Wall clock time and date at job start Tue Mar 31 2020 06:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46657 * 2 1 4 4 C 1.53000 * 109.47134 * 60.00248 * 3 2 1 5 5 C 1.52993 * 109.47463 * 299.99757 * 3 2 1 6 6 C 1.50699 * 109.46848 * 179.97438 * 3 2 1 7 7 C 1.38286 * 119.92767 * 180.02562 * 6 3 2 8 8 C 1.38114 * 120.06601 * 180.25261 * 7 6 3 9 9 C 1.38873 * 119.93231 * 359.51868 * 8 7 6 10 10 N 1.39924 * 120.07232 * 180.21063 * 9 8 7 11 11 C 1.34777 * 120.00128 * 33.46006 * 10 9 8 12 12 O 1.21284 * 119.99696 * 5.26991 * 11 10 9 13 13 C 1.50697 * 120.00105 * 185.27367 * 11 10 9 14 14 C 1.52997 * 109.47339 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47339 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00219 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99965 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99870 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00268 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46858 * 90.00003 * 19 17 15 21 21 H 1.48497 * 109.47520 * 209.99878 * 19 17 15 22 22 H 1.48503 * 109.47084 * 330.00308 * 19 17 15 23 23 C 1.38869 * 119.85638 * 0.49926 * 9 8 7 24 24 C 1.38110 * 119.93217 * 359.73411 * 23 9 8 25 25 H 1.08999 * 109.46703 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47323 * 299.99878 * 1 2 3 27 27 H 1.09000 * 109.47020 * 60.00278 * 1 2 3 28 28 H 1.09000 * 109.47323 * 240.00122 * 2 1 3 29 29 H 1.08999 * 109.46555 * 119.99974 * 2 1 3 30 30 H 1.09000 * 109.47057 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47106 * 299.99512 * 4 3 2 32 32 H 1.09000 * 109.47597 * 59.99633 * 4 3 2 33 33 H 1.09000 * 109.47149 * 300.00265 * 5 3 2 34 34 H 1.08998 * 109.46956 * 60.00378 * 5 3 2 35 35 H 1.09000 * 109.47527 * 180.02562 * 5 3 2 36 36 H 1.07990 * 119.96579 * 359.97438 * 7 6 3 37 37 H 1.08005 * 120.03422 * 179.72608 * 8 7 6 38 38 H 0.97002 * 119.99850 * 213.46174 * 10 9 8 39 39 H 1.08998 * 109.46975 * 300.00057 * 13 11 10 40 40 H 1.09008 * 109.47124 * 59.99687 * 13 11 10 41 41 H 1.08998 * 109.47439 * 300.00147 * 14 13 11 42 42 H 1.09008 * 109.46963 * 59.99963 * 14 13 11 43 43 H 0.97002 * 119.99999 * 179.97438 * 18 17 15 44 44 H 1.07999 * 120.03573 * 179.70281 * 23 9 8 45 45 H 1.08001 * 119.96839 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4426 0.0006 7 6 4.2368 2.6411 0.0013 8 6 5.6180 2.6444 -0.0034 9 6 6.3139 1.4427 0.0013 10 7 7.7131 1.4427 0.0011 11 6 8.3871 2.4191 0.6405 12 8 7.7846 3.2430 1.2957 13 6 9.8893 2.4872 0.5414 14 6 10.4005 3.6796 1.3523 15 6 11.9027 3.7473 1.2537 16 1 12.4392 3.0135 0.6706 17 6 12.5922 4.7461 1.9080 18 7 13.9032 4.8048 1.8223 19 14 11.6642 6.0157 2.9160 20 1 11.5289 5.5347 4.3145 21 1 12.4109 7.2993 2.9042 22 1 10.3150 6.2225 2.3310 23 6 5.6181 0.2409 0.0003 24 6 4.2370 0.2442 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8935 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8929 3.1915 1.2490 31 1 0.4400 2.1637 1.2493 32 1 1.8933 1.6499 2.1393 33 1 1.8934 1.6499 -2.1392 34 1 0.4400 2.1637 -1.2492 35 1 1.8937 3.1913 -1.2494 36 1 3.6951 3.5753 0.0009 37 1 6.1562 3.5808 -0.0074 38 1 8.1980 0.7400 -0.4594 39 1 10.3214 1.5673 0.9353 40 1 10.1795 2.6069 -0.5025 41 1 9.9683 4.5993 0.9580 42 1 10.1102 3.5602 2.3963 43 1 14.3883 5.5077 2.2823 44 1 6.1564 -0.6954 -0.0009 45 1 3.6953 -0.6901 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360491547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:35 Heat of formation + Delta-G solvation = -37.468000 kcal Electronic energy + Delta-G solvation = -22373.622067 eV Core-core repulsion = 19161.985945 eV Total energy + Delta-G solvation = -3211.636122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52996 -39.30376 -37.01696 -34.26329 -33.55392 -31.49056 -31.35577 -30.40367 -28.76000 -27.50776 -26.21066 -24.69287 -23.07125 -21.98966 -21.12827 -19.73124 -18.98760 -17.75411 -17.19194 -16.15799 -16.01837 -15.37385 -15.00386 -14.98546 -14.34593 -14.10945 -13.93311 -13.74831 -13.57567 -13.44969 -13.10830 -12.86276 -12.59684 -12.37108 -12.24385 -12.07125 -12.02577 -11.51925 -11.46496 -11.40601 -11.01253 -10.94425 -10.77493 -10.54444 -10.21999 -10.11757 -10.05413 -9.81442 -9.34119 -9.22061 -8.87699 -8.53671 -7.92154 -6.05690 -4.04921 1.29739 1.43637 2.95098 3.29587 3.36123 3.42895 3.53015 3.82817 4.40044 4.44956 4.48371 4.68377 4.89789 4.99434 5.04354 5.09389 5.16074 5.22519 5.29609 5.30993 5.40947 5.45015 5.52748 5.65375 5.65634 5.66322 5.70942 5.73872 5.82250 5.88393 5.97962 6.00552 6.05139 6.08078 6.13183 6.37358 6.40426 6.59318 6.63204 6.64274 7.10288 7.30822 7.37445 7.59229 7.74827 8.41981 8.51421 8.96788 9.56985 11.07006 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.002756 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.269048 B =10158.231528 C =10641.796693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.021 4.021 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.096 4.096 7 C -0.095 4.095 8 C -0.121 4.121 9 C 0.154 3.846 10 N -0.685 5.685 11 C 0.509 3.491 12 O -0.519 6.519 13 C -0.121 4.121 14 C 0.001 3.999 15 C -0.526 4.526 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.902 5.902 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.261 1.261 23 C -0.151 4.151 24 C -0.103 4.103 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.409 0.591 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.376 -11.013 -6.521 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.021 4.021 4 C -0.198 4.198 5 C -0.197 4.197 6 C -0.096 4.096 7 C -0.113 4.113 8 C -0.141 4.141 9 C 0.059 3.941 10 N -0.331 5.331 11 C 0.299 3.701 12 O -0.393 6.393 13 C -0.161 4.161 14 C -0.037 4.037 15 C -0.564 4.564 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.541 5.541 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.186 1.186 23 C -0.172 4.172 24 C -0.122 4.122 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.245 0.755 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -26.558 -10.264 -5.981 29.093 hybrid contribution 0.064 0.274 0.361 0.458 sum -26.494 -9.990 -5.620 28.867 Atomic orbital electron populations 1.21916 0.95900 1.01472 1.02096 1.21663 0.95807 0.95709 1.02074 1.19435 0.90780 0.95818 0.96052 1.21951 1.00716 1.00353 0.96802 1.21940 1.00758 1.00284 0.96734 1.19711 0.94568 0.93111 1.02260 1.20821 0.93383 0.97572 0.99551 1.21193 0.94067 0.97907 1.00924 1.17856 0.83251 0.93956 0.99055 1.43908 1.04292 1.30026 1.54884 1.21794 0.91752 0.79521 0.77041 1.90670 1.70590 1.39157 1.38884 1.21710 0.87162 1.03549 1.03694 1.19383 0.96582 0.92500 0.95194 1.21085 0.89538 1.13863 1.31925 0.90876 1.24974 0.94716 0.97507 0.96036 1.69910 1.06497 1.33942 1.43755 0.86794 0.80727 0.80989 0.81028 1.20219 1.21401 1.18550 1.20878 0.94502 0.96400 1.05379 1.20881 0.93154 0.97794 1.00323 0.92965 0.92395 0.92424 0.91684 0.91665 0.92445 0.92215 0.92510 0.92569 0.92208 0.92480 0.86142 0.84780 0.75510 0.89293 0.89141 0.95750 0.96193 0.92671 0.85949 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.21 37.16 0.34 -0.60 16 2 C -0.12 -0.82 3.65 -26.73 -0.10 -0.92 16 3 C -0.02 -0.17 0.63 -155.67 -0.10 -0.27 16 4 C -0.14 -1.16 7.93 37.16 0.29 -0.87 16 5 C -0.14 -1.07 7.93 37.15 0.29 -0.77 16 6 C -0.10 -1.03 4.76 -104.59 -0.50 -1.53 16 7 C -0.09 -1.17 8.70 -39.61 -0.34 -1.52 16 8 C -0.12 -1.79 8.66 -39.39 -0.34 -2.14 16 9 C 0.15 2.15 6.28 -83.69 -0.53 1.63 16 10 N -0.69 -9.53 5.34 -9.86 -0.05 -9.58 16 11 C 0.51 9.16 7.57 -10.99 -0.08 9.08 16 12 O -0.52 -11.25 13.68 5.55 0.08 -11.18 16 13 C -0.12 -2.29 5.64 -27.89 -0.16 -2.44 16 14 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 15 C -0.53 -14.92 9.66 -34.44 -0.33 -15.26 16 16 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 19 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 23 C -0.15 -1.74 9.96 -39.39 -0.39 -2.13 16 24 C -0.10 -1.08 8.97 -39.61 -0.36 -1.44 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 27 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 28 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 29 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 30 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 31 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 35 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 36 H 0.12 1.32 7.09 -52.49 -0.37 0.95 16 37 H 0.13 2.27 6.43 -52.48 -0.34 1.93 16 38 H 0.41 4.24 8.82 -40.82 -0.36 3.88 16 39 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 41 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 42 H 0.02 0.51 7.53 -51.92 -0.39 0.11 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.13 1.04 5.88 -52.49 -0.31 0.73 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -33.25 353.01 -8.18 -41.43 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.15 Total: 0.55 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.48 Total: -17.29 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.72 Total: -36.67 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.25 -8.18 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360491547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.965 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds