Wall clock time and date at job start Tue Mar 31 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.50703 * 109.46981 * 299.97986 * 7 6 5 11 11 O 1.21279 * 120.00250 * 359.97438 * 10 7 6 12 12 N 1.34780 * 119.99988 * 179.97438 * 10 7 6 13 13 C 1.46497 * 120.00251 * 179.97438 * 12 10 7 14 14 H 1.09003 * 109.46808 * 35.00054 * 13 12 10 15 15 C 1.50695 * 109.47351 * 155.00093 * 13 12 10 16 16 H 1.08002 * 120.00113 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00291 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99889 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00149 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47045 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47123 * 119.99768 * 19 17 15 22 22 H 1.48499 * 109.47172 * 240.00091 * 19 17 15 23 23 C 1.53001 * 109.47243 * 275.00025 * 13 12 10 24 24 C 1.53008 * 109.46999 * 64.99991 * 23 13 12 25 25 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 26 26 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 34 34 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 35 35 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 36 36 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 37 37 H 0.97002 * 119.99972 * 0.02562 * 12 10 7 38 38 H 0.96993 * 119.99723 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.47386 * 184.99635 * 23 13 12 40 40 H 1.09001 * 109.47298 * 305.00069 * 23 13 12 41 41 H 1.08995 * 109.46989 * 179.97438 * 24 23 13 42 42 H 1.08999 * 109.46761 * 300.00027 * 24 23 13 43 43 H 1.09001 * 109.47032 * 59.99915 * 24 23 13 44 44 H 1.08002 * 120.00166 * 179.97438 * 25 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.7834 5.5127 -0.7096 11 8 5.2746 4.5038 -1.1696 12 7 5.4252 6.6915 -0.8331 13 6 6.7163 6.7539 -1.5224 14 1 6.7246 6.0374 -2.3438 15 6 6.9292 8.1433 -2.0655 16 1 6.1777 8.9038 -1.9129 17 6 8.0830 8.4435 -2.7581 18 7 8.9980 7.5174 -2.9444 19 14 8.3465 10.1657 -3.4320 20 1 7.1779 11.0155 -3.0894 21 1 9.5743 10.7489 -2.8337 22 1 8.4973 10.1020 -4.9079 23 6 7.8370 6.4139 -0.5378 24 6 7.6916 4.9607 -0.0815 25 6 2.7234 3.3758 1.1971 26 6 2.2627 2.0725 1.1971 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0926 1.5598 -2.1325 33 1 2.9045 3.8845 -2.1325 34 1 1.4869 6.2984 -0.2090 35 1 2.8103 7.3727 -0.7227 36 1 2.3273 6.0019 -1.7499 37 1 5.0325 7.4984 -0.4649 38 1 9.8098 7.7287 -3.4314 39 1 8.8024 6.5464 -1.0262 40 1 7.7737 7.0744 0.3270 41 1 8.4902 4.7184 0.6196 42 1 6.7262 4.8283 0.4070 43 1 7.7550 4.3003 -0.9463 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358080903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:31 Heat of formation + Delta-G solvation = -41.366367 kcal Electronic energy + Delta-G solvation = -23157.846597 eV Core-core repulsion = 19946.041429 eV Total energy + Delta-G solvation = -3211.805168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94409 -38.57116 -35.40718 -34.55788 -32.84033 -32.07816 -30.75343 -30.65396 -28.43727 -26.91403 -24.75962 -23.40652 -22.63318 -22.50930 -20.81211 -19.75696 -19.14765 -17.13724 -16.28794 -15.77277 -15.40442 -15.25324 -14.86075 -14.50659 -14.13698 -13.75965 -13.72597 -13.38718 -13.27402 -12.97809 -12.68228 -12.48307 -12.43338 -11.92339 -11.77058 -11.60567 -11.37917 -11.35223 -11.22956 -11.08806 -10.95030 -10.82887 -10.64866 -10.63742 -10.28829 -10.14049 -9.60191 -9.02594 -8.90454 -8.65002 -8.48853 -8.31121 -7.76229 -6.11503 -4.20714 1.50196 1.63047 3.23381 3.31390 3.33750 3.47442 3.84933 4.23626 4.43339 4.70427 4.82372 4.88807 5.09111 5.15425 5.19756 5.25302 5.33710 5.38891 5.46458 5.58781 5.63651 5.65876 5.76041 5.87038 5.89816 5.99274 6.03540 6.20378 6.24442 6.29469 6.41928 6.48943 6.60037 6.69498 6.75851 6.85948 7.06885 7.19133 7.23605 7.40251 7.50695 7.64244 7.76421 7.92754 8.20354 8.72091 8.80566 9.20138 9.47213 10.93789 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.003410 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.137605 B = 8208.059015 C = 8451.421386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.120 4.120 5 C -0.077 4.077 6 C -0.059 4.059 7 C -0.078 4.078 8 H 0.095 0.905 9 C -0.138 4.138 10 C 0.505 3.495 11 O -0.540 6.540 12 N -0.709 5.709 13 C 0.271 3.729 14 H 0.048 0.952 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.127 4.127 24 C -0.136 4.136 25 C -0.113 4.113 26 C -0.123 4.123 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.387 0.613 38 H 0.263 0.737 39 H 0.098 0.902 40 H 0.030 0.970 41 H 0.021 0.979 42 H 0.038 0.962 43 H 0.049 0.951 44 H 0.118 0.882 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 -8.234 7.417 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.138 4.138 5 C -0.095 4.095 6 C -0.059 4.059 7 C -0.100 4.100 8 H 0.113 0.887 9 C -0.195 4.195 10 C 0.289 3.711 11 O -0.418 6.418 12 N -0.356 5.356 13 C 0.169 3.831 14 H 0.066 0.934 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.166 4.166 24 C -0.193 4.193 25 C -0.131 4.131 26 C -0.142 4.142 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.219 0.781 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.136 0.864 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.638 -8.976 6.974 18.533 hybrid contribution 0.200 1.365 -0.130 1.385 sum -14.438 -7.611 6.844 17.698 Atomic orbital electron populations 1.21741 0.94997 1.01359 1.02155 1.20512 0.95922 0.93046 1.02607 1.19801 0.99897 0.95960 0.93316 1.20946 1.00681 0.94937 0.97275 1.20914 0.96367 0.94416 0.97826 1.19348 0.98519 0.94669 0.93379 1.20379 0.94606 0.93626 1.01346 0.88652 1.21759 0.98013 0.99030 1.00730 1.20158 0.85734 0.84448 0.80725 1.90686 1.67602 1.34479 1.48990 1.46475 1.23642 1.08208 1.57312 1.18755 0.76866 0.97092 0.90362 0.93405 1.21274 1.04237 0.95828 1.35728 0.92102 1.24892 0.95679 0.97437 0.95728 1.69908 1.08735 1.32782 1.40527 0.86423 0.78143 0.83978 0.78721 1.19758 1.20907 1.20915 1.21933 1.03767 0.92775 0.98132 1.21829 0.98664 0.99039 0.99816 1.20955 1.00022 0.94897 0.97202 1.20853 1.01254 0.94836 0.97208 0.92666 0.92584 0.92685 0.91313 0.91216 0.86512 0.86229 0.91958 0.91542 0.91962 0.78098 0.92658 0.88387 0.95136 0.95990 0.94261 0.93217 0.86436 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.80 6.07 -27.88 -0.17 -0.97 16 3 C -0.09 -1.11 5.13 -104.62 -0.54 -1.65 16 4 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 5 C -0.08 -1.18 7.93 -39.58 -0.31 -1.50 16 6 C -0.06 -0.88 4.40 -104.62 -0.46 -1.34 16 7 C -0.08 -1.14 2.90 -92.92 -0.27 -1.41 16 8 H 0.10 1.22 7.88 -51.93 -0.41 0.81 16 9 C -0.14 -1.71 8.90 37.16 0.33 -1.38 16 10 C 0.51 9.80 5.59 -10.98 -0.06 9.74 16 11 O -0.54 -12.42 12.25 5.56 0.07 -12.35 16 12 N -0.71 -14.41 4.91 -54.93 -0.27 -14.68 16 13 C 0.27 6.77 2.24 -69.09 -0.15 6.61 16 14 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 15 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 18 N -0.88 -24.72 11.29 55.43 0.63 -24.10 16 19 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 24 C -0.14 -3.10 8.52 37.16 0.32 -2.79 16 25 C -0.11 -1.51 9.67 -39.58 -0.38 -1.89 16 26 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.12 1.91 7.52 -52.49 -0.39 1.52 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 36 H 0.06 0.82 7.39 -51.93 -0.38 0.43 16 37 H 0.39 6.86 7.96 -40.82 -0.32 6.53 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 43 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 44 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -30.06 359.89 -9.30 -39.37 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.49 Total: 7.96 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.64 Total: -17.15 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.36 Total: -38.78 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.06 -9.30 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.000 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds