Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99339 * 179.76368 * 4 3 2 6 6 C 1.38235 * 120.00243 * 0.48625 * 5 4 3 7 7 C 1.50696 * 119.99815 * 179.76576 * 6 5 4 8 8 H 1.09001 * 109.46749 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47192 * 300.02200 * 7 6 5 10 10 C 1.50701 * 109.47025 * 60.02250 * 7 6 5 11 11 O 1.21281 * 120.00168 * 359.97438 * 10 7 6 12 12 N 1.34779 * 120.00218 * 179.97438 * 10 7 6 13 13 C 1.46495 * 120.00184 * 180.02562 * 12 10 7 14 14 H 1.09001 * 109.46965 * 324.99384 * 13 12 10 15 15 C 1.50703 * 109.46899 * 204.99937 * 13 12 10 16 16 H 1.08003 * 120.00117 * 359.97438 * 15 13 12 17 17 C 1.37883 * 119.99994 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99714 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 119.99984 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47391 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47192 * 119.99998 * 19 17 15 22 22 H 1.48503 * 109.47186 * 239.99751 * 19 17 15 23 23 C 1.52993 * 109.47655 * 84.99574 * 13 12 10 24 24 C 1.52996 * 109.47197 * 295.00218 * 23 13 12 25 25 C 1.38230 * 119.99908 * 359.78566 * 6 5 4 26 26 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.99237 * 180.24848 * 5 4 3 34 34 H 1.08996 * 109.47025 * 60.00364 * 9 7 6 35 35 H 1.09001 * 109.46651 * 179.97438 * 9 7 6 36 36 H 1.08994 * 109.47033 * 299.99774 * 9 7 6 37 37 H 0.97003 * 119.99481 * 359.97438 * 12 10 7 38 38 H 0.96995 * 119.99399 * 180.02562 * 18 17 15 39 39 H 1.09010 * 109.47308 * 54.99913 * 23 13 12 40 40 H 1.09000 * 109.47387 * 175.00058 * 23 13 12 41 41 H 1.09006 * 109.47358 * 179.97438 * 24 23 13 42 42 H 1.09000 * 109.47196 * 299.99749 * 24 23 13 43 43 H 1.08995 * 109.47365 * 60.00046 * 24 23 13 44 44 H 1.07997 * 119.99935 * 179.97438 * 25 6 5 45 45 H 1.07999 * 119.99681 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4481 -0.0001 8 1 3.5777 5.7906 1.0275 9 6 4.8043 5.5125 -0.7214 10 6 2.4639 6.3318 -0.7106 11 8 1.4487 5.8548 -1.1719 12 7 2.7041 7.6523 -0.8334 13 6 1.7389 8.5114 -1.5235 14 1 1.2838 7.9591 -2.3457 15 6 2.4459 9.7270 -2.0655 16 1 3.5080 9.8477 -1.9109 17 6 1.7369 10.6850 -2.7587 18 7 0.4437 10.5378 -2.9474 19 14 2.6132 12.1920 -3.4298 20 1 4.0560 12.1199 -3.0858 21 1 2.4585 12.2381 -4.9060 22 1 2.0217 13.4159 -2.8317 23 6 0.6519 8.9498 -0.5402 24 6 -0.1474 7.7271 -0.0852 25 6 2.7238 3.3757 1.1971 26 6 2.2627 2.0726 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0927 1.5597 -2.1324 33 1 2.9047 3.8844 -2.1326 34 1 4.6832 5.1700 -1.7490 35 1 5.1673 6.5403 -0.7218 36 1 5.5223 4.8734 -0.2075 37 1 3.5159 8.0339 -0.4641 38 1 -0.0550 11.2116 -3.4353 39 1 1.1146 9.4240 0.3254 40 1 -0.0159 9.6590 -1.0293 41 1 -0.9217 8.0394 0.6157 42 1 -0.6102 7.2529 -0.9507 43 1 0.5203 7.0180 0.4039 44 1 2.9039 3.8848 2.1323 45 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358080898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -41.385922 kcal Electronic energy + Delta-G solvation = -23208.238498 eV Core-core repulsion = 19996.432482 eV Total energy + Delta-G solvation = -3211.806016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94347 -38.56939 -35.40316 -34.55220 -32.82928 -32.07335 -30.75345 -30.65280 -28.42360 -26.91407 -24.74482 -23.40071 -22.62986 -22.50879 -20.80518 -19.75611 -19.14773 -17.13558 -16.28563 -15.76098 -15.39954 -15.27414 -14.85129 -14.50428 -14.16137 -13.72408 -13.66135 -13.39432 -13.10638 -13.04986 -12.75964 -12.65793 -12.27109 -11.92747 -11.67462 -11.62001 -11.36446 -11.34204 -11.22986 -11.07189 -10.95049 -10.82868 -10.66122 -10.63626 -10.28854 -10.14016 -9.60284 -9.02619 -8.90200 -8.65092 -8.48833 -8.31003 -7.76272 -6.11549 -4.20743 1.50190 1.63039 3.23373 3.31412 3.33771 3.47432 3.84913 4.23693 4.43428 4.71422 4.83427 4.90009 5.10323 5.16399 5.19730 5.29283 5.33926 5.39300 5.48822 5.59142 5.64664 5.67867 5.77965 5.87343 5.91484 5.99927 6.10647 6.20659 6.24587 6.29533 6.41757 6.48748 6.60057 6.69410 6.75881 6.85977 7.06797 7.19155 7.23488 7.40172 7.50650 7.64178 7.76340 7.92672 8.20268 8.72048 8.80523 9.20116 9.47169 10.93746 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.003555 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.461533 B = 7873.837273 C = 8237.945738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.090 4.090 4 C -0.121 4.121 5 C -0.077 4.077 6 C -0.059 4.059 7 C -0.078 4.078 8 H 0.095 0.905 9 C -0.138 4.138 10 C 0.505 3.495 11 O -0.540 6.540 12 N -0.708 5.708 13 C 0.271 3.729 14 H 0.048 0.952 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.127 4.127 24 C -0.136 4.136 25 C -0.112 4.112 26 C -0.124 4.124 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.387 0.613 38 H 0.263 0.737 39 H 0.030 0.970 40 H 0.098 0.902 41 H 0.021 0.979 42 H 0.049 0.951 43 H 0.038 0.962 44 H 0.118 0.882 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 -15.671 7.423 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.139 4.139 5 C -0.095 4.095 6 C -0.059 4.059 7 C -0.100 4.100 8 H 0.113 0.887 9 C -0.195 4.195 10 C 0.289 3.711 11 O -0.418 6.418 12 N -0.356 5.356 13 C 0.169 3.831 14 H 0.066 0.934 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.166 4.166 24 C -0.193 4.193 25 C -0.131 4.131 26 C -0.142 4.142 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.219 0.781 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.116 0.884 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.136 0.864 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.950 -15.888 6.979 18.046 hybrid contribution 0.705 1.189 -0.128 1.388 sum 5.656 -14.699 6.851 17.175 Atomic orbital electron populations 1.21752 0.94858 1.01322 1.02522 1.20502 0.96141 0.92926 1.02344 1.19814 0.99720 0.96127 0.93318 1.20949 1.00643 0.95024 0.97270 1.20912 0.97005 0.93750 0.97826 1.19345 0.99205 0.94006 0.93381 1.20377 0.95872 0.92365 1.01343 0.88656 1.21757 0.94470 1.02571 1.00737 1.20158 0.86920 0.83250 0.80737 1.90686 1.27702 1.74406 1.48962 1.46475 1.24714 1.07189 1.57258 1.18753 0.85800 0.88165 0.90354 0.93405 1.21279 0.94972 1.05101 1.35728 0.92099 1.24893 0.94877 0.98242 0.95727 1.69912 1.06509 1.35060 1.40464 0.86421 0.79670 0.82452 0.78712 1.19757 1.20920 1.20905 1.21931 0.99231 0.97309 0.98140 1.21828 0.98784 0.98922 0.99812 1.20954 1.00025 0.94875 0.97201 1.20852 1.01148 0.94968 0.97209 0.92697 0.92390 0.92560 0.91413 0.91329 0.86513 0.86227 0.91962 0.91545 0.91951 0.78100 0.92663 0.95139 0.88382 0.95997 0.93210 0.94262 0.86437 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.08 -0.78 6.07 -27.88 -0.17 -0.95 16 3 C -0.09 -1.11 5.13 -104.62 -0.54 -1.65 16 4 C -0.12 -1.64 9.70 -39.58 -0.38 -2.03 16 5 C -0.08 -1.18 7.93 -39.58 -0.31 -1.49 16 6 C -0.06 -0.88 4.40 -104.63 -0.46 -1.34 16 7 C -0.08 -1.14 2.90 -92.93 -0.27 -1.41 16 8 H 0.10 1.22 7.88 -51.93 -0.41 0.81 16 9 C -0.14 -1.71 8.90 37.16 0.33 -1.38 16 10 C 0.51 9.79 5.59 -10.98 -0.06 9.73 16 11 O -0.54 -12.41 12.25 5.56 0.07 -12.34 16 12 N -0.71 -14.41 4.91 -54.94 -0.27 -14.68 16 13 C 0.27 6.77 2.24 -69.09 -0.15 6.61 16 14 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 15 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 18 N -0.88 -24.71 11.30 55.43 0.63 -24.08 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.13 -3.11 5.45 -26.74 -0.15 -3.26 16 24 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 25 C -0.11 -1.50 9.67 -39.59 -0.38 -1.89 16 26 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.12 1.91 7.52 -52.48 -0.39 1.52 16 34 H 0.06 0.82 7.39 -51.93 -0.38 0.43 16 35 H 0.07 0.78 7.57 -51.93 -0.39 0.38 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.39 6.86 7.96 -40.82 -0.32 6.53 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 43 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 44 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -30.04 359.89 -9.30 -39.35 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.49 Total: 8.16 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -2.64 Total: -17.35 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.36 Total: -38.76 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.04 -9.30 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.040 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds