Wall clock time and date at job start Tue Mar 31 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.50703 * 109.46981 * 299.97986 * 7 6 5 11 11 O 1.21279 * 120.00250 * 359.97438 * 10 7 6 12 12 N 1.34780 * 119.99988 * 179.97438 * 10 7 6 13 13 C 1.46497 * 120.00251 * 179.97438 * 12 10 7 14 14 H 1.08999 * 109.47161 * 325.00197 * 13 12 10 15 15 C 1.50697 * 109.47172 * 204.99956 * 13 12 10 16 16 H 1.08000 * 120.00043 * 0.02562 * 15 13 12 17 17 C 1.37881 * 119.99831 * 179.97438 * 15 13 12 18 18 N 1.31512 * 119.99792 * 180.02562 * 17 15 13 19 19 Si 1.86800 * 119.99990 * 0.02562 * 17 15 13 20 20 H 1.48499 * 109.47015 * 90.00126 * 19 17 15 21 21 H 1.48506 * 109.46992 * 209.99875 * 19 17 15 22 22 H 1.48500 * 109.47245 * 329.99488 * 19 17 15 23 23 C 1.52998 * 109.46840 * 84.99961 * 13 12 10 24 24 C 1.53001 * 109.47238 * 294.99986 * 23 13 12 25 25 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 26 26 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 34 34 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 35 35 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 36 36 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 37 37 H 0.97002 * 119.99972 * 0.02562 * 12 10 7 38 38 H 0.97005 * 120.00089 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47580 * 55.00592 * 23 13 12 40 40 H 1.09009 * 109.46966 * 175.00143 * 23 13 12 41 41 H 1.09003 * 109.46496 * 180.02562 * 24 23 13 42 42 H 1.09001 * 109.47181 * 299.99806 * 24 23 13 43 43 H 1.08994 * 109.47154 * 60.00609 * 24 23 13 44 44 H 1.08002 * 120.00166 * 179.97438 * 25 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.7834 5.5127 -0.7096 11 8 5.2746 4.5038 -1.1696 12 7 5.4252 6.6915 -0.8331 13 6 6.7163 6.7539 -1.5224 14 1 7.2795 5.8424 -1.3221 15 6 7.4944 7.9446 -1.0247 16 1 7.0697 8.5902 -0.2701 17 6 8.7488 8.2094 -1.5320 18 7 9.4281 9.2483 -1.0974 19 14 9.4836 7.0925 -2.8367 20 1 9.1058 7.5898 -4.1839 21 1 10.9630 7.0873 -2.7078 22 1 8.9662 5.7124 -2.6553 23 6 6.4843 6.8895 -3.0285 24 6 5.8047 5.6242 -3.5559 25 6 2.7234 3.3758 1.1971 26 6 2.2627 2.0725 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0926 1.5598 -2.1325 33 1 2.9045 3.8845 -2.1325 34 1 2.3273 6.0019 -1.7499 35 1 1.4869 6.2984 -0.2090 36 1 2.8103 7.3727 -0.7227 37 1 5.0325 7.4984 -0.4649 38 1 10.3105 9.4348 -1.4545 39 1 5.8464 7.7520 -3.2218 40 1 7.4412 7.0250 -3.5328 41 1 5.6398 5.7207 -4.6290 42 1 6.4426 4.7617 -3.3628 43 1 4.8479 5.4886 -3.0517 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358080905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:34 Heat of formation + Delta-G solvation = -33.337097 kcal Electronic energy + Delta-G solvation = -23301.129648 eV Core-core repulsion = 20089.672655 eV Total energy + Delta-G solvation = -3211.456993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07975 -38.73614 -35.62967 -34.70970 -32.91512 -32.18291 -31.21254 -30.80211 -28.55306 -27.38985 -24.86137 -23.32052 -22.68875 -22.48836 -21.04271 -20.07618 -19.37143 -17.26789 -16.43754 -16.04867 -15.60923 -15.27793 -15.14468 -14.64009 -14.17397 -13.87734 -13.79026 -13.49115 -13.35718 -13.06916 -13.02918 -12.61931 -12.47655 -12.20947 -11.99367 -11.87369 -11.77651 -11.51048 -11.42771 -11.18419 -11.02909 -10.88585 -10.72344 -10.70587 -10.60904 -9.91858 -9.53844 -9.21905 -9.03439 -8.74771 -8.72565 -8.39052 -8.02324 -6.20923 -4.23101 1.43079 1.56246 3.23100 3.29736 3.35578 3.41036 3.75322 4.15331 4.31925 4.63424 4.76513 4.81451 5.00763 5.08997 5.12919 5.19743 5.25090 5.30397 5.40426 5.48620 5.56638 5.58984 5.70562 5.78011 5.82816 5.90622 5.97101 5.98697 6.02967 6.11920 6.15070 6.20065 6.22772 6.53112 6.66040 6.69497 6.70707 6.78047 6.86175 6.96873 7.12541 7.29180 7.33549 7.54065 8.17676 8.56089 8.77040 8.99839 9.40533 10.91216 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.003676 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.049336 B = 7615.477469 C = 7896.306219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.121 4.121 5 C -0.078 4.078 6 C -0.060 4.060 7 C -0.077 4.077 8 H 0.099 0.901 9 C -0.139 4.139 10 C 0.507 3.493 11 O -0.541 6.541 12 N -0.701 5.701 13 C 0.243 3.757 14 H 0.048 0.952 15 C -0.534 4.534 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.893 5.893 19 Si 0.883 3.117 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.260 1.260 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.111 4.111 26 C -0.123 4.123 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.394 0.606 38 H 0.267 0.733 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.030 0.970 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.119 0.881 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.862 -12.145 1.933 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.139 4.139 5 C -0.096 4.096 6 C -0.061 4.061 7 C -0.098 4.098 8 H 0.117 0.883 9 C -0.196 4.196 10 C 0.292 3.708 11 O -0.419 6.419 12 N -0.349 5.349 13 C 0.139 3.861 14 H 0.066 0.934 15 C -0.572 4.572 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.530 5.530 19 Si 0.713 3.287 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.185 1.185 23 C -0.176 4.176 24 C -0.200 4.200 25 C -0.129 4.129 26 C -0.141 4.141 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.227 0.773 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.137 0.863 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.306 -12.748 1.585 21.553 hybrid contribution 0.485 0.062 -0.524 0.717 sum -16.822 -12.686 1.061 21.096 Atomic orbital electron populations 1.21741 0.94953 1.01401 1.02167 1.20517 0.95961 0.93012 1.02630 1.19813 0.99774 0.95983 0.93313 1.20939 1.00735 0.94933 0.97279 1.20887 0.96575 0.94428 0.97712 1.19336 0.98719 0.94602 0.93426 1.20354 0.94144 0.93747 1.01587 0.88257 1.21773 0.98193 0.99016 1.00639 1.20236 0.86072 0.84210 0.80320 1.90682 1.67617 1.34612 1.48986 1.46152 1.22792 1.08799 1.57131 1.19120 0.80683 0.98708 0.87547 0.93421 1.21065 1.01309 1.10460 1.24393 0.90238 1.24836 0.96483 0.94869 0.96346 1.69870 1.12921 1.27173 1.43020 0.86903 0.77516 0.82410 0.81892 1.20265 1.22204 1.18478 1.22278 0.99610 0.96883 0.98870 1.21872 1.01177 0.98783 0.98186 1.20976 0.99800 0.94879 0.97266 1.20872 1.01124 0.94832 0.97256 0.92654 0.92631 0.92594 0.91270 0.91228 0.86532 0.86339 0.92041 0.91736 0.91461 0.77299 0.92310 0.92353 0.92879 0.95093 0.92917 0.92915 0.86291 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 37.16 0.37 -0.76 16 2 C -0.08 -0.76 6.07 -27.88 -0.17 -0.93 16 3 C -0.09 -1.04 5.13 -104.62 -0.54 -1.58 16 4 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 5 C -0.08 -1.11 7.93 -39.58 -0.31 -1.43 16 6 C -0.06 -0.85 4.40 -104.62 -0.46 -1.31 16 7 C -0.08 -1.06 2.90 -92.92 -0.27 -1.33 16 8 H 0.10 1.21 7.88 -51.93 -0.41 0.80 16 9 C -0.14 -1.57 8.90 37.16 0.33 -1.24 16 10 C 0.51 9.25 5.59 -10.98 -0.06 9.18 16 11 O -0.54 -11.65 12.25 5.56 0.07 -11.58 16 12 N -0.70 -13.56 4.91 -54.94 -0.27 -13.83 16 13 C 0.24 5.72 1.83 -69.09 -0.13 5.59 16 14 H 0.05 1.26 6.63 -51.93 -0.34 0.91 16 15 C -0.53 -14.37 9.31 -34.44 -0.32 -14.69 16 16 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 17 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 18 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 19 Si 0.88 21.88 24.41 -169.99 -4.15 17.73 16 20 H -0.28 -6.62 6.83 56.52 0.39 -6.23 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 23 C -0.14 -3.04 5.11 -26.73 -0.14 -3.18 16 24 C -0.14 -2.86 8.51 37.16 0.32 -2.54 16 25 C -0.11 -1.42 9.67 -39.58 -0.38 -1.80 16 26 C -0.12 -1.45 9.70 -39.58 -0.38 -1.84 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.73 7.52 -52.49 -0.39 1.34 16 34 H 0.06 0.72 7.39 -51.93 -0.38 0.34 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.72 7.56 -51.93 -0.39 0.32 16 37 H 0.39 6.74 7.96 -40.82 -0.32 6.41 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.24 3.22 -51.92 -0.17 1.08 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 43 H 0.05 1.01 5.64 -51.93 -0.29 0.72 16 44 H 0.12 1.30 7.95 -52.49 -0.42 0.88 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -31.24 353.12 -8.24 -39.48 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.36 Total: 6.26 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.63 Total: -17.68 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.50 Total: -39.53 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.24 -8.24 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.144 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds