 11 H 0.00 0.19 6.59 -2.39 -0.02 0.18 16 12 C -0.55 -31.11 6.35 25.60 0.16 -30.95 16 13 H 0.04 2.08 7.82 -2.91 -0.02 2.06 16 14 C -0.02 -1.46 5.45 84.65 0.46 -1.00 16 15 N -0.94 -60.92 13.56 21.44 0.29 -60.62 16 16 Si 1.09 54.80 29.91 68.60 2.05 56.86 16 17 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 18 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 C -0.06 -2.51 4.53 -19.87 -0.09 -2.60 16 21 C -0.12 -4.92 8.90 22.27 0.20 -4.73 16 22 C -0.12 -4.14 10.05 22.27 0.22 -3.92 16 23 C -0.14 -4.52 10.05 22.27 0.22 -4.30 16 24 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 25 C -0.15 -6.58 9.18 22.27 0.20 -6.38 16 26 H 0.06 0.90 6.43 -2.39 -0.02 0.88 16 27 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.06 0.90 6.43 -2.39 -0.02 0.89 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.04 1.46 6.17 -2.38 -0.01 1.45 16 32 H 0.08 2.00 6.43 -2.39 -0.02 1.99 16 33 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.08 1.92 6.43 -2.39 -0.02 1.90 16 36 H 0.04 1.38 6.17 -2.39 -0.01 1.37 16 37 H 0.41 8.86 8.47 -92.71 -0.79 8.07 16 38 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.09 3.34 7.96 -2.39 -0.02 3.32 16 40 H 0.26 16.78 6.24 -92.71 -0.58 16.20 16 41 H 0.11 4.46 7.85 -2.91 -0.02 4.44 16 42 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 44 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 45 H 0.09 4.22 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -75.98 354.06 4.86 -71.12 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.38 Total: 28.43 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 4.33 Total: -44.46 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.87 Total: -83.89 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.03 Total: -28.06 kcal Atomic # 14 Polarization: 54.80 SS G_CDS: 2.05 Total: 56.86 kcal Total: -75.98 4.86 -71.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354103620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.923 kcal (2) G-P(sol) polarization free energy of solvation -75.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds