Wall clock time and date at job start Tue Mar 31 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46922 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99954 * 2 1 3 5 5 C 1.52997 * 109.46958 * 300.00300 * 4 2 1 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 C 1.52997 * 109.47093 * 239.99772 * 2 1 3 14 14 N 1.46500 * 109.47160 * 60.00174 * 13 2 1 15 15 C 1.34775 * 120.00332 * 180.02562 * 14 13 2 16 16 O 1.21693 * 119.99858 * 359.97438 * 15 14 13 17 17 C 1.46374 * 120.00452 * 180.02562 * 15 14 13 18 18 H 1.08004 * 119.99603 * 359.97438 * 17 15 14 19 19 C 1.40048 * 120.00386 * 179.97438 * 17 15 14 20 20 N 1.30670 * 119.99844 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00161 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47266 * 89.99998 * 21 19 17 23 23 H 1.48500 * 109.46941 * 210.00024 * 21 19 17 24 24 H 1.48497 * 109.46826 * 329.99449 * 21 19 17 25 25 H 1.08992 * 109.46703 * 300.00034 * 1 2 3 26 26 H 1.08997 * 109.46778 * 60.00395 * 1 2 3 27 27 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46658 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47072 * 299.99425 * 3 2 1 30 30 H 1.08992 * 109.47002 * 60.00154 * 3 2 1 31 31 H 1.08992 * 109.47400 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.46626 * 59.99829 * 4 2 1 33 33 H 1.08995 * 109.47671 * 59.99728 * 5 4 2 34 34 H 1.09004 * 109.46984 * 299.99744 * 5 4 2 35 35 H 1.09005 * 109.47610 * 59.99944 * 6 5 4 36 36 H 1.09000 * 109.47256 * 299.99285 * 6 5 4 37 37 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 40 40 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 41 41 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 42 42 H 1.09003 * 109.47204 * 179.97438 * 13 2 1 43 43 H 1.09004 * 109.47310 * 300.00097 * 13 2 1 44 44 H 0.97006 * 120.00047 * 0.02562 * 14 13 2 45 45 H 0.96996 * 120.00118 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0395 -0.7216 3.7477 7 6 1.5376 -0.0108 4.9782 8 6 0.3295 -0.3754 5.5425 9 6 -0.1306 0.2762 6.6715 10 6 0.6177 1.2919 7.2365 11 6 1.8232 1.6601 6.6691 12 6 2.2855 1.0054 5.5428 13 6 2.0401 -0.7213 -1.2492 14 7 1.5518 -0.0307 -2.4454 15 6 1.8769 -0.4915 -3.6695 16 8 2.5765 -1.4809 -3.7811 17 6 1.3895 0.1988 -4.8647 18 1 0.7689 1.0772 -4.7656 19 6 1.7278 -0.2796 -6.1367 20 7 2.4790 -1.3421 -6.2565 21 14 1.1063 0.6018 -7.6619 22 1 2.0854 1.6427 -8.0656 23 1 0.9409 -0.3771 -8.7663 24 1 -0.2014 1.2402 -7.3663 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7209 1.2495 32 1 1.6767 -1.7489 1.2492 33 1 0.4401 0.0000 2.4985 34 1 1.8934 1.0277 2.4985 35 1 3.1296 -0.7220 3.7480 36 1 1.6757 -1.7491 3.7475 37 1 -0.2549 -1.1693 5.1013 38 1 -1.0747 -0.0084 7.1121 39 1 0.2583 1.8007 8.1189 40 1 2.4058 2.4566 7.1080 41 1 3.2298 1.2897 5.1024 42 1 3.1301 -0.7209 -1.2494 43 1 1.6767 -1.7490 -1.2492 44 1 0.9944 0.7582 -2.3564 45 1 2.7136 -1.6733 -7.1375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356199400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:46 Heat of formation + Delta-G solvation = -69.221540 kcal Electronic energy + Delta-G solvation = -22148.007715 eV Core-core repulsion = 18934.994656 eV Total energy + Delta-G solvation = -3213.013059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34995 -39.88666 -38.42444 -35.44815 -34.61938 -33.50551 -31.71092 -30.83271 -28.88883 -28.15018 -27.39193 -26.39274 -23.39990 -23.31380 -21.73641 -21.46491 -19.85413 -18.98953 -17.61251 -17.42760 -16.47295 -16.29870 -16.14490 -15.87745 -15.87691 -15.26714 -15.08581 -14.65891 -14.30252 -14.19160 -14.14825 -14.05066 -13.66889 -13.22698 -13.11902 -12.83638 -12.82843 -12.65254 -12.60205 -12.49883 -12.46699 -12.05320 -11.92383 -11.92033 -11.66699 -11.39161 -11.21601 -11.20650 -10.93183 -9.86504 -9.76969 -9.51785 -9.42976 -8.28645 -6.85048 0.51037 0.55117 1.39694 1.41653 1.56868 2.25016 2.47985 2.92500 3.18239 3.62608 3.73838 3.90815 3.92120 4.01628 4.03285 4.22082 4.28615 4.34201 4.40534 4.60242 4.62210 4.70078 4.72717 4.77425 4.80998 4.90205 4.92605 4.92747 5.01785 5.09537 5.17895 5.19647 5.22726 5.26454 5.29671 5.31804 5.40362 5.56917 5.58815 5.63955 5.67996 5.81589 5.88838 6.19098 6.25792 6.31479 6.86972 7.57796 8.50831 8.68616 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.043812 B = 0.002362 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.942262 B =11851.181413 C =11993.805484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.101 4.101 5 C -0.102 4.102 6 C -0.080 4.080 7 C -0.088 4.088 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.137 4.137 11 C -0.128 4.128 12 C -0.132 4.132 13 C 0.146 3.854 14 N -0.749 5.749 15 C 0.536 3.464 16 O -0.636 6.636 17 C -0.574 4.574 18 H 0.087 0.913 19 C 0.026 3.974 20 N -0.823 5.823 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.248 1.248 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.393 0.607 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 7.440 24.928 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.117 4.117 7 C -0.088 4.088 8 C -0.150 4.150 9 C -0.146 4.146 10 C -0.155 4.155 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.021 3.979 14 N -0.404 5.404 15 C 0.340 3.660 16 O -0.524 6.524 17 C -0.610 4.610 18 H 0.105 0.895 19 C -0.189 4.189 20 N -0.453 5.453 21 Si 0.818 3.182 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.172 1.172 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.228 0.772 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.664 6.592 24.775 26.058 hybrid contribution -0.118 0.185 -0.856 0.883 sum -4.782 6.776 23.920 25.317 Atomic orbital electron populations 1.21871 0.93596 1.01769 1.02189 1.20702 0.96586 0.96126 0.92976 1.21872 1.00705 0.94658 1.02192 1.21531 1.00622 0.99084 0.92711 1.21566 1.01160 0.99454 0.91780 1.20626 1.01087 0.98906 0.91108 1.20086 0.95109 0.96769 0.96842 1.21299 0.96165 1.00800 0.96762 1.21434 1.00510 0.96460 0.96188 1.21443 0.95284 0.97956 1.00824 1.21435 0.96816 1.00136 0.96203 1.21298 1.00485 0.96448 0.96794 1.21008 0.96586 0.94878 0.85451 1.45819 1.56927 1.32958 1.04731 1.18640 0.79907 0.83798 0.83696 1.90545 1.43982 1.30623 1.87279 1.21429 1.34685 1.14492 0.90415 0.89532 1.27014 0.92980 0.94690 1.04187 1.70198 1.28756 1.20851 1.25480 0.85001 0.79746 0.78136 0.75275 1.18575 1.19798 1.17162 0.90134 0.93408 0.93323 0.93323 0.93402 0.90134 0.91999 0.91999 0.91250 0.91244 0.90785 0.90780 0.85395 0.84592 0.84467 0.84591 0.85396 0.95668 0.95663 0.77175 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 7.95 71.98 0.57 -2.86 16 2 C -0.06 -1.74 0.56 -52.18 -0.03 -1.76 16 3 C -0.14 -3.43 7.95 71.98 0.57 -2.86 16 4 C -0.10 -2.28 4.27 30.59 0.13 -2.15 16 5 C -0.10 -1.81 4.49 30.59 0.14 -1.67 16 6 C -0.08 -1.31 5.34 29.85 0.16 -1.15 16 7 C -0.09 -1.52 5.13 -19.86 -0.10 -1.62 16 8 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 9 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 10 C -0.14 -1.94 10.05 22.27 0.22 -1.72 16 11 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 12 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 13 C 0.15 5.83 4.56 86.38 0.39 6.23 16 14 N -0.75 -34.63 4.95 -467.40 -2.32 -36.94 16 15 C 0.54 32.05 7.75 86.36 0.67 32.72 16 16 O -0.64 -44.17 15.02 -4.33 -0.06 -44.23 16 17 C -0.57 -33.23 9.54 24.83 0.24 -32.99 16 18 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 19 C 0.03 1.48 5.50 85.30 0.47 1.95 16 20 N -0.82 -51.54 11.83 21.84 0.26 -51.29 16 21 Si 1.00 41.59 29.56 68.60 2.03 43.61 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 25 H 0.08 1.59 6.43 -2.39 -0.02 1.57 16 26 H 0.05 1.29 6.86 -2.39 -0.02 1.28 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.05 1.29 6.86 -2.39 -0.02 1.28 16 30 H 0.08 1.59 6.43 -2.39 -0.02 1.57 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.21 6.43 -2.39 -0.02 1.19 16 34 H 0.07 1.21 6.43 -2.38 -0.02 1.19 16 35 H 0.07 1.17 8.09 -2.38 -0.02 1.15 16 36 H 0.07 1.17 8.09 -2.39 -0.02 1.16 16 37 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.39 15.78 6.14 -92.70 -0.57 15.21 16 45 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 Total: -1.00 -77.38 362.30 4.61 -72.77 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.39 Total: 31.24 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.31 Total: -15.16 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -2.06 Total: -88.23 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.06 Total: -44.23 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -77.38 4.61 -72.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356199400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.545 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds