Wall clock time and date at job start Tue Mar 31 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00039 * 2 1 4 4 C 1.52996 * 109.46734 * 179.97438 * 3 2 1 5 5 C 1.52995 * 110.29288 * 299.32611 * 4 3 2 6 6 C 1.54261 * 110.32686 * 61.45706 * 4 3 2 7 7 C 1.54370 * 105.06438 * 118.99346 * 6 4 3 8 8 N 1.48555 * 104.59585 * 23.85385 * 7 6 4 9 9 C 1.46906 * 111.00076 * 200.95770 * 8 7 6 10 10 C 1.50707 * 109.46697 * 69.87525 * 9 8 7 11 11 C 1.38625 * 119.74971 * 269.72366 * 10 9 8 12 12 C 1.37617 * 120.25204 * 179.77135 * 11 10 9 13 13 C 1.40719 * 119.74098 * 0.47961 * 12 11 10 14 14 C 1.41397 * 120.24426 * 179.79582 * 13 12 11 15 15 H 1.08000 * 119.99759 * 150.21275 * 14 13 12 16 16 C 1.39947 * 119.99935 * 330.20849 * 14 13 12 17 17 N 1.30817 * 119.99841 * 161.73834 * 16 14 13 18 18 Si 1.86805 * 119.99806 * 341.73241 * 16 14 13 19 19 H 1.48505 * 109.46936 * 95.41476 * 18 16 14 20 20 H 1.48496 * 109.46829 * 215.41107 * 18 16 14 21 21 H 1.48496 * 109.47158 * 335.41550 * 18 16 14 22 22 C 1.40717 * 119.51109 * 359.77203 * 13 12 11 23 23 C 1.37616 * 119.74598 * 359.97438 * 22 13 12 24 24 C 1.48560 * 104.22188 * 320.51434 * 8 7 6 25 25 H 1.08999 * 109.47563 * 300.00298 * 1 2 3 26 26 H 1.09000 * 109.47046 * 59.99903 * 1 2 3 27 27 H 1.09002 * 109.47668 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46950 * 60.00055 * 3 2 1 29 29 H 1.08998 * 109.46980 * 299.99939 * 3 2 1 30 30 H 1.08996 * 109.47678 * 180.67570 * 5 4 3 31 31 H 1.09008 * 109.46891 * 300.67751 * 5 4 3 32 32 H 1.09002 * 109.47183 * 60.67094 * 5 4 3 33 33 H 1.09009 * 110.32027 * 0.09511 * 6 4 3 34 34 H 1.08999 * 110.32132 * 237.89643 * 6 4 3 35 35 H 1.09004 * 110.41152 * 142.63635 * 7 6 4 36 36 H 1.09002 * 110.41621 * 265.07499 * 7 6 4 37 37 H 1.09004 * 109.46729 * 189.87034 * 9 8 7 38 38 H 1.08994 * 109.46935 * 309.87720 * 9 8 7 39 39 H 1.08006 * 119.87659 * 0.02562 * 11 10 9 40 40 H 1.07994 * 120.13420 * 180.23685 * 12 11 10 41 41 H 0.97005 * 119.99535 * 180.02562 * 17 16 14 42 42 H 1.08005 * 120.12765 * 179.97438 * 22 13 12 43 43 H 1.08001 * 119.87512 * 179.97438 * 23 22 13 44 44 H 1.08995 * 110.41348 * 280.70408 * 24 8 7 45 45 H 1.09001 * 110.51129 * 158.30675 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.0083 0.4422 1.2521 6 6 4.0155 0.4529 -1.2698 7 6 4.9160 1.4704 -2.0026 8 7 5.3793 2.3958 -0.9369 9 6 5.8219 3.6755 -1.5068 10 6 4.6281 4.4320 -2.0300 11 6 4.2242 4.2559 -3.3443 12 6 3.1326 4.9379 -3.8315 13 6 2.4320 5.8243 -2.9927 14 6 1.3117 6.5338 -3.4835 15 1 0.5126 6.8122 -2.8124 16 6 1.2384 6.8752 -4.8387 17 7 0.0879 7.1995 -5.3702 18 14 2.7836 6.8681 -5.8885 19 1 2.8953 5.5672 -6.5960 20 1 2.7110 7.9680 -6.8835 21 1 3.9726 7.0632 -5.0206 22 6 2.8543 5.9992 -1.6618 23 6 3.9454 5.3027 -1.1946 24 6 4.1863 2.5826 -0.0716 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 5.0961 0.3742 1.2449 31 1 3.6840 0.9843 2.1404 32 1 3.5816 -0.5608 1.2626 33 1 3.1646 0.1814 -1.8946 34 1 4.5879 -0.4351 -1.0017 35 1 5.7650 0.9645 -2.4625 36 1 4.3428 2.0129 -2.7545 37 1 6.3161 4.2654 -0.7347 38 1 6.5194 3.4878 -2.3230 39 1 4.7656 3.5778 -3.9873 40 1 2.8173 4.7963 -4.8546 41 1 0.0371 7.4358 -6.3097 42 1 2.3241 6.6773 -1.0095 43 1 4.2715 5.4356 -0.1736 44 1 3.4990 3.2992 -0.5212 45 1 4.4841 2.9151 0.9229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398977953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:03 Heat of formation + Delta-G solvation = -45.511766 kcal Electronic energy + Delta-G solvation = -23889.463900 eV Core-core repulsion = 20677.478974 eV Total energy + Delta-G solvation = -3211.984926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.11338 -39.52023 -38.25268 -35.87853 -34.68840 -32.33636 -31.63913 -30.47024 -28.51264 -28.18866 -27.02919 -25.87306 -24.49581 -23.39762 -22.25595 -21.33128 -20.04886 -19.37012 -17.59896 -17.20309 -17.16930 -16.85490 -16.48209 -15.91402 -15.66533 -15.44610 -15.35534 -15.04187 -14.70045 -14.21303 -14.15445 -13.90284 -13.77533 -13.67900 -13.30251 -13.09053 -12.72236 -12.54665 -12.48026 -12.31345 -12.23474 -12.08354 -12.01218 -11.78335 -11.58732 -11.57355 -11.40638 -11.31573 -11.02333 -10.63041 -9.52884 -9.35737 -9.31288 -8.94080 -6.52940 0.71905 0.83694 1.21902 1.35818 1.44385 2.07867 2.52972 2.74082 3.30043 3.48528 3.72081 3.79027 3.98071 4.14682 4.26070 4.30545 4.36912 4.38818 4.43400 4.49415 4.52643 4.57696 4.63176 4.66232 4.72373 4.81098 4.87236 4.89139 4.98253 5.00165 5.04194 5.04755 5.15557 5.21097 5.26341 5.29136 5.34715 5.48573 5.57736 5.71917 5.83772 5.90903 6.09465 6.14060 6.19477 6.22997 6.38732 6.71023 6.80850 8.14627 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.005080 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.547633 B = 5510.601239 C = 6332.100351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.076 3.924 4 C -0.060 4.060 5 C -0.119 4.119 6 C -0.103 4.103 7 C 0.020 3.980 8 N -0.495 5.495 9 C 0.102 3.898 10 C -0.222 4.222 11 C -0.070 4.070 12 C -0.252 4.252 13 C 0.075 3.925 14 C -0.488 4.488 15 H 0.054 0.946 16 C 0.049 3.951 17 N -0.851 5.851 18 Si 0.965 3.035 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.254 1.254 22 C -0.222 4.222 23 C -0.063 4.063 24 C 0.033 3.967 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.104 0.896 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.293 0.707 42 H 0.099 0.901 43 H 0.124 0.876 44 H 0.050 0.950 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 -12.293 8.640 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.001 4.001 4 C -0.061 4.061 5 C -0.176 4.176 6 C -0.141 4.141 7 C -0.108 4.108 8 N -0.216 5.216 9 C -0.026 4.026 10 C -0.224 4.224 11 C -0.089 4.089 12 C -0.271 4.271 13 C 0.072 3.928 14 C -0.517 4.517 15 H 0.073 0.927 16 C -0.165 4.165 17 N -0.477 5.477 18 Si 0.789 3.211 19 H -0.187 1.187 20 H -0.204 1.204 21 H -0.177 1.177 22 C -0.242 4.242 23 C -0.081 4.081 24 C -0.095 4.095 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.122 0.878 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.142 0.858 44 H 0.068 0.932 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.454 -12.582 8.763 17.509 hybrid contribution -1.371 1.194 -1.321 2.247 sum 7.083 -11.388 7.442 15.337 Atomic orbital electron populations 1.22898 0.80138 1.03816 1.00254 1.87804 1.20689 1.27843 1.95436 1.22539 0.93690 0.84382 0.99493 1.21273 0.91762 0.95654 0.97386 1.21669 1.01247 0.99740 0.94961 1.22280 0.98454 0.98084 0.95312 1.23262 0.98619 0.94454 0.94424 1.65837 1.29835 1.10308 1.15662 1.21086 0.93472 0.88929 0.99108 1.20122 1.03066 1.04952 0.94300 1.20782 0.95307 0.97328 0.95443 1.21094 1.02479 1.03939 0.99594 1.17862 0.91110 0.90589 0.93203 1.19491 1.04185 1.33733 0.94328 0.92744 1.26783 0.99752 0.91247 0.98750 1.69725 1.27317 1.35272 1.15399 0.85486 0.79578 0.78228 0.77785 1.18712 1.20399 1.17724 1.21200 1.01026 1.05379 0.96546 1.20818 0.94325 0.94386 0.98595 1.23313 0.92115 0.95571 0.98512 0.93264 0.94773 0.87785 0.92797 0.95394 0.91697 0.92509 0.92356 0.92445 0.90088 0.89294 0.94360 0.89506 0.90144 0.86652 0.89136 0.89650 0.88289 0.85788 0.93171 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.48 9.67 -148.98 -1.44 -11.92 16 3 C 0.08 2.07 4.56 71.98 0.33 2.40 16 4 C -0.06 -1.52 0.83 -51.29 -0.04 -1.56 16 5 C -0.12 -2.54 8.08 71.98 0.58 -1.96 16 6 C -0.10 -2.63 6.08 31.49 0.19 -2.44 16 7 C 0.02 0.54 6.33 86.45 0.55 1.09 16 8 N -0.49 -13.24 5.65 -886.03 -5.01 -18.25 16 9 C 0.10 2.84 5.75 85.56 0.49 3.33 16 10 C -0.22 -7.85 3.86 -19.67 -0.08 -7.92 16 11 C -0.07 -2.76 8.00 22.22 0.18 -2.58 16 12 C -0.25 -11.81 7.18 22.73 0.16 -11.65 16 13 C 0.07 3.80 5.10 -21.29 -0.11 3.69 16 14 C -0.49 -27.57 9.57 23.46 0.22 -27.34 16 15 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 16 C 0.05 2.66 5.40 85.26 0.46 3.12 16 17 N -0.85 -47.17 13.93 21.83 0.30 -46.86 16 18 Si 0.97 43.44 24.52 68.60 1.68 45.12 16 19 H -0.26 -11.21 6.71 99.48 0.67 -10.55 16 20 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.25 -11.62 6.86 99.48 0.68 -10.94 16 22 C -0.22 -9.99 9.80 22.73 0.22 -9.77 16 23 C -0.06 -2.34 7.45 22.22 0.17 -2.17 16 24 C 0.03 0.90 5.07 86.45 0.44 1.33 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.03 0.89 8.13 -2.39 -0.02 0.87 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 1.25 7.78 -2.39 -0.02 1.23 16 33 H 0.06 1.59 7.53 -2.38 -0.02 1.57 16 34 H 0.08 1.84 7.71 -2.39 -0.02 1.83 16 35 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.04 1.19 5.24 -2.39 -0.01 1.17 16 37 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 38 H 0.08 2.09 8.02 -2.39 -0.02 2.07 16 39 H 0.12 3.99 7.52 -2.91 -0.02 3.96 16 40 H 0.09 4.34 4.73 -2.91 -0.01 4.32 16 41 H 0.29 14.60 8.30 -92.70 -0.77 13.84 16 42 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.12 3.88 8.06 -2.91 -0.02 3.85 16 44 H 0.05 1.64 4.47 -2.39 -0.01 1.63 16 45 H 0.09 2.15 7.86 -2.39 -0.02 2.13 16 Total: -1.00 -59.03 345.05 1.44 -57.59 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.89 Total: 24.98 kcal Atomic # 6 Polarization: -55.67 SS G_CDS: 5.01 Total: -50.65 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -4.70 Total: -65.11 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -1.44 Total: -11.92 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.68 Total: 45.12 kcal Total: -59.03 1.44 -57.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398977953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.075 kcal (2) G-P(sol) polarization free energy of solvation -59.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds