Wall clock time and date at job start Tue Mar 31 2020 05:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00039 * 2 1 4 4 C 1.52996 * 109.46734 * 179.97438 * 3 2 1 5 5 C 1.52995 * 110.29288 * 299.32611 * 4 3 2 6 6 C 1.54261 * 110.32686 * 61.45706 * 4 3 2 7 7 C 1.54370 * 105.06438 * 118.99346 * 6 4 3 8 8 N 1.48555 * 104.59585 * 23.85385 * 7 6 4 9 9 C 1.46906 * 111.00076 * 200.95770 * 8 7 6 10 10 C 1.50707 * 109.46697 * 69.87525 * 9 8 7 11 11 C 1.38625 * 119.74971 * 269.72366 * 10 9 8 12 12 C 1.37617 * 120.25204 * 179.77135 * 11 10 9 13 13 C 1.40719 * 119.74098 * 0.47961 * 12 11 10 14 14 C 1.41397 * 120.24426 * 179.79582 * 13 12 11 15 15 H 1.08000 * 119.99759 * 150.21275 * 14 13 12 16 16 C 1.39947 * 119.99935 * 330.20849 * 14 13 12 17 17 N 1.30817 * 119.99841 * 161.73834 * 16 14 13 18 18 Si 1.86805 * 119.99806 * 341.73241 * 16 14 13 19 19 H 1.48505 * 109.46936 * 95.41476 * 18 16 14 20 20 H 1.48496 * 109.46829 * 215.41107 * 18 16 14 21 21 H 1.48496 * 109.47158 * 335.41550 * 18 16 14 22 22 C 1.40717 * 119.51109 * 359.77203 * 13 12 11 23 23 C 1.37616 * 119.74598 * 359.97438 * 22 13 12 24 24 C 1.48560 * 104.22188 * 320.51434 * 8 7 6 25 25 H 1.08999 * 109.47563 * 300.00298 * 1 2 3 26 26 H 1.09000 * 109.47046 * 59.99903 * 1 2 3 27 27 H 1.09002 * 109.47668 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46950 * 60.00055 * 3 2 1 29 29 H 1.08998 * 109.46980 * 299.99939 * 3 2 1 30 30 H 1.08996 * 109.47678 * 180.67570 * 5 4 3 31 31 H 1.09008 * 109.46891 * 300.67751 * 5 4 3 32 32 H 1.09002 * 109.47183 * 60.67094 * 5 4 3 33 33 H 1.09009 * 110.32027 * 0.09511 * 6 4 3 34 34 H 1.08999 * 110.32132 * 237.89643 * 6 4 3 35 35 H 1.09004 * 110.41152 * 142.63635 * 7 6 4 36 36 H 1.09002 * 110.41621 * 265.07499 * 7 6 4 37 37 H 1.09004 * 109.46729 * 189.87034 * 9 8 7 38 38 H 1.08994 * 109.46935 * 309.87720 * 9 8 7 39 39 H 1.08006 * 119.87659 * 0.02562 * 11 10 9 40 40 H 1.07994 * 120.13420 * 180.23685 * 12 11 10 41 41 H 0.97005 * 119.99535 * 180.02562 * 17 16 14 42 42 H 1.08005 * 120.12765 * 179.97438 * 22 13 12 43 43 H 1.08001 * 119.87512 * 179.97438 * 23 22 13 44 44 H 1.08995 * 110.41348 * 280.70408 * 24 8 7 45 45 H 1.09001 * 110.51129 * 158.30675 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.0083 0.4422 1.2521 6 6 4.0155 0.4529 -1.2698 7 6 4.9160 1.4704 -2.0026 8 7 5.3793 2.3958 -0.9369 9 6 5.8219 3.6755 -1.5068 10 6 4.6281 4.4320 -2.0300 11 6 4.2242 4.2559 -3.3443 12 6 3.1326 4.9379 -3.8315 13 6 2.4320 5.8243 -2.9927 14 6 1.3117 6.5338 -3.4835 15 1 0.5126 6.8122 -2.8124 16 6 1.2384 6.8752 -4.8387 17 7 0.0879 7.1995 -5.3702 18 14 2.7836 6.8681 -5.8885 19 1 2.8953 5.5672 -6.5960 20 1 2.7110 7.9680 -6.8835 21 1 3.9726 7.0632 -5.0206 22 6 2.8543 5.9992 -1.6618 23 6 3.9454 5.3027 -1.1946 24 6 4.1863 2.5826 -0.0716 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 5.0961 0.3742 1.2449 31 1 3.6840 0.9843 2.1404 32 1 3.5816 -0.5608 1.2626 33 1 3.1646 0.1814 -1.8946 34 1 4.5879 -0.4351 -1.0017 35 1 5.7650 0.9645 -2.4625 36 1 4.3428 2.0129 -2.7545 37 1 6.3161 4.2654 -0.7347 38 1 6.5194 3.4878 -2.3230 39 1 4.7656 3.5778 -3.9873 40 1 2.8173 4.7963 -4.8546 41 1 0.0371 7.4358 -6.3097 42 1 2.3241 6.6773 -1.0095 43 1 4.2715 5.4356 -0.1736 44 1 3.4990 3.2992 -0.5212 45 1 4.4841 2.9151 0.9229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398977953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:04 Heat of formation + Delta-G solvation = -29.655081 kcal Electronic energy + Delta-G solvation = -23888.776302 eV Core-core repulsion = 20677.478974 eV Total energy + Delta-G solvation = -3211.297328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.82138 -38.06724 -36.98569 -34.27463 -33.14950 -30.78595 -29.93085 -29.12333 -27.40948 -26.92977 -25.78322 -24.53990 -23.12004 -21.68772 -20.76314 -19.83794 -18.89928 -17.49053 -16.14768 -16.04761 -15.92023 -15.60776 -15.03750 -14.40221 -14.16170 -14.13564 -13.86448 -13.68323 -13.15806 -12.90371 -12.73016 -12.59901 -12.41895 -12.11967 -11.95184 -11.70491 -11.45842 -11.13681 -11.06127 -11.00510 -10.83319 -10.60281 -10.50448 -10.47651 -10.27916 -10.18163 -10.00793 -9.62832 -9.56435 -9.19817 -8.02968 -7.77179 -7.57890 -7.02404 -4.55768 2.47526 2.59968 3.05413 3.16240 3.26638 3.77232 3.92313 4.35523 4.56754 4.82757 4.92399 5.07349 5.29751 5.33864 5.37096 5.47087 5.51679 5.59648 5.65371 5.65917 5.70334 5.80888 5.82778 5.90971 6.00512 6.04796 6.06275 6.14543 6.20558 6.27055 6.31315 6.41039 6.45433 6.49472 6.53536 6.74372 6.82208 7.08889 7.15922 7.22036 7.35949 7.37557 7.52053 7.73027 7.80303 8.05095 8.28023 8.58010 8.72931 9.99880 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.005080 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.547633 B = 5510.601239 C = 6332.100351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.072 3.928 4 C -0.061 4.061 5 C -0.127 4.127 6 C -0.106 4.106 7 C 0.022 3.978 8 N -0.503 5.503 9 C 0.100 3.900 10 C -0.250 4.250 11 C -0.064 4.064 12 C -0.240 4.240 13 C 0.096 3.904 14 C -0.448 4.448 15 H 0.090 0.910 16 C 0.085 3.915 17 N -0.807 5.807 18 Si 0.912 3.088 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.244 1.244 22 C -0.211 4.211 23 C -0.069 4.069 24 C 0.032 3.968 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.286 0.714 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 -10.370 7.397 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.004 4.004 4 C -0.061 4.061 5 C -0.184 4.184 6 C -0.144 4.144 7 C -0.106 4.106 8 N -0.225 5.225 9 C -0.027 4.027 10 C -0.253 4.253 11 C -0.083 4.083 12 C -0.259 4.259 13 C 0.092 3.908 14 C -0.476 4.476 15 H 0.108 0.892 16 C -0.134 4.134 17 N -0.431 5.431 18 Si 0.739 3.261 19 H -0.197 1.197 20 H -0.218 1.218 21 H -0.167 1.167 22 C -0.231 4.231 23 C -0.087 4.087 24 C -0.096 4.096 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.449 -10.649 7.512 14.125 hybrid contribution -0.531 0.766 -1.149 1.479 sum 4.918 -9.883 6.363 12.742 Atomic orbital electron populations 1.22712 0.81425 1.02286 1.00133 1.87829 1.19247 1.28239 1.95431 1.22630 0.93135 0.84220 1.00458 1.21267 0.92220 0.96155 0.96506 1.21743 1.01058 0.99930 0.95691 1.22301 0.98821 0.97762 0.95531 1.23213 0.98070 0.94446 0.94906 1.65802 1.29907 1.11021 1.15820 1.20969 0.94847 0.88855 0.98033 1.19616 1.03272 1.07090 0.95281 1.20469 0.96001 0.97577 0.94283 1.21017 1.01510 1.03527 0.99848 1.17736 0.91027 0.90135 0.91854 1.19520 1.03459 1.30713 0.93907 0.89232 1.26163 0.97457 0.91703 0.98125 1.69695 1.25943 1.32840 1.14592 0.86296 0.83199 0.77518 0.79104 1.19719 1.21819 1.16744 1.21018 1.00045 1.04753 0.97234 1.20506 0.95708 0.95463 0.97069 1.23321 0.92699 0.95399 0.98141 0.94300 0.93959 0.89962 0.93443 0.92765 0.92196 0.93324 0.92408 0.91338 0.91469 0.91080 0.92337 0.91271 0.91616 0.89106 0.88374 0.90399 0.88291 0.88925 0.90594 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -5.37 9.67 -35.23 -0.34 -5.71 16 3 C 0.07 1.02 4.56 37.16 0.17 1.19 16 4 C -0.06 -0.84 0.83 -153.13 -0.13 -0.97 16 5 C -0.13 -1.56 8.08 37.16 0.30 -1.26 16 6 C -0.11 -1.48 6.08 -25.35 -0.15 -1.64 16 7 C 0.02 0.32 6.33 -2.19 -0.01 0.31 16 8 N -0.50 -7.74 5.65 -231.41 -1.31 -9.05 16 9 C 0.10 1.62 5.75 -4.97 -0.03 1.60 16 10 C -0.25 -4.79 3.86 -104.33 -0.40 -5.19 16 11 C -0.06 -1.34 8.00 -39.67 -0.32 -1.66 16 12 C -0.24 -5.63 7.18 -38.87 -0.28 -5.91 16 13 C 0.10 2.36 5.10 -106.82 -0.55 1.82 16 14 C -0.45 -11.91 9.57 -37.74 -0.36 -12.27 16 15 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 16 C 0.08 2.19 5.40 -17.34 -0.09 2.10 16 17 N -0.81 -21.27 13.93 55.55 0.77 -20.50 16 18 Si 0.91 20.69 24.52 -169.99 -4.17 16.52 16 19 H -0.27 -5.99 6.71 56.52 0.38 -5.61 16 20 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.24 -5.70 6.86 56.52 0.39 -5.31 16 22 C -0.21 -4.73 9.80 -38.87 -0.38 -5.11 16 23 C -0.07 -1.36 7.45 -39.66 -0.30 -1.65 16 24 C 0.03 0.49 5.07 -2.18 -0.01 0.48 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.06 0.71 7.78 -51.93 -0.40 0.30 16 33 H 0.07 0.99 7.53 -51.92 -0.39 0.60 16 34 H 0.07 0.87 7.71 -51.93 -0.40 0.47 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.98 5.24 -51.93 -0.27 0.71 16 37 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.07 1.02 8.02 -51.93 -0.42 0.61 16 39 H 0.09 1.71 7.52 -52.48 -0.39 1.31 16 40 H 0.10 2.34 4.73 -52.49 -0.25 2.09 16 41 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 42 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 43 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.08 1.33 4.47 -51.93 -0.23 1.09 16 45 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -26.52 345.05 -8.68 -35.20 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.41 Total: 5.05 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: -1.43 Total: -26.71 kcal Atomic # 7 Polarization: -29.01 SS G_CDS: -0.53 Total: -29.55 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.34 Total: -5.71 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.17 Total: 16.52 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.52 -8.68 -35.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398977953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.541 kcal (2) G-P(sol) polarization free energy of solvation -26.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds