Wall clock time and date at job start Tue Mar 31 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46657 * 2 1 4 4 C 1.53000 * 109.47134 * 60.00248 * 3 2 1 5 5 C 1.52993 * 109.47463 * 299.99757 * 3 2 1 6 6 C 1.50699 * 109.46848 * 179.97438 * 3 2 1 7 7 C 1.38286 * 119.92767 * 180.02562 * 6 3 2 8 8 C 1.38114 * 120.06601 * 180.25261 * 7 6 3 9 9 C 1.38873 * 119.93231 * 359.51868 * 8 7 6 10 10 N 1.39924 * 120.07232 * 180.21063 * 9 8 7 11 11 C 1.34777 * 120.00128 * 33.46006 * 10 9 8 12 12 O 1.21284 * 119.99696 * 5.26991 * 11 10 9 13 13 C 1.50697 * 120.00105 * 185.27367 * 11 10 9 14 14 C 1.52997 * 109.47339 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.47339 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00219 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99965 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99870 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00268 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46858 * 90.00003 * 19 17 15 21 21 H 1.48497 * 109.47520 * 209.99878 * 19 17 15 22 22 H 1.48503 * 109.47084 * 330.00308 * 19 17 15 23 23 C 1.38869 * 119.85638 * 0.49926 * 9 8 7 24 24 C 1.38110 * 119.93217 * 359.73411 * 23 9 8 25 25 H 1.08999 * 109.46703 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47323 * 299.99878 * 1 2 3 27 27 H 1.09000 * 109.47020 * 60.00278 * 1 2 3 28 28 H 1.09000 * 109.47323 * 240.00122 * 2 1 3 29 29 H 1.08999 * 109.46555 * 119.99974 * 2 1 3 30 30 H 1.09000 * 109.47057 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47106 * 299.99512 * 4 3 2 32 32 H 1.09000 * 109.47597 * 59.99633 * 4 3 2 33 33 H 1.09000 * 109.47149 * 300.00265 * 5 3 2 34 34 H 1.08998 * 109.46956 * 60.00378 * 5 3 2 35 35 H 1.09000 * 109.47527 * 180.02562 * 5 3 2 36 36 H 1.07990 * 119.96579 * 359.97438 * 7 6 3 37 37 H 1.08005 * 120.03422 * 179.72608 * 8 7 6 38 38 H 0.97002 * 119.99850 * 213.46174 * 10 9 8 39 39 H 1.08998 * 109.46975 * 300.00057 * 13 11 10 40 40 H 1.09008 * 109.47124 * 59.99687 * 13 11 10 41 41 H 1.08998 * 109.47439 * 300.00147 * 14 13 11 42 42 H 1.09008 * 109.46963 * 59.99963 * 14 13 11 43 43 H 0.97002 * 119.99999 * 179.97438 * 18 17 15 44 44 H 1.07999 * 120.03573 * 179.70281 * 23 9 8 45 45 H 1.08001 * 119.96839 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4426 0.0006 7 6 4.2368 2.6411 0.0013 8 6 5.6180 2.6444 -0.0034 9 6 6.3139 1.4427 0.0013 10 7 7.7131 1.4427 0.0011 11 6 8.3871 2.4191 0.6405 12 8 7.7846 3.2430 1.2957 13 6 9.8893 2.4872 0.5414 14 6 10.4005 3.6796 1.3523 15 6 11.9027 3.7473 1.2537 16 1 12.4392 3.0135 0.6706 17 6 12.5922 4.7461 1.9080 18 7 13.9032 4.8048 1.8223 19 14 11.6642 6.0157 2.9160 20 1 11.5289 5.5347 4.3145 21 1 12.4109 7.2993 2.9042 22 1 10.3150 6.2225 2.3310 23 6 5.6181 0.2409 0.0003 24 6 4.2370 0.2442 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8935 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8929 3.1915 1.2490 31 1 0.4400 2.1637 1.2493 32 1 1.8933 1.6499 2.1393 33 1 1.8934 1.6499 -2.1392 34 1 0.4400 2.1637 -1.2492 35 1 1.8937 3.1913 -1.2494 36 1 3.6951 3.5753 0.0009 37 1 6.1562 3.5808 -0.0074 38 1 8.1980 0.7400 -0.4594 39 1 10.3214 1.5673 0.9353 40 1 10.1795 2.6069 -0.5025 41 1 9.9683 4.5993 0.9580 42 1 10.1102 3.5602 2.3963 43 1 14.3883 5.5077 2.2823 44 1 6.1564 -0.6954 -0.0009 45 1 3.6953 -0.6901 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360491547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:34 Heat of formation + Delta-G solvation = -56.710176 kcal Electronic energy + Delta-G solvation = -22374.456470 eV Core-core repulsion = 19161.985945 eV Total energy + Delta-G solvation = -3212.470525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63822 -40.35833 -37.95431 -35.59803 -35.38935 -33.37692 -32.23371 -31.24867 -29.76506 -28.12791 -27.92521 -25.45332 -24.30877 -23.03267 -22.53726 -21.16882 -19.73313 -19.27466 -18.69550 -17.68838 -16.94197 -16.65772 -16.28443 -15.92563 -15.55513 -15.42199 -15.11001 -14.70601 -14.60632 -14.56926 -14.34689 -14.16980 -13.93385 -13.46351 -13.40577 -12.93520 -12.83494 -12.71750 -12.65240 -12.33324 -12.14341 -12.04655 -12.00173 -11.79599 -11.55242 -11.50553 -11.41928 -11.23751 -11.11737 -10.79808 -10.74646 -9.84524 -8.95405 -8.33212 -6.36160 0.30155 0.48048 1.31571 1.33720 1.48286 1.60718 2.10225 2.33084 2.86271 3.02429 3.69916 3.74617 3.86416 4.08239 4.10867 4.14054 4.33257 4.38487 4.44449 4.46581 4.55726 4.57810 4.66457 4.70999 4.81972 4.85213 4.94932 4.97107 5.05624 5.11837 5.16299 5.20866 5.21499 5.28916 5.30660 5.40329 5.41564 5.42731 5.53952 5.54807 5.58864 5.63833 5.76688 6.11121 6.21166 6.45706 6.70310 7.16704 7.29207 8.82313 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.002756 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.269048 B =10158.231528 C =10641.796693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.020 4.020 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.090 4.090 7 C -0.103 4.103 8 C -0.145 4.145 9 C 0.126 3.874 10 N -0.665 5.665 11 C 0.514 3.486 12 O -0.563 6.563 13 C -0.114 4.114 14 C 0.005 3.995 15 C -0.529 4.529 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.942 5.942 19 Si 0.937 3.063 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.142 4.142 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.427 0.573 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.267 0.733 44 H 0.150 0.850 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.926 -12.787 -6.813 32.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.020 4.020 4 C -0.198 4.198 5 C -0.196 4.196 6 C -0.090 4.090 7 C -0.122 4.122 8 C -0.166 4.166 9 C 0.032 3.968 10 N -0.311 5.311 11 C 0.304 3.696 12 O -0.441 6.441 13 C -0.153 4.153 14 C -0.033 4.033 15 C -0.567 4.567 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.583 5.583 19 Si 0.762 3.238 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.163 4.163 24 C -0.120 4.120 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.144 0.856 37 H 0.122 0.878 38 H 0.266 0.734 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.076 0.924 44 H 0.168 0.832 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -29.121 -12.084 -6.306 32.153 hybrid contribution 0.787 0.747 0.388 1.152 sum -28.334 -11.337 -5.919 31.087 Atomic orbital electron populations 1.21904 0.94949 1.02076 1.02317 1.21658 0.96654 0.94468 1.02331 1.19491 0.89016 0.97088 0.96390 1.21956 1.01773 0.99698 0.96410 1.21934 1.01720 0.99729 0.96232 1.20052 0.96081 0.92577 1.00332 1.20930 0.92577 0.98844 0.99810 1.21121 0.95175 0.97297 1.02963 1.18036 0.82934 0.94700 1.01109 1.43539 1.04619 1.29209 1.53758 1.21467 0.91274 0.79861 0.77025 1.90660 1.71163 1.41106 1.41172 1.21520 0.88144 1.01899 1.03786 1.19230 0.94088 0.94515 0.95508 1.21410 0.91485 1.12962 1.30819 0.92937 1.25795 0.95483 0.99716 0.97427 1.70020 1.07937 1.35125 1.45192 0.85842 0.79328 0.78933 0.79681 1.19418 1.20337 1.18658 1.21176 0.95035 0.96338 1.03701 1.21274 0.92962 0.98814 0.98948 0.92232 0.92345 0.92037 0.91132 0.91638 0.93323 0.90583 0.93245 0.92641 0.90699 0.93193 0.85591 0.87810 0.73368 0.87316 0.87432 0.97152 0.97272 0.92355 0.83228 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.21 71.99 0.66 -0.73 16 2 C -0.11 -1.26 3.65 30.60 0.11 -1.15 16 3 C -0.02 -0.29 0.63 -52.93 -0.03 -0.32 16 4 C -0.14 -2.08 7.93 71.98 0.57 -1.51 16 5 C -0.14 -1.83 7.93 71.98 0.57 -1.26 16 6 C -0.09 -1.77 4.76 -19.84 -0.09 -1.87 16 7 C -0.10 -2.54 8.70 22.25 0.19 -2.35 16 8 C -0.15 -4.41 8.66 22.39 0.19 -4.21 16 9 C 0.13 3.42 6.28 38.15 0.24 3.66 16 10 N -0.66 -17.73 5.34 -303.51 -1.62 -19.35 16 11 C 0.51 18.39 7.57 87.66 0.66 19.05 16 12 O -0.56 -24.99 13.68 -3.04 -0.04 -25.03 16 13 C -0.11 -4.22 5.64 29.85 0.17 -4.05 16 14 C 0.00 0.23 3.33 29.85 0.10 0.33 16 15 C -0.53 -30.38 9.66 25.60 0.25 -30.14 16 16 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 17 C 0.01 0.81 5.47 84.65 0.46 1.27 16 18 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 19 Si 0.94 46.95 27.47 68.60 1.88 48.84 16 20 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.26 -13.08 6.54 99.48 0.65 -12.43 16 23 C -0.14 -2.91 9.96 22.39 0.22 -2.68 16 24 C -0.10 -1.84 8.97 22.25 0.20 -1.64 16 25 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.06 0.52 6.43 -2.39 -0.02 0.51 16 27 H 0.06 0.51 6.43 -2.39 -0.02 0.49 16 28 H 0.07 0.72 7.51 -2.39 -0.02 0.70 16 29 H 0.06 0.74 7.51 -2.39 -0.02 0.72 16 30 H 0.05 0.79 7.38 -2.39 -0.02 0.78 16 31 H 0.08 0.87 6.43 -2.39 -0.02 0.85 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 35 H 0.05 0.73 7.38 -2.39 -0.02 0.71 16 36 H 0.13 2.82 7.09 -2.92 -0.02 2.80 16 37 H 0.10 3.74 6.43 -2.91 -0.02 3.73 16 38 H 0.43 7.93 8.82 -92.71 -0.82 7.12 16 39 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 40 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 41 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 42 H 0.01 0.46 7.53 -2.38 -0.02 0.44 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 45 H 0.15 1.92 5.88 -2.91 -0.02 1.90 16 Total: -1.00 -73.09 353.01 5.11 -67.98 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.11 Total: 13.86 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 4.48 Total: -27.60 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.32 Total: -78.05 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.03 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.88 Total: 48.84 kcal Total: -73.09 5.11 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360491547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.271 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds