Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99339 * 179.76368 * 4 3 2 6 6 C 1.38235 * 120.00243 * 0.48625 * 5 4 3 7 7 C 1.50696 * 119.99815 * 179.76576 * 6 5 4 8 8 H 1.09001 * 109.46749 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47192 * 300.02200 * 7 6 5 10 10 C 1.50701 * 109.47025 * 60.02250 * 7 6 5 11 11 O 1.21281 * 120.00168 * 359.97438 * 10 7 6 12 12 N 1.34779 * 120.00218 * 179.97438 * 10 7 6 13 13 C 1.46495 * 120.00184 * 180.02562 * 12 10 7 14 14 H 1.09001 * 109.46965 * 324.99384 * 13 12 10 15 15 C 1.50703 * 109.46899 * 204.99937 * 13 12 10 16 16 H 1.08003 * 120.00117 * 359.97438 * 15 13 12 17 17 C 1.37883 * 119.99994 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99714 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 119.99984 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47391 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47192 * 119.99998 * 19 17 15 22 22 H 1.48503 * 109.47186 * 239.99751 * 19 17 15 23 23 C 1.52993 * 109.47655 * 84.99574 * 13 12 10 24 24 C 1.52996 * 109.47197 * 295.00218 * 23 13 12 25 25 C 1.38230 * 119.99908 * 359.78566 * 6 5 4 26 26 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.99237 * 180.24848 * 5 4 3 34 34 H 1.08996 * 109.47025 * 60.00364 * 9 7 6 35 35 H 1.09001 * 109.46651 * 179.97438 * 9 7 6 36 36 H 1.08994 * 109.47033 * 299.99774 * 9 7 6 37 37 H 0.97003 * 119.99481 * 359.97438 * 12 10 7 38 38 H 0.96995 * 119.99399 * 180.02562 * 18 17 15 39 39 H 1.09010 * 109.47308 * 54.99913 * 23 13 12 40 40 H 1.09000 * 109.47387 * 175.00058 * 23 13 12 41 41 H 1.09006 * 109.47358 * 179.97438 * 24 23 13 42 42 H 1.09000 * 109.47196 * 299.99749 * 24 23 13 43 43 H 1.08995 * 109.47365 * 60.00046 * 24 23 13 44 44 H 1.07997 * 119.99935 * 179.97438 * 25 6 5 45 45 H 1.07999 * 119.99681 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4481 -0.0001 8 1 3.5777 5.7906 1.0275 9 6 4.8043 5.5125 -0.7214 10 6 2.4639 6.3318 -0.7106 11 8 1.4487 5.8548 -1.1719 12 7 2.7041 7.6523 -0.8334 13 6 1.7389 8.5114 -1.5235 14 1 1.2838 7.9591 -2.3457 15 6 2.4459 9.7270 -2.0655 16 1 3.5080 9.8477 -1.9109 17 6 1.7369 10.6850 -2.7587 18 7 0.4437 10.5378 -2.9474 19 14 2.6132 12.1920 -3.4298 20 1 4.0560 12.1199 -3.0858 21 1 2.4585 12.2381 -4.9060 22 1 2.0217 13.4159 -2.8317 23 6 0.6519 8.9498 -0.5402 24 6 -0.1474 7.7271 -0.0852 25 6 2.7238 3.3757 1.1971 26 6 2.2627 2.0726 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0927 1.5597 -2.1324 33 1 2.9047 3.8844 -2.1326 34 1 4.6832 5.1700 -1.7490 35 1 5.1673 6.5403 -0.7218 36 1 5.5223 4.8734 -0.2075 37 1 3.5159 8.0339 -0.4641 38 1 -0.0550 11.2116 -3.4353 39 1 1.1146 9.4240 0.3254 40 1 -0.0159 9.6590 -1.0293 41 1 -0.9217 8.0394 0.6157 42 1 -0.6102 7.2529 -0.9507 43 1 0.5203 7.0180 0.4039 44 1 2.9039 3.8848 2.1323 45 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358080898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -57.260396 kcal Electronic energy + Delta-G solvation = -23208.926867 eV Core-core repulsion = 19996.432482 eV Total energy + Delta-G solvation = -3212.494385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25125 -39.88649 -37.04389 -35.85028 -34.36909 -33.59018 -32.37404 -31.76653 -29.49436 -28.77649 -25.87746 -25.05506 -23.89859 -23.60946 -22.10638 -21.32175 -20.73841 -18.84368 -17.51276 -17.37793 -16.99401 -16.48106 -16.24490 -15.94087 -15.62415 -14.93161 -14.76240 -14.59666 -14.51124 -14.13943 -14.09697 -13.90862 -13.61020 -13.45051 -13.21266 -13.05757 -12.86961 -12.73627 -12.65579 -12.48264 -12.29037 -12.13742 -12.04025 -11.97663 -11.62242 -11.60275 -11.56654 -11.02901 -10.58451 -10.41606 -9.72804 -9.55874 -9.35485 -8.15615 -6.32723 0.46546 0.59063 1.43388 1.44769 1.56371 1.93910 2.36901 2.64217 3.01933 3.14098 3.66651 3.88311 3.97890 4.10498 4.17442 4.26890 4.34321 4.44740 4.48511 4.54028 4.56652 4.61648 4.71964 4.75000 4.76554 4.87453 4.94428 5.06933 5.07559 5.08635 5.19705 5.23846 5.26967 5.29051 5.39841 5.44478 5.56995 5.58034 5.66600 5.77847 5.78260 5.81533 5.96084 6.18360 6.19430 6.76603 7.06396 7.35095 7.66535 8.89833 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.003555 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.461533 B = 7873.837273 C = 8237.945738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.099 4.099 6 C -0.079 4.079 7 C -0.066 4.066 8 H 0.123 0.877 9 C -0.133 4.133 10 C 0.501 3.499 11 O -0.580 6.580 12 N -0.705 5.705 13 C 0.280 3.720 14 H -0.005 1.005 15 C -0.545 4.545 16 H 0.072 0.928 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.969 3.031 20 H -0.259 1.259 21 H -0.285 1.285 22 H -0.279 1.279 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.126 4.126 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.402 0.598 38 H 0.264 0.736 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.022 0.978 43 H 0.044 0.956 44 H 0.140 0.860 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -16.447 9.457 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.153 4.153 5 C -0.118 4.118 6 C -0.079 4.079 7 C -0.087 4.087 8 H 0.141 0.859 9 C -0.191 4.191 10 C 0.288 3.712 11 O -0.460 6.460 12 N -0.355 5.355 13 C 0.177 3.823 14 H 0.012 0.988 15 C -0.583 4.583 16 H 0.090 0.910 17 C -0.186 4.186 18 N -0.554 5.554 19 Si 0.794 3.206 20 H -0.183 1.183 21 H -0.212 1.212 22 H -0.205 1.205 23 C -0.159 4.159 24 C -0.178 4.178 25 C -0.135 4.135 26 C -0.144 4.144 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.237 0.763 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.158 0.842 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.614 -16.676 9.034 20.086 hybrid contribution 0.154 1.333 -0.774 1.549 sum 6.768 -15.344 8.260 18.694 Atomic orbital electron populations 1.21747 0.94797 1.02352 1.01487 1.20562 0.96036 0.91270 1.03803 1.20182 0.98616 0.97480 0.92820 1.21152 1.00855 0.94691 0.98568 1.20910 0.98666 0.94742 0.97459 1.19458 1.00433 0.94166 0.93875 1.20346 0.95077 0.91171 1.02088 0.85942 1.21758 0.93756 1.03633 0.99933 1.21043 0.87211 0.82992 0.79937 1.90670 1.29850 1.74999 1.50508 1.46240 1.24572 1.07464 1.57176 1.18304 0.86727 0.87857 0.89454 0.98754 1.21622 0.95558 1.05370 1.35754 0.91016 1.25780 0.95495 1.01318 0.96007 1.70066 1.08093 1.36095 1.41188 0.85339 0.79098 0.78573 0.77573 1.18326 1.21157 1.20505 1.21780 0.98836 0.97321 0.98003 1.21654 0.99054 0.98039 0.99080 1.21260 0.99428 0.95449 0.97364 1.21239 1.00064 0.94775 0.98308 0.90666 0.94007 0.93018 0.89414 0.90447 0.85694 0.88403 0.93522 0.90735 0.89289 0.76311 0.92705 0.94016 0.91185 0.93783 0.95902 0.93724 0.84176 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.08 -1.33 6.07 29.85 0.18 -1.15 16 3 C -0.09 -2.11 5.13 -19.86 -0.10 -2.21 16 4 C -0.13 -3.68 9.70 22.27 0.22 -3.46 16 5 C -0.10 -3.13 7.93 22.27 0.18 -2.96 16 6 C -0.08 -2.30 4.40 -19.87 -0.09 -2.38 16 7 C -0.07 -1.84 2.90 -12.29 -0.04 -1.88 16 8 H 0.12 2.77 7.88 -2.39 -0.02 2.76 16 9 C -0.13 -3.11 8.90 71.98 0.64 -2.47 16 10 C 0.50 19.63 5.59 87.66 0.49 20.12 16 11 O -0.58 -27.75 12.25 -3.03 -0.04 -27.78 16 12 N -0.71 -28.81 4.91 -446.11 -2.19 -31.01 16 13 C 0.28 14.41 2.24 44.24 0.10 14.51 16 14 H -0.01 -0.34 7.58 -2.39 -0.02 -0.35 16 15 C -0.54 -28.78 8.73 25.60 0.22 -28.56 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 17 C 0.01 0.75 5.29 84.66 0.45 1.20 16 18 N -0.92 -52.81 11.30 21.45 0.24 -52.57 16 19 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 24 C -0.12 -5.59 8.51 71.98 0.61 -4.98 16 25 C -0.12 -2.87 9.67 22.27 0.22 -2.66 16 26 C -0.13 -2.80 9.70 22.27 0.22 -2.59 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 32 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 33 H 0.10 3.38 7.52 -2.91 -0.02 3.36 16 34 H 0.05 1.23 7.39 -2.39 -0.02 1.21 16 35 H 0.07 1.60 7.57 -2.39 -0.02 1.58 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.40 13.84 7.96 -92.71 -0.74 13.10 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.07 3.92 5.95 -2.39 -0.01 3.90 16 41 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.02 1.13 7.85 -2.39 -0.02 1.12 16 43 H 0.04 1.98 5.65 -2.39 -0.01 1.97 16 44 H 0.14 2.71 7.95 -2.91 -0.02 2.69 16 45 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -67.50 359.89 4.44 -63.06 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.22 Total: 31.20 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 4.17 Total: -27.09 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.95 Total: -83.57 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.04 Total: -27.78 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -67.50 4.44 -63.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.802 kcal (2) G-P(sol) polarization free energy of solvation -67.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds