Wall clock time and date at job start Tue Mar 31 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.50703 * 109.46981 * 299.97986 * 7 6 5 11 11 O 1.21279 * 120.00250 * 359.97438 * 10 7 6 12 12 N 1.34780 * 119.99988 * 179.97438 * 10 7 6 13 13 C 1.46497 * 120.00251 * 179.97438 * 12 10 7 14 14 H 1.09003 * 109.46808 * 35.00054 * 13 12 10 15 15 C 1.50695 * 109.47351 * 155.00093 * 13 12 10 16 16 H 1.08002 * 120.00113 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00291 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99889 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00149 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47045 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47123 * 119.99768 * 19 17 15 22 22 H 1.48499 * 109.47172 * 240.00091 * 19 17 15 23 23 C 1.53001 * 109.47243 * 275.00025 * 13 12 10 24 24 C 1.53008 * 109.46999 * 64.99991 * 23 13 12 25 25 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 26 26 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 34 34 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 35 35 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 36 36 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 37 37 H 0.97002 * 119.99972 * 0.02562 * 12 10 7 38 38 H 0.96993 * 119.99723 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.47386 * 184.99635 * 23 13 12 40 40 H 1.09001 * 109.47298 * 305.00069 * 23 13 12 41 41 H 1.08995 * 109.46989 * 179.97438 * 24 23 13 42 42 H 1.08999 * 109.46761 * 300.00027 * 24 23 13 43 43 H 1.09001 * 109.47032 * 59.99915 * 24 23 13 44 44 H 1.08002 * 120.00166 * 179.97438 * 25 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.7834 5.5127 -0.7096 11 8 5.2746 4.5038 -1.1696 12 7 5.4252 6.6915 -0.8331 13 6 6.7163 6.7539 -1.5224 14 1 6.7246 6.0374 -2.3438 15 6 6.9292 8.1433 -2.0655 16 1 6.1777 8.9038 -1.9129 17 6 8.0830 8.4435 -2.7581 18 7 8.9980 7.5174 -2.9444 19 14 8.3465 10.1657 -3.4320 20 1 7.1779 11.0155 -3.0894 21 1 9.5743 10.7489 -2.8337 22 1 8.4973 10.1020 -4.9079 23 6 7.8370 6.4139 -0.5378 24 6 7.6916 4.9607 -0.0815 25 6 2.7234 3.3758 1.1971 26 6 2.2627 2.0725 1.1971 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0926 1.5598 -2.1325 33 1 2.9045 3.8845 -2.1325 34 1 1.4869 6.2984 -0.2090 35 1 2.8103 7.3727 -0.7227 36 1 2.3273 6.0019 -1.7499 37 1 5.0325 7.4984 -0.4649 38 1 9.8098 7.7287 -3.4314 39 1 8.8024 6.5464 -1.0262 40 1 7.7737 7.0744 0.3270 41 1 8.4902 4.7184 0.6196 42 1 6.7262 4.8283 0.4070 43 1 7.7550 4.3003 -0.9463 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358080903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:30 Heat of formation + Delta-G solvation = -57.231589 kcal Electronic energy + Delta-G solvation = -23158.534565 eV Core-core repulsion = 19946.041429 eV Total energy + Delta-G solvation = -3212.493135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25146 -39.88786 -37.04338 -35.84935 -34.36881 -33.58715 -32.37073 -31.76787 -29.48524 -28.77388 -25.87699 -25.05104 -23.88790 -23.61057 -22.10508 -21.32324 -20.73943 -18.84362 -17.51039 -17.38198 -17.00259 -16.47328 -16.22826 -15.94215 -15.62822 -14.93505 -14.70867 -14.56149 -14.54698 -14.37735 -13.97341 -13.87555 -13.57364 -13.27612 -13.21316 -13.10471 -12.89121 -12.82495 -12.70583 -12.46147 -12.25091 -12.13687 -12.03830 -11.97052 -11.61761 -11.58563 -11.56702 -11.02819 -10.58510 -10.41774 -9.72907 -9.55782 -9.35473 -8.15558 -6.32669 0.46588 0.58934 1.43382 1.44714 1.56316 1.93957 2.36882 2.64271 3.01982 3.14141 3.66613 3.88186 3.97344 4.10368 4.17255 4.26793 4.34263 4.45327 4.48718 4.55442 4.56983 4.61821 4.72464 4.75776 4.76987 4.87397 4.94466 5.07142 5.09267 5.11002 5.19618 5.23873 5.27130 5.29060 5.41300 5.44616 5.57117 5.58090 5.66678 5.77721 5.78194 5.81637 5.96164 6.18404 6.19287 6.76682 7.06475 7.35158 7.66587 8.89893 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.003410 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.137605 B = 8208.059015 C = 8451.421386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.099 4.099 6 C -0.079 4.079 7 C -0.066 4.066 8 H 0.123 0.877 9 C -0.133 4.133 10 C 0.501 3.499 11 O -0.580 6.580 12 N -0.705 5.705 13 C 0.280 3.720 14 H -0.005 1.005 15 C -0.544 4.544 16 H 0.072 0.928 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.969 3.031 20 H -0.259 1.259 21 H -0.279 1.279 22 H -0.285 1.285 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.126 4.126 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.402 0.598 38 H 0.264 0.736 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.022 0.978 44 H 0.141 0.859 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.897 -7.796 9.441 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.153 4.153 5 C -0.118 4.118 6 C -0.079 4.079 7 C -0.087 4.087 8 H 0.141 0.859 9 C -0.191 4.191 10 C 0.288 3.712 11 O -0.460 6.460 12 N -0.355 5.355 13 C 0.176 3.824 14 H 0.013 0.987 15 C -0.583 4.583 16 H 0.090 0.910 17 C -0.186 4.186 18 N -0.555 5.555 19 Si 0.794 3.206 20 H -0.183 1.183 21 H -0.205 1.205 22 H -0.212 1.212 23 C -0.159 4.159 24 C -0.178 4.178 25 C -0.135 4.135 26 C -0.144 4.144 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.237 0.763 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.158 0.842 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.365 -8.521 9.019 20.537 hybrid contribution 0.698 1.124 -0.773 1.532 sum -15.667 -7.398 8.246 19.188 Atomic orbital electron populations 1.21713 0.93798 1.02415 1.01956 1.20577 0.96872 0.91238 1.03352 1.20165 0.98794 0.97248 0.92832 1.21143 1.00988 0.94579 0.98553 1.20909 0.97949 0.95433 0.97465 1.19460 0.99647 0.94953 0.93867 1.20348 0.91729 0.94502 1.02098 0.85932 1.21760 0.98677 0.98722 0.99923 1.21042 0.86997 0.83216 0.79921 1.90669 1.68995 1.35827 1.50536 1.46241 1.22441 1.09544 1.57229 1.18307 0.79241 0.95337 0.89469 0.98740 1.21617 1.04511 0.96399 1.35738 0.91021 1.25778 0.95462 1.01345 0.96017 1.70064 1.09222 1.34910 1.41264 0.85342 0.78413 0.79268 0.77577 1.18327 1.20510 1.21153 1.21780 1.02153 0.94003 0.97993 1.21655 0.99749 0.97335 0.99086 1.21261 0.99445 0.95403 0.97371 1.21234 1.00237 0.94633 0.98287 0.92432 0.93230 0.91023 0.90006 0.91076 0.85723 0.88394 0.89309 0.90726 0.93524 0.76309 0.92702 0.91201 0.94016 0.93774 0.93719 0.95910 0.84164 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 71.98 0.71 -1.28 16 2 C -0.08 -1.42 6.07 29.85 0.18 -1.23 16 3 C -0.09 -2.10 5.13 -19.87 -0.10 -2.21 16 4 C -0.13 -3.68 9.70 22.27 0.22 -3.47 16 5 C -0.10 -3.13 7.93 22.27 0.18 -2.95 16 6 C -0.08 -2.29 4.40 -19.87 -0.09 -2.38 16 7 C -0.07 -1.84 2.90 -12.28 -0.04 -1.87 16 8 H 0.12 2.77 7.88 -2.39 -0.02 2.75 16 9 C -0.13 -3.11 8.90 71.98 0.64 -2.47 16 10 C 0.50 19.62 5.59 87.66 0.49 20.11 16 11 O -0.58 -27.73 12.25 -3.03 -0.04 -27.77 16 12 N -0.71 -28.79 4.91 -446.10 -2.19 -30.98 16 13 C 0.28 14.40 2.24 44.24 0.10 14.49 16 14 H -0.01 -0.33 7.58 -2.39 -0.02 -0.34 16 15 C -0.54 -28.75 8.73 25.60 0.22 -28.52 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 17 C 0.01 0.75 5.29 84.65 0.45 1.19 16 18 N -0.92 -52.82 11.29 21.45 0.24 -52.58 16 19 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 23 C -0.12 -6.00 5.45 30.60 0.17 -5.83 16 24 C -0.12 -5.59 8.52 71.98 0.61 -4.97 16 25 C -0.12 -2.87 9.67 22.27 0.22 -2.65 16 26 C -0.13 -2.81 9.70 22.27 0.22 -2.59 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 31 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 32 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.10 3.38 7.52 -2.91 -0.02 3.36 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.07 1.60 7.56 -2.39 -0.02 1.58 16 36 H 0.05 1.23 7.39 -2.39 -0.02 1.21 16 37 H 0.40 13.83 7.96 -92.71 -0.74 13.09 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 40 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 42 H 0.04 1.99 5.65 -2.39 -0.01 1.97 16 43 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 44 H 0.14 2.71 7.95 -2.91 -0.02 2.69 16 45 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -67.37 359.89 4.44 -62.93 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.22 Total: 30.85 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 4.17 Total: -26.64 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.95 Total: -83.57 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.04 Total: -27.77 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -67.37 4.44 -62.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.703 kcal (2) G-P(sol) polarization free energy of solvation -67.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds