Wall clock time and date at job start Tue Mar 31 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.16566 * 2 1 4 4 C 1.51335 * 109.21281 * 240.65958 * 2 1 3 5 5 N 1.46055 * 113.61607 * 304.98847 * 4 2 1 6 6 C 1.46903 * 110.99981 * 166.34306 * 5 4 2 7 7 C 1.52998 * 109.47094 * 189.99823 * 6 5 4 8 8 C 1.53001 * 109.47362 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47319 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99935 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99811 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00291 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00092 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46891 * 59.99824 * 13 11 9 15 15 H 1.48490 * 109.47398 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46976 * 300.00340 * 13 11 9 17 17 C 1.47717 * 112.39295 * 291.26935 * 5 4 2 18 18 C 1.51588 * 108.44860 * 84.32130 * 17 5 4 19 19 C 1.38010 * 120.11920 * 112.01977 * 18 17 5 20 20 C 1.38387 * 119.67404 * 178.01592 * 19 18 17 21 21 C 1.38294 * 120.13188 * 0.02562 * 20 19 18 22 22 C 1.38208 * 120.19525 * 0.42360 * 21 20 19 23 23 C 1.38177 * 119.50320 * 291.16182 * 18 17 5 24 24 O 1.36171 * 119.80131 * 3.58135 * 23 18 17 25 25 H 1.08994 * 109.47429 * 300.66485 * 1 2 3 26 26 H 1.09002 * 109.46770 * 60.66628 * 1 2 3 27 27 H 1.09004 * 109.46941 * 180.66107 * 1 2 3 28 28 H 1.09003 * 109.47563 * 179.33502 * 3 2 1 29 29 H 1.09004 * 109.47242 * 299.33416 * 3 2 1 30 30 H 1.09003 * 109.47604 * 59.33213 * 3 2 1 31 31 H 1.09004 * 108.65586 * 66.05800 * 4 2 1 32 32 H 1.08994 * 108.65981 * 184.05316 * 4 2 1 33 33 H 1.08997 * 109.47732 * 310.00218 * 6 5 4 34 34 H 1.09006 * 109.46961 * 70.00111 * 6 5 4 35 35 H 1.08999 * 109.47577 * 300.00434 * 7 6 5 36 36 H 1.09004 * 109.47465 * 60.00504 * 7 6 5 37 37 H 1.08999 * 109.47064 * 300.00668 * 8 7 6 38 38 H 1.09006 * 109.46893 * 60.00166 * 8 7 6 39 39 H 0.97001 * 120.00091 * 179.97438 * 12 11 9 40 40 H 1.08997 * 110.01052 * 324.48212 * 17 5 4 41 41 H 1.09000 * 109.49804 * 203.85440 * 17 5 4 42 42 H 1.07991 * 120.16174 * 358.03763 * 19 18 17 43 43 H 1.07991 * 119.93288 * 180.02562 * 20 19 18 44 44 H 1.07997 * 119.90194 * 180.39375 * 21 20 19 45 45 H 1.08002 * 120.17305 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4452 0.0000 4 6 2.0280 -0.7002 -1.2457 5 7 1.4959 -2.0504 -1.4103 6 6 1.7446 -2.5524 -2.7684 7 6 0.9653 -3.8515 -2.9825 8 6 1.2247 -4.3747 -4.3967 9 6 0.4567 -5.6540 -4.6078 10 1 -0.1556 -6.0537 -3.8130 11 6 0.5348 -6.3136 -5.8160 12 7 1.2800 -5.8266 -6.7841 13 14 -0.4177 -7.8990 -6.0781 14 1 -1.8694 -7.6386 -5.9047 15 1 -0.1658 -8.4067 -7.4505 16 1 0.0253 -8.9122 -5.0869 17 6 2.0187 -2.9888 -0.3963 18 6 1.1724 -2.8631 0.8551 19 6 0.3580 -3.9058 1.2479 20 6 -0.3793 -3.7974 2.4139 21 6 -0.3004 -2.6494 3.1810 22 6 0.5080 -1.6015 2.7829 23 6 1.2369 -1.7055 1.6068 24 8 2.0013 -0.6628 1.1795 25 1 -0.3634 0.5241 0.8839 26 1 -0.3633 0.5035 -0.8959 27 1 -0.3633 -1.0276 0.0119 28 1 3.1222 1.4511 0.0119 29 1 1.6760 1.9537 -0.8959 30 1 1.6565 1.9605 0.8839 31 1 1.7470 -0.1063 -2.1155 32 1 3.1155 -0.7591 -1.2016 33 1 1.4186 -1.8091 -3.4959 34 1 2.8103 -2.7427 -2.8959 35 1 1.2913 -4.5949 -2.2550 36 1 -0.1004 -3.6613 -2.8550 37 1 0.8991 -3.6314 -5.1244 38 1 2.2905 -4.5651 -4.5238 39 1 1.3353 -6.2908 -7.6340 40 1 3.0552 -2.7457 -0.1623 41 1 1.9576 -4.0080 -0.7779 42 1 0.2967 -4.8020 0.6485 43 1 -1.0176 -4.6109 2.7255 44 1 -0.8726 -2.5713 4.0937 45 1 0.5691 -0.7050 3.3820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377547101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:59 Heat of formation + Delta-G solvation = -33.921139 kcal Electronic energy + Delta-G solvation = -23664.190653 eV Core-core repulsion = 20452.708335 eV Total energy + Delta-G solvation = -3211.482319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86921 -38.92356 -38.25395 -35.72185 -34.61605 -33.44311 -32.14553 -30.70857 -28.70471 -28.25346 -27.54934 -25.90571 -23.81888 -23.42502 -22.29731 -21.49310 -20.88004 -18.49004 -18.30678 -17.40654 -17.00878 -16.62695 -16.53467 -16.14327 -15.80744 -15.64211 -15.30703 -14.90528 -14.52823 -14.29919 -13.86877 -13.75736 -13.60256 -13.28097 -13.13791 -12.98153 -12.94451 -12.80400 -12.72273 -12.58774 -12.51649 -12.42484 -12.19024 -11.90154 -11.73208 -11.42828 -11.39125 -11.16400 -10.83011 -10.54140 -9.77008 -9.41972 -9.27287 -8.19847 -6.30710 0.30641 0.43166 1.40002 1.42959 1.50876 2.40492 2.43836 2.71720 3.13465 3.16690 3.75036 3.82364 3.86113 3.93516 3.99191 4.16397 4.22358 4.27398 4.34577 4.39065 4.51981 4.56567 4.59719 4.65581 4.71591 4.71971 4.75329 4.87591 4.95035 4.98095 5.03130 5.08217 5.12106 5.20885 5.22768 5.34561 5.47695 5.51449 5.58975 5.65210 5.73325 5.85342 5.89066 5.98523 6.08960 6.26967 6.58561 6.85565 7.38464 8.91911 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019248 B = 0.003947 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.324451 B = 7092.840547 C = 8189.554320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.118 3.882 3 C -0.135 4.135 4 C 0.037 3.963 5 N -0.540 5.540 6 C 0.072 3.928 7 C -0.087 4.087 8 C 0.027 3.973 9 C -0.542 4.542 10 H 0.058 0.942 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.963 3.037 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.267 1.267 17 C 0.092 3.908 18 C -0.116 4.116 19 C -0.106 4.106 20 C -0.131 4.131 21 C -0.104 4.104 22 C -0.141 4.141 23 C 0.097 3.903 24 O -0.339 6.339 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.050 0.950 36 H 0.051 0.949 37 H -0.007 1.007 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 12.500 19.880 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.081 3.919 3 C -0.192 4.192 4 C -0.091 4.091 5 N -0.263 5.263 6 C -0.055 4.055 7 C -0.125 4.125 8 C -0.011 4.011 9 C -0.580 4.580 10 H 0.077 0.923 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.788 3.212 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.192 1.192 17 C -0.035 4.035 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.149 4.149 21 C -0.122 4.122 22 C -0.159 4.159 23 C 0.054 3.946 24 O -0.257 6.257 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.011 0.989 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.142 0.858 43 H 0.164 0.836 44 H 0.173 0.827 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.905 12.597 19.821 23.562 hybrid contribution 0.661 -1.100 -1.026 1.643 sum -1.244 11.497 18.795 22.068 Atomic orbital electron populations 1.22309 0.93982 1.02832 1.02858 1.21681 0.94872 0.92873 0.82495 1.21830 1.02131 0.91121 1.04156 1.22235 0.97342 0.90113 0.99390 1.61393 1.60327 1.01934 1.02671 1.22029 0.97510 0.97329 0.88674 1.21412 0.99270 0.94809 0.96980 1.18958 0.94935 0.94775 0.92395 1.21636 1.28410 1.08910 0.99023 0.92328 1.25956 0.96461 1.01488 0.95781 1.70087 1.41055 1.41373 1.04880 0.85528 0.79228 0.79175 0.77304 1.19170 1.20795 1.19185 1.21386 0.95020 0.97464 0.89636 1.20248 0.99543 0.95125 0.96782 1.21145 0.95873 0.98216 0.97277 1.21463 0.99799 0.99172 0.94483 1.21356 0.98007 0.92400 1.00447 1.21402 0.96237 1.00985 0.97267 1.18543 0.94026 0.87251 0.94814 1.86317 1.49852 1.44506 1.45026 0.91554 0.90657 0.92657 0.91738 0.88977 0.90547 0.88777 0.95108 0.90708 0.95690 0.93181 0.93025 0.98866 0.99176 0.92777 0.93808 0.90060 0.85755 0.83645 0.82733 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 7.52 71.98 0.54 -3.12 16 2 C 0.12 2.70 1.08 -11.34 -0.01 2.69 16 3 C -0.13 -2.23 8.77 71.98 0.63 -1.60 16 4 C 0.04 0.97 3.92 85.92 0.34 1.31 16 5 N -0.54 -16.68 3.69 -902.42 -3.33 -20.01 16 6 C 0.07 2.54 4.95 86.30 0.43 2.96 16 7 C -0.09 -3.67 5.11 30.59 0.16 -3.51 16 8 C 0.03 1.44 4.97 29.85 0.15 1.59 16 9 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 10 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 11 C 0.00 0.05 5.46 84.65 0.46 0.51 16 12 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 13 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 C 0.09 2.84 5.11 85.68 0.44 3.28 16 18 C -0.12 -3.29 4.62 -19.65 -0.09 -3.38 16 19 C -0.11 -2.75 9.70 22.25 0.22 -2.54 16 20 C -0.13 -2.70 10.05 22.32 0.22 -2.47 16 21 C -0.10 -1.91 10.04 22.28 0.22 -1.69 16 22 C -0.14 -3.01 9.96 22.39 0.22 -2.79 16 23 C 0.10 2.57 4.02 22.38 0.09 2.66 16 24 O -0.34 -9.06 9.64 -95.49 -0.92 -9.99 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.54 5.96 -2.39 -0.01 1.52 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 2.21 7.75 -2.38 -0.02 2.19 16 32 H 0.03 0.83 7.91 -2.39 -0.02 0.81 16 33 H 0.07 2.58 7.84 -2.39 -0.02 2.56 16 34 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.05 2.08 6.16 -2.39 -0.01 2.06 16 36 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.04 1.37 7.79 -2.39 -0.02 1.36 16 41 H 0.08 2.65 5.51 -2.39 -0.01 2.64 16 42 H 0.12 3.19 7.99 -2.92 -0.02 3.17 16 43 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 44 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -66.45 352.25 3.25 -63.19 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.94 Total: 14.30 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 4.25 Total: -37.08 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -3.04 Total: -76.99 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.92 Total: -9.99 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.45 3.25 -63.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377547101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.272 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds