Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.16566 * 2 1 4 4 C 1.51335 * 109.21281 * 240.65958 * 2 1 3 5 5 N 1.46055 * 113.61607 * 304.98847 * 4 2 1 6 6 C 1.46903 * 110.99981 * 166.34306 * 5 4 2 7 7 C 1.52998 * 109.47094 * 189.99823 * 6 5 4 8 8 C 1.53001 * 109.47362 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47319 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99935 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99811 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00291 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00092 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46891 * 59.99824 * 13 11 9 15 15 H 1.48490 * 109.47398 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46976 * 300.00340 * 13 11 9 17 17 C 1.47717 * 112.39295 * 291.26935 * 5 4 2 18 18 C 1.51588 * 108.44860 * 84.32130 * 17 5 4 19 19 C 1.38010 * 120.11920 * 112.01977 * 18 17 5 20 20 C 1.38387 * 119.67404 * 178.01592 * 19 18 17 21 21 C 1.38294 * 120.13188 * 0.02562 * 20 19 18 22 22 C 1.38208 * 120.19525 * 0.42360 * 21 20 19 23 23 C 1.38177 * 119.50320 * 291.16182 * 18 17 5 24 24 O 1.36171 * 119.80131 * 3.58135 * 23 18 17 25 25 H 1.08994 * 109.47429 * 300.66485 * 1 2 3 26 26 H 1.09002 * 109.46770 * 60.66628 * 1 2 3 27 27 H 1.09004 * 109.46941 * 180.66107 * 1 2 3 28 28 H 1.09003 * 109.47563 * 179.33502 * 3 2 1 29 29 H 1.09004 * 109.47242 * 299.33416 * 3 2 1 30 30 H 1.09003 * 109.47604 * 59.33213 * 3 2 1 31 31 H 1.09004 * 108.65586 * 66.05800 * 4 2 1 32 32 H 1.08994 * 108.65981 * 184.05316 * 4 2 1 33 33 H 1.08997 * 109.47732 * 310.00218 * 6 5 4 34 34 H 1.09006 * 109.46961 * 70.00111 * 6 5 4 35 35 H 1.08999 * 109.47577 * 300.00434 * 7 6 5 36 36 H 1.09004 * 109.47465 * 60.00504 * 7 6 5 37 37 H 1.08999 * 109.47064 * 300.00668 * 8 7 6 38 38 H 1.09006 * 109.46893 * 60.00166 * 8 7 6 39 39 H 0.97001 * 120.00091 * 179.97438 * 12 11 9 40 40 H 1.08997 * 110.01052 * 324.48212 * 17 5 4 41 41 H 1.09000 * 109.49804 * 203.85440 * 17 5 4 42 42 H 1.07991 * 120.16174 * 358.03763 * 19 18 17 43 43 H 1.07991 * 119.93288 * 180.02562 * 20 19 18 44 44 H 1.07997 * 119.90194 * 180.39375 * 21 20 19 45 45 H 1.08002 * 120.17305 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4452 0.0000 4 6 2.0280 -0.7002 -1.2457 5 7 1.4959 -2.0504 -1.4103 6 6 1.7446 -2.5524 -2.7684 7 6 0.9653 -3.8515 -2.9825 8 6 1.2247 -4.3747 -4.3967 9 6 0.4567 -5.6540 -4.6078 10 1 -0.1556 -6.0537 -3.8130 11 6 0.5348 -6.3136 -5.8160 12 7 1.2800 -5.8266 -6.7841 13 14 -0.4177 -7.8990 -6.0781 14 1 -1.8694 -7.6386 -5.9047 15 1 -0.1658 -8.4067 -7.4505 16 1 0.0253 -8.9122 -5.0869 17 6 2.0187 -2.9888 -0.3963 18 6 1.1724 -2.8631 0.8551 19 6 0.3580 -3.9058 1.2479 20 6 -0.3793 -3.7974 2.4139 21 6 -0.3004 -2.6494 3.1810 22 6 0.5080 -1.6015 2.7829 23 6 1.2369 -1.7055 1.6068 24 8 2.0013 -0.6628 1.1795 25 1 -0.3634 0.5241 0.8839 26 1 -0.3633 0.5035 -0.8959 27 1 -0.3633 -1.0276 0.0119 28 1 3.1222 1.4511 0.0119 29 1 1.6760 1.9537 -0.8959 30 1 1.6565 1.9605 0.8839 31 1 1.7470 -0.1063 -2.1155 32 1 3.1155 -0.7591 -1.2016 33 1 1.4186 -1.8091 -3.4959 34 1 2.8103 -2.7427 -2.8959 35 1 1.2913 -4.5949 -2.2550 36 1 -0.1004 -3.6613 -2.8550 37 1 0.8991 -3.6314 -5.1244 38 1 2.2905 -4.5651 -4.5238 39 1 1.3353 -6.2908 -7.6340 40 1 3.0552 -2.7457 -0.1623 41 1 1.9576 -4.0080 -0.7779 42 1 0.2967 -4.8020 0.6485 43 1 -1.0176 -4.6109 2.7255 44 1 -0.8726 -2.5713 4.0937 45 1 0.5691 -0.7050 3.3820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377547101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = -17.509878 kcal Electronic energy + Delta-G solvation = -23663.479008 eV Core-core repulsion = 20452.708335 eV Total energy + Delta-G solvation = -3210.770673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87211 -37.95884 -37.00343 -34.00151 -33.39275 -31.86203 -30.83071 -29.72808 -27.40386 -27.01041 -26.45466 -24.34701 -22.66993 -22.15208 -20.94844 -20.22517 -19.65920 -17.33272 -16.51337 -16.16230 -15.94084 -15.57783 -15.11788 -14.72296 -14.59609 -14.25437 -14.00298 -13.83354 -13.47239 -12.88715 -12.69527 -12.51934 -12.30698 -12.07046 -12.00634 -11.86714 -11.79117 -11.67037 -11.45124 -11.21166 -10.94412 -10.82896 -10.76275 -10.54567 -10.50358 -9.95763 -9.61136 -9.32542 -9.06543 -8.81913 -8.43281 -8.33491 -8.07135 -5.99071 -4.01220 1.23905 1.36895 3.33962 3.35545 3.38274 3.40810 3.79148 4.20746 4.47505 4.73098 4.84957 4.88053 4.88293 4.93029 5.04410 5.26346 5.33328 5.36855 5.39439 5.44818 5.51806 5.54931 5.61169 5.69991 5.75747 5.80014 5.88388 5.95909 5.98540 6.01447 6.03507 6.27212 6.28719 6.37871 6.49508 6.61183 6.70106 6.74097 6.78117 7.09659 7.28800 7.36572 7.55465 7.68420 7.83054 8.01029 8.44165 9.05640 9.62782 11.12355 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019248 B = 0.003947 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.324451 B = 7092.840547 C = 8189.554320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 C -0.140 4.140 4 C 0.040 3.960 5 N -0.539 5.539 6 C 0.060 3.940 7 C -0.105 4.105 8 C 0.022 3.978 9 C -0.518 4.518 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.089 3.911 18 C -0.096 4.096 19 C -0.090 4.090 20 C -0.131 4.131 21 C -0.112 4.112 22 C -0.138 4.138 23 C 0.112 3.888 24 O -0.327 6.327 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.015 0.985 38 H 0.013 0.987 39 H 0.261 0.739 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 12.093 18.062 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.083 3.917 3 C -0.197 4.197 4 C -0.088 4.088 5 N -0.263 5.263 6 C -0.066 4.066 7 C -0.142 4.142 8 C -0.015 4.015 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.038 4.038 18 C -0.097 4.097 19 C -0.109 4.109 20 C -0.149 4.149 21 C -0.130 4.130 22 C -0.156 4.156 23 C 0.068 3.932 24 O -0.245 6.245 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.570 12.180 17.981 21.725 hybrid contribution 0.236 -0.992 -0.494 1.133 sum -0.334 11.188 17.486 20.762 Atomic orbital electron populations 1.22388 0.94141 1.04207 1.01926 1.21528 0.94720 0.91820 0.83658 1.21821 1.02088 0.93010 1.02807 1.22103 0.97615 0.91214 0.97893 1.61422 1.59999 1.00884 1.03975 1.22297 0.98501 0.98836 0.86992 1.21698 0.99161 0.93151 1.00235 1.19068 0.96862 0.95726 0.89877 1.21198 1.28038 1.07861 0.98585 0.92752 1.25016 0.95538 0.97721 0.96147 1.69954 1.39652 1.39672 1.04340 0.86669 0.80501 0.83762 0.77141 1.20227 1.21317 1.20265 1.21460 0.94957 0.98334 0.89066 1.20281 0.98567 0.94038 0.96830 1.21029 0.95237 0.98443 0.96187 1.21164 1.00264 0.98133 0.95357 1.20968 0.98791 0.93420 0.99805 1.21139 0.96674 0.99888 0.97934 1.18346 0.93336 0.87466 0.94023 1.86328 1.49190 1.44425 1.44547 0.92709 0.91428 0.90207 0.91755 0.90651 0.91570 0.89871 0.94627 0.91025 0.95194 0.93404 0.92533 0.96617 0.96823 0.92985 0.93119 0.88774 0.85319 0.85955 0.85993 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 7.52 37.16 0.28 -1.75 16 2 C 0.12 1.45 1.08 -91.46 -0.10 1.35 16 3 C -0.14 -1.30 8.77 37.16 0.33 -0.98 16 4 C 0.04 0.53 3.92 -5.12 -0.02 0.51 16 5 N -0.54 -8.24 3.69 -236.59 -0.87 -9.11 16 6 C 0.06 1.04 4.95 -3.82 -0.02 1.02 16 7 C -0.10 -2.14 5.11 -26.73 -0.14 -2.28 16 8 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 10 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.09 1.33 5.11 -4.09 -0.02 1.31 16 18 C -0.10 -1.36 4.62 -104.29 -0.48 -1.84 16 19 C -0.09 -1.18 9.70 -39.61 -0.38 -1.56 16 20 C -0.13 -1.48 10.05 -39.51 -0.40 -1.87 16 21 C -0.11 -1.18 10.04 -39.57 -0.40 -1.58 16 22 C -0.14 -1.63 9.96 -39.40 -0.39 -2.02 16 23 C 0.11 1.53 4.02 -39.41 -0.16 1.37 16 24 O -0.33 -4.53 9.64 -20.28 -0.20 -4.72 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.14 5.96 -51.93 -0.31 0.83 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.02 7.75 -51.93 -0.40 0.61 16 32 H 0.04 0.48 7.91 -51.93 -0.41 0.07 16 33 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.96 6.16 -51.93 -0.32 0.64 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 41 H 0.09 1.46 5.51 -51.93 -0.29 1.18 16 42 H 0.13 1.62 7.99 -52.49 -0.42 1.20 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -30.60 352.25 -10.07 -40.67 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.57 Total: -1.21 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -2.45 Total: -21.34 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.14 Total: -35.38 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.20 Total: -4.72 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.60 -10.07 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377547101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.158 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds