Wall clock time and date at job start Tue Mar 31 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46922 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99954 * 2 1 3 5 5 C 1.52997 * 109.46958 * 300.00300 * 4 2 1 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 C 1.52997 * 109.47093 * 239.99772 * 2 1 3 14 14 N 1.46500 * 109.47160 * 60.00174 * 13 2 1 15 15 C 1.34775 * 120.00332 * 180.02562 * 14 13 2 16 16 O 1.21693 * 119.99858 * 359.97438 * 15 14 13 17 17 C 1.46374 * 120.00452 * 180.02562 * 15 14 13 18 18 H 1.08004 * 119.99603 * 359.97438 * 17 15 14 19 19 C 1.40048 * 120.00386 * 179.97438 * 17 15 14 20 20 N 1.30670 * 119.99844 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00161 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47266 * 89.99998 * 21 19 17 23 23 H 1.48500 * 109.46941 * 210.00024 * 21 19 17 24 24 H 1.48497 * 109.46826 * 329.99449 * 21 19 17 25 25 H 1.08992 * 109.46703 * 300.00034 * 1 2 3 26 26 H 1.08997 * 109.46778 * 60.00395 * 1 2 3 27 27 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46658 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47072 * 299.99425 * 3 2 1 30 30 H 1.08992 * 109.47002 * 60.00154 * 3 2 1 31 31 H 1.08992 * 109.47400 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.46626 * 59.99829 * 4 2 1 33 33 H 1.08995 * 109.47671 * 59.99728 * 5 4 2 34 34 H 1.09004 * 109.46984 * 299.99744 * 5 4 2 35 35 H 1.09005 * 109.47610 * 59.99944 * 6 5 4 36 36 H 1.09000 * 109.47256 * 299.99285 * 6 5 4 37 37 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 40 40 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 41 41 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 42 42 H 1.09003 * 109.47204 * 179.97438 * 13 2 1 43 43 H 1.09004 * 109.47310 * 300.00097 * 13 2 1 44 44 H 0.97006 * 120.00047 * 0.02562 * 14 13 2 45 45 H 0.96996 * 120.00118 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0395 -0.7216 3.7477 7 6 1.5376 -0.0108 4.9782 8 6 0.3295 -0.3754 5.5425 9 6 -0.1306 0.2762 6.6715 10 6 0.6177 1.2919 7.2365 11 6 1.8232 1.6601 6.6691 12 6 2.2855 1.0054 5.5428 13 6 2.0401 -0.7213 -1.2492 14 7 1.5518 -0.0307 -2.4454 15 6 1.8769 -0.4915 -3.6695 16 8 2.5765 -1.4809 -3.7811 17 6 1.3895 0.1988 -4.8647 18 1 0.7689 1.0772 -4.7656 19 6 1.7278 -0.2796 -6.1367 20 7 2.4790 -1.3421 -6.2565 21 14 1.1063 0.6018 -7.6619 22 1 2.0854 1.6427 -8.0656 23 1 0.9409 -0.3771 -8.7663 24 1 -0.2014 1.2402 -7.3663 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7209 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 0.4401 0.0000 2.4985 34 1 1.8934 1.0277 2.4985 35 1 3.1296 -0.7220 3.7480 36 1 1.6757 -1.7491 3.7475 37 1 -0.2549 -1.1693 5.1013 38 1 -1.0747 -0.0084 7.1121 39 1 0.2583 1.8007 8.1189 40 1 2.4058 2.4566 7.1080 41 1 3.2298 1.2897 5.1024 42 1 3.1301 -0.7209 -1.2494 43 1 1.6767 -1.7490 -1.2492 44 1 0.9944 0.7582 -2.3564 45 1 2.7136 -1.6733 -7.1375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356199400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:46 Heat of formation + Delta-G solvation = -49.155252 kcal Electronic energy + Delta-G solvation = -22147.137575 eV Core-core repulsion = 18934.994656 eV Total energy + Delta-G solvation = -3212.142919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.58920 -38.51114 -36.60723 -34.33578 -32.58441 -31.78927 -31.11003 -29.87512 -27.05277 -26.95514 -26.30488 -24.89804 -22.79282 -22.29476 -20.91107 -19.56714 -18.44845 -17.23212 -16.89357 -15.72763 -15.46004 -15.28655 -14.73478 -14.64762 -14.35732 -14.08836 -13.68629 -13.61310 -13.50997 -13.06829 -12.94068 -12.68833 -12.26442 -12.04534 -12.02972 -11.61448 -11.50898 -11.25972 -11.21904 -11.18752 -11.12909 -10.90580 -10.64131 -10.43568 -10.38323 -10.23278 -10.15776 -9.99650 -9.15006 -8.87620 -8.81269 -7.55179 -7.39053 -6.13975 -4.59084 1.13891 1.17130 3.16254 3.22853 3.26337 3.55792 4.13937 4.50543 4.61033 4.64289 4.74877 4.83638 4.90156 4.93491 5.03416 5.13200 5.21714 5.29194 5.34342 5.41143 5.48523 5.60663 5.72101 5.77450 5.82281 5.86236 5.86905 5.92705 5.93980 6.09895 6.14559 6.16534 6.24350 6.28327 6.30580 6.38078 6.44238 6.48148 6.54772 6.70987 6.74419 6.79090 7.47285 8.00078 8.19121 8.39022 9.07007 9.61731 10.65587 10.85256 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.043812 B = 0.002362 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.942262 B =11851.181413 C =11993.805484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 C -0.140 4.140 4 C -0.106 4.106 5 C -0.114 4.114 6 C -0.084 4.084 7 C -0.075 4.075 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.130 4.130 11 C -0.119 4.119 12 C -0.119 4.119 13 C 0.145 3.855 14 N -0.765 5.765 15 C 0.554 3.446 16 O -0.583 6.583 17 C -0.546 4.546 18 H 0.066 0.934 19 C 0.087 3.913 20 N -0.769 5.769 21 Si 0.907 3.093 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.379 0.621 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.834 5.426 23.995 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 C -0.197 4.197 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.122 4.122 7 C -0.075 4.075 8 C -0.137 4.137 9 C -0.137 4.137 10 C -0.148 4.148 11 C -0.137 4.137 12 C -0.137 4.137 13 C 0.019 3.981 14 N -0.421 5.421 15 C 0.358 3.642 16 O -0.466 6.466 17 C -0.583 4.583 18 H 0.084 0.916 19 C -0.132 4.132 20 N -0.398 5.398 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.190 1.190 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.211 0.789 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.213 4.541 23.785 24.427 hybrid contribution -0.579 0.834 -0.666 1.214 sum -3.792 5.374 23.119 24.036 Atomic orbital electron populations 1.21886 0.94629 1.01811 1.01379 1.20778 0.95890 0.95927 0.94918 1.21887 1.01001 0.95438 1.01377 1.21575 1.00708 0.99164 0.92947 1.21680 1.01143 0.99628 0.92634 1.20692 1.00972 0.98925 0.91573 1.20009 0.94681 0.96313 0.96515 1.21095 0.96009 1.00325 0.96268 1.21149 0.99737 0.96512 0.96337 1.21125 0.95396 0.98031 1.00268 1.21149 0.96452 0.99777 0.96354 1.21093 1.00040 0.96262 0.96302 1.20879 0.97763 0.95250 0.84162 1.46151 1.57776 1.32881 1.05299 1.18200 0.80219 0.84182 0.81603 1.90593 1.41598 1.28366 1.86060 1.20887 1.34089 1.13661 0.89695 0.91586 1.25706 0.93416 0.94110 1.00001 1.70025 1.27169 1.18655 1.23955 0.86396 0.79793 0.79600 0.81079 1.19790 1.20503 1.18964 0.92928 0.92312 0.92787 0.92788 0.92313 0.92928 0.91810 0.91808 0.91543 0.91537 0.90988 0.90983 0.86101 0.86251 0.86370 0.86250 0.86102 0.93651 0.93646 0.78883 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.95 37.16 0.30 -1.55 16 2 C -0.07 -1.05 0.56 -154.50 -0.09 -1.13 16 3 C -0.14 -1.85 7.95 37.16 0.30 -1.55 16 4 C -0.11 -1.24 4.27 -26.73 -0.11 -1.35 16 5 C -0.11 -1.12 4.49 -26.74 -0.12 -1.24 16 6 C -0.08 -0.75 5.34 -27.88 -0.15 -0.90 16 7 C -0.08 -0.70 5.13 -104.62 -0.54 -1.24 16 8 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 9 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 10 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 11 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 12 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 13 C 0.14 2.80 4.56 -4.04 -0.02 2.79 16 14 N -0.76 -17.27 4.95 -61.72 -0.31 -17.58 16 15 C 0.55 16.07 7.75 -12.99 -0.10 15.97 16 16 O -0.58 -19.31 15.02 5.20 0.08 -19.24 16 17 C -0.55 -15.68 9.54 -35.63 -0.34 -16.02 16 18 H 0.07 1.74 7.85 -52.48 -0.41 1.32 16 19 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 20 N -0.77 -23.47 11.83 55.55 0.66 -22.81 16 21 Si 0.91 20.42 29.56 -169.99 -5.02 15.39 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 25 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 26 H 0.06 0.83 6.86 -51.93 -0.36 0.48 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 29 H 0.06 0.83 6.86 -51.93 -0.36 0.48 16 30 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 34 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 35 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.38 7.59 6.14 -40.82 -0.25 7.34 16 45 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -34.54 362.30 -9.40 -43.94 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.34 Total: 5.83 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -2.93 Total: -11.00 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.35 Total: -40.39 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.08 Total: -19.24 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.54 -9.40 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356199400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.211 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds