Wall clock time and date at job start Tue Mar 31 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00171 * 2 1 4 4 C 1.52996 * 109.47260 * 179.97438 * 3 2 1 5 5 C 1.52998 * 110.27481 * 57.91012 * 4 3 2 6 6 C 1.54595 * 110.30943 * 295.71806 * 4 3 2 7 7 C 1.54939 * 102.92190 * 219.12319 * 6 4 3 8 8 N 1.48530 * 103.22557 * 37.41761 * 7 6 4 9 9 C 1.46901 * 111.00308 * 200.27767 * 8 7 6 10 10 C 1.50702 * 109.46675 * 307.39618 * 9 8 7 11 11 C 1.38639 * 119.74952 * 269.71890 * 10 9 8 12 12 C 1.37613 * 120.24941 * 179.76617 * 11 10 9 13 13 C 1.40722 * 119.74405 * 0.49006 * 12 11 10 14 14 C 1.41395 * 120.24403 * 179.78811 * 13 12 11 15 15 H 1.08002 * 119.99964 * 204.37687 * 14 13 12 16 16 C 1.39947 * 119.99797 * 24.37545 * 14 13 12 17 17 N 1.30822 * 120.00110 * 17.87069 * 16 14 13 18 18 Si 1.86806 * 119.99786 * 197.86839 * 16 14 13 19 19 H 1.48498 * 109.46899 * 90.00126 * 18 16 14 20 20 H 1.48508 * 109.46842 * 210.00295 * 18 16 14 21 21 H 1.48500 * 109.47131 * 329.99972 * 18 16 14 22 22 C 1.40715 * 119.51117 * 359.76902 * 13 12 11 23 23 C 1.37614 * 119.74293 * 359.97438 * 22 13 12 24 24 C 1.47900 * 105.82196 * 320.79117 * 8 7 6 25 25 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47062 * 299.99855 * 1 2 3 27 27 H 1.09006 * 109.46556 * 59.99891 * 1 2 3 28 28 H 1.08997 * 109.47134 * 300.00315 * 3 2 1 29 29 H 1.08998 * 109.46760 * 60.00152 * 3 2 1 30 30 H 1.09007 * 109.46931 * 60.70380 * 5 4 3 31 31 H 1.09005 * 109.47464 * 180.69799 * 5 4 3 32 32 H 1.08991 * 109.47344 * 300.70383 * 5 4 3 33 33 H 1.08999 * 110.72954 * 337.48465 * 6 4 3 34 34 H 1.09005 * 110.72653 * 100.76791 * 6 4 3 35 35 H 1.08995 * 110.67275 * 278.98276 * 7 6 4 36 36 H 1.09001 * 110.66669 * 155.84794 * 7 6 4 37 37 H 1.09002 * 109.46990 * 67.39036 * 9 8 7 38 38 H 1.08994 * 109.47448 * 187.39602 * 9 8 7 39 39 H 1.08007 * 119.87261 * 0.02562 * 11 10 9 40 40 H 1.08000 * 120.12671 * 180.28041 * 12 11 10 41 41 H 0.97003 * 120.00006 * 179.97438 * 17 16 14 42 42 H 1.07995 * 120.12831 * 179.97438 * 22 13 12 43 43 H 1.08005 * 119.87737 * 180.02562 * 23 22 13 44 44 H 1.08996 * 109.91850 * 265.97929 * 24 8 7 45 45 H 1.09003 * 110.08938 * 144.77334 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0043 0.3825 -1.2149 6 6 4.0201 0.5153 1.3072 7 6 5.3058 1.3103 1.6475 8 7 4.9604 2.7000 1.2530 9 6 6.1716 3.5051 1.0464 10 6 7.0570 3.4014 2.2615 11 6 6.9132 4.3119 3.2972 12 6 7.7129 4.2238 4.4136 13 6 8.6863 3.2110 4.4971 14 6 9.5167 3.1135 5.6373 15 1 10.4818 2.6344 5.5631 16 6 9.0880 3.6378 6.8620 17 7 7.8202 3.8964 7.0549 18 14 10.3261 3.9682 8.2212 19 1 10.8445 5.3538 8.0924 20 1 9.6660 3.8073 9.5418 21 1 11.4518 3.0061 8.1101 22 6 8.8269 2.2958 3.4375 23 6 8.0126 2.3996 2.3330 24 6 4.1823 2.5822 0.0008 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.6886 1.8464 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 3.6982 0.8939 -2.1277 31 1 5.0905 0.2939 -1.1949 32 1 3.5581 -0.6115 -1.1883 33 1 3.2771 0.6273 2.0967 34 1 4.2504 -0.5368 1.1393 35 1 6.1505 0.9436 1.0644 36 1 5.5208 1.2555 2.7146 37 1 6.7088 3.1357 0.1729 38 1 5.8929 4.5468 0.8878 39 1 6.1680 5.0906 3.2292 40 1 7.5962 4.9314 5.2212 41 1 7.5229 4.2594 7.9040 42 1 9.5710 1.5148 3.4909 43 1 8.1184 1.6981 1.5187 44 1 4.8445 2.6848 -0.8589 45 1 3.4087 3.3494 -0.0330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398977955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:07 Heat of formation + Delta-G solvation = -32.696400 kcal Electronic energy + Delta-G solvation = -22965.860855 eV Core-core repulsion = 19754.431645 eV Total energy + Delta-G solvation = -3211.429210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.66830 -37.88964 -37.06014 -34.27243 -33.02904 -30.30628 -29.36332 -29.20156 -27.54970 -27.00383 -25.84491 -24.26033 -23.30860 -21.14058 -20.77095 -19.69381 -18.96333 -17.27155 -16.49423 -15.99127 -15.78609 -15.35071 -15.04060 -14.59374 -14.16897 -14.09152 -13.61886 -13.46155 -13.24797 -12.76307 -12.58898 -12.49358 -12.13302 -11.91465 -11.70573 -11.63648 -11.54638 -11.44517 -11.18303 -11.01747 -10.80789 -10.74496 -10.45286 -10.42575 -10.36053 -10.29150 -9.74540 -9.52510 -9.33804 -9.10303 -7.98017 -7.41091 -7.25599 -6.73659 -4.32585 2.76386 3.07979 3.10711 3.11713 3.19746 3.62687 3.94529 4.40893 4.66750 4.70315 4.73073 4.98566 5.11399 5.17754 5.31253 5.36988 5.47016 5.49611 5.53355 5.60431 5.65578 5.75061 5.81148 5.89020 5.94803 6.01947 6.10151 6.15574 6.27360 6.30771 6.39191 6.43212 6.49473 6.56674 6.98627 7.04168 7.09342 7.29931 7.32663 7.41037 7.52499 7.64644 7.90430 8.08351 8.17762 8.32981 8.67522 8.92215 9.00778 10.20587 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028933 B = 0.003130 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.530471 B = 8943.000734 C = 9270.755656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.078 3.922 4 C -0.070 4.070 5 C -0.133 4.133 6 C -0.108 4.108 7 C 0.046 3.954 8 N -0.510 5.510 9 C 0.112 3.888 10 C -0.212 4.212 11 C -0.080 4.080 12 C -0.168 4.168 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.791 5.791 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.227 4.227 23 C -0.083 4.083 24 C 0.044 3.956 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.087 0.913 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.280 0.720 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 -3.803 -11.632 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.001 3.999 4 C -0.071 4.071 5 C -0.190 4.190 6 C -0.146 4.146 7 C -0.082 4.082 8 N -0.234 5.234 9 C -0.015 4.015 10 C -0.214 4.214 11 C -0.099 4.099 12 C -0.187 4.187 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.416 5.416 18 Si 0.731 3.269 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.247 4.247 23 C -0.101 4.101 24 C -0.084 4.084 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.782 -3.614 -11.050 15.856 hybrid contribution 0.699 0.042 0.065 0.703 sum -10.083 -3.571 -10.985 15.333 Atomic orbital electron populations 1.22708 0.81492 1.02479 0.99806 1.87876 1.19170 1.28163 1.95367 1.22616 0.92929 0.84316 1.00032 1.21425 0.92907 0.95836 0.96891 1.21803 1.00762 1.00305 0.96120 1.22560 0.97639 0.98695 0.95718 1.23152 0.95340 0.87582 1.02088 1.64943 1.20033 1.11687 1.26709 1.20909 0.88453 0.96940 0.95187 1.18854 1.02454 1.02425 0.97645 1.20498 0.97948 0.97589 0.93834 1.21305 0.99737 1.00270 0.97394 1.17620 0.90912 0.89024 0.91467 1.19599 1.03382 1.33304 0.93027 0.90541 1.25906 0.95349 0.93000 0.99922 1.69837 1.15001 1.31681 1.25100 0.86338 0.81272 0.79835 0.79413 1.19302 1.20342 1.18668 1.20922 1.04412 1.01998 0.97357 1.20350 0.96283 0.96717 0.96789 1.22912 0.97598 0.95308 0.92625 0.89854 0.94130 0.94403 0.93659 0.92751 0.93044 0.92770 0.91731 0.90939 0.91201 0.94104 0.89429 0.95820 0.91651 0.89490 0.86546 0.90904 0.89224 0.90033 0.93686 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.54 9.77 -35.23 -0.34 -4.88 16 3 C 0.08 0.88 4.50 37.16 0.17 1.05 16 4 C -0.07 -0.87 0.77 -153.15 -0.12 -0.99 16 5 C -0.13 -1.49 8.05 37.16 0.30 -1.19 16 6 C -0.11 -1.53 5.96 -24.87 -0.15 -1.68 16 7 C 0.05 0.77 4.96 -1.90 -0.01 0.76 16 8 N -0.51 -8.59 5.39 -231.89 -1.25 -9.84 16 9 C 0.11 2.01 5.18 -4.97 -0.03 1.99 16 10 C -0.21 -4.59 4.62 -104.33 -0.48 -5.08 16 11 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 12 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 13 C 0.11 3.01 5.58 -106.82 -0.60 2.41 16 14 C -0.46 -12.38 9.05 -37.74 -0.34 -12.73 16 15 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.63 10.95 55.55 0.61 -20.02 16 18 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 23 C -0.08 -1.83 8.30 -39.66 -0.33 -2.16 16 24 C 0.04 0.59 6.03 -2.75 -0.02 0.58 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 33 H 0.07 1.07 7.84 -51.93 -0.41 0.66 16 34 H 0.07 0.93 7.86 -51.93 -0.41 0.53 16 35 H 0.04 0.68 7.07 -51.93 -0.37 0.32 16 36 H 0.09 1.72 7.73 -51.93 -0.40 1.31 16 37 H 0.02 0.41 7.75 -51.93 -0.40 0.00 16 38 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 40 H 0.12 3.16 6.15 -52.49 -0.32 2.83 16 41 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 42 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 43 H 0.08 1.63 7.37 -52.48 -0.39 1.24 16 44 H 0.04 0.59 7.11 -51.93 -0.37 0.22 16 45 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -27.57 355.92 -9.97 -37.54 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.63 Total: 4.86 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -1.68 Total: -26.77 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: -0.64 Total: -29.86 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.34 Total: -4.88 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.57 -9.97 -37.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398977955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.842 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds