Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00171 * 2 1 4 4 C 1.52996 * 109.47260 * 179.97438 * 3 2 1 5 5 C 1.52998 * 110.27481 * 57.91012 * 4 3 2 6 6 C 1.54595 * 110.30943 * 295.71806 * 4 3 2 7 7 C 1.54939 * 102.92190 * 219.12319 * 6 4 3 8 8 N 1.48530 * 103.22557 * 37.41761 * 7 6 4 9 9 C 1.46901 * 111.00308 * 200.27767 * 8 7 6 10 10 C 1.50702 * 109.46675 * 307.39618 * 9 8 7 11 11 C 1.38639 * 119.74952 * 269.71890 * 10 9 8 12 12 C 1.37613 * 120.24941 * 179.76617 * 11 10 9 13 13 C 1.40722 * 119.74405 * 0.49006 * 12 11 10 14 14 C 1.41395 * 120.24403 * 179.78811 * 13 12 11 15 15 H 1.08002 * 119.99964 * 204.37687 * 14 13 12 16 16 C 1.39947 * 119.99797 * 24.37545 * 14 13 12 17 17 N 1.30822 * 120.00110 * 17.87069 * 16 14 13 18 18 Si 1.86806 * 119.99786 * 197.86839 * 16 14 13 19 19 H 1.48498 * 109.46899 * 90.00126 * 18 16 14 20 20 H 1.48508 * 109.46842 * 210.00295 * 18 16 14 21 21 H 1.48500 * 109.47131 * 329.99972 * 18 16 14 22 22 C 1.40715 * 119.51117 * 359.76902 * 13 12 11 23 23 C 1.37614 * 119.74293 * 359.97438 * 22 13 12 24 24 C 1.47900 * 105.82196 * 320.79117 * 8 7 6 25 25 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47062 * 299.99855 * 1 2 3 27 27 H 1.09006 * 109.46556 * 59.99891 * 1 2 3 28 28 H 1.08997 * 109.47134 * 300.00315 * 3 2 1 29 29 H 1.08998 * 109.46760 * 60.00152 * 3 2 1 30 30 H 1.09007 * 109.46931 * 60.70380 * 5 4 3 31 31 H 1.09005 * 109.47464 * 180.69799 * 5 4 3 32 32 H 1.08991 * 109.47344 * 300.70383 * 5 4 3 33 33 H 1.08999 * 110.72954 * 337.48465 * 6 4 3 34 34 H 1.09005 * 110.72653 * 100.76791 * 6 4 3 35 35 H 1.08995 * 110.67275 * 278.98276 * 7 6 4 36 36 H 1.09001 * 110.66669 * 155.84794 * 7 6 4 37 37 H 1.09002 * 109.46990 * 67.39036 * 9 8 7 38 38 H 1.08994 * 109.47448 * 187.39602 * 9 8 7 39 39 H 1.08007 * 119.87261 * 0.02562 * 11 10 9 40 40 H 1.08000 * 120.12671 * 180.28041 * 12 11 10 41 41 H 0.97003 * 120.00006 * 179.97438 * 17 16 14 42 42 H 1.07995 * 120.12831 * 179.97438 * 22 13 12 43 43 H 1.08005 * 119.87737 * 180.02562 * 23 22 13 44 44 H 1.08996 * 109.91850 * 265.97929 * 24 8 7 45 45 H 1.09003 * 110.08938 * 144.77334 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0043 0.3825 -1.2149 6 6 4.0201 0.5153 1.3072 7 6 5.3058 1.3103 1.6475 8 7 4.9604 2.7000 1.2530 9 6 6.1716 3.5051 1.0464 10 6 7.0570 3.4014 2.2615 11 6 6.9132 4.3119 3.2972 12 6 7.7129 4.2238 4.4136 13 6 8.6863 3.2110 4.4971 14 6 9.5167 3.1135 5.6373 15 1 10.4818 2.6344 5.5631 16 6 9.0880 3.6378 6.8620 17 7 7.8202 3.8964 7.0549 18 14 10.3261 3.9682 8.2212 19 1 10.8445 5.3538 8.0924 20 1 9.6660 3.8073 9.5418 21 1 11.4518 3.0061 8.1101 22 6 8.8269 2.2958 3.4375 23 6 8.0126 2.3996 2.3330 24 6 4.1823 2.5822 0.0008 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.6886 1.8464 -0.8899 29 1 1.6886 1.8463 0.8900 30 1 3.6982 0.8939 -2.1277 31 1 5.0905 0.2939 -1.1949 32 1 3.5581 -0.6115 -1.1883 33 1 3.2771 0.6273 2.0967 34 1 4.2504 -0.5368 1.1393 35 1 6.1505 0.9436 1.0644 36 1 5.5208 1.2555 2.7146 37 1 6.7088 3.1357 0.1729 38 1 5.8929 4.5468 0.8878 39 1 6.1680 5.0906 3.2292 40 1 7.5962 4.9314 5.2212 41 1 7.5229 4.2594 7.9040 42 1 9.5710 1.5148 3.4909 43 1 8.1184 1.6981 1.5187 44 1 4.8445 2.6848 -0.8589 45 1 3.4087 3.3494 -0.0330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398977955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = -47.856484 kcal Electronic energy + Delta-G solvation = -22966.518246 eV Core-core repulsion = 19754.431645 eV Total energy + Delta-G solvation = -3212.086600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83700 -39.40787 -38.25663 -35.91541 -34.51266 -31.94097 -31.12200 -30.65129 -28.49862 -28.30914 -26.91420 -25.55178 -24.70308 -22.89924 -22.40788 -21.28234 -20.04127 -19.20981 -17.41995 -17.15398 -16.98667 -16.62837 -16.35676 -15.93200 -15.75908 -15.64319 -15.13699 -14.71805 -14.36866 -14.13509 -13.93148 -13.80697 -13.52280 -13.47982 -13.21940 -12.96051 -12.79329 -12.69244 -12.56258 -12.32913 -12.31475 -12.18696 -11.99421 -11.75680 -11.50547 -11.38546 -11.33707 -11.20835 -10.99032 -10.54524 -9.38143 -9.30983 -9.08801 -8.62581 -6.32269 0.95767 1.16523 1.37327 1.50702 1.51283 2.20736 2.68409 2.83385 3.26388 3.63426 3.69974 3.79424 4.01848 4.21614 4.31898 4.32884 4.35160 4.44254 4.49565 4.54914 4.56601 4.59145 4.63571 4.68692 4.78062 4.82864 4.88309 4.90367 4.93812 5.03136 5.07162 5.15404 5.18269 5.22405 5.26411 5.39718 5.41928 5.48043 5.72412 5.91479 6.07783 6.12015 6.20750 6.27952 6.31737 6.40503 6.72483 6.95629 7.05744 8.34157 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028933 B = 0.003130 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.530471 B = 8943.000734 C = 9270.755656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.080 3.920 4 C -0.065 4.065 5 C -0.127 4.127 6 C -0.102 4.102 7 C 0.049 3.951 8 N -0.525 5.525 9 C 0.117 3.883 10 C -0.198 4.198 11 C -0.087 4.087 12 C -0.191 4.191 13 C 0.080 3.920 14 C -0.503 4.503 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.825 5.825 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.243 4.243 23 C -0.080 4.080 24 C 0.046 3.954 25 H 0.095 0.905 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.287 0.713 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.058 0.942 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 -3.945 -13.471 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.004 3.996 4 C -0.066 4.066 5 C -0.184 4.184 6 C -0.140 4.140 7 C -0.079 4.079 8 N -0.250 5.250 9 C -0.010 4.010 10 C -0.199 4.199 11 C -0.106 4.106 12 C -0.211 4.211 13 C 0.077 3.923 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.451 5.451 18 Si 0.803 3.197 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.182 1.182 22 C -0.263 4.263 23 C -0.098 4.098 24 C -0.082 4.082 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.127 0.873 44 H 0.076 0.924 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.742 -3.762 -12.910 17.852 hybrid contribution 0.867 0.042 0.505 1.004 sum -10.875 -3.719 -12.405 16.911 Atomic orbital electron populations 1.22886 0.79912 1.03603 1.00594 1.87840 1.20944 1.28318 1.95520 1.22559 0.92001 0.84473 1.00588 1.21391 0.93871 0.95098 0.96251 1.21755 1.00452 1.00165 0.96071 1.22486 0.96053 0.98881 0.96621 1.23015 0.96771 0.88364 0.99757 1.64850 1.19512 1.11477 1.29122 1.20863 0.88518 0.98127 0.93532 1.19269 1.01906 1.00611 0.98159 1.20729 0.97720 0.98485 0.93623 1.21260 1.01138 1.00545 0.98127 1.17955 0.91773 0.89980 0.92545 1.19833 1.03702 1.35451 0.94225 0.90860 1.26761 0.97174 0.92095 1.01994 1.69895 1.16734 1.32345 1.26167 0.85212 0.78528 0.79726 0.76266 1.18658 1.19234 1.18247 1.21125 1.05267 1.01964 0.97907 1.20619 0.95440 0.97080 0.96670 1.22974 0.97637 0.96347 0.91233 0.88679 0.93947 0.92972 0.91738 0.93532 0.91415 0.93125 0.91913 0.92003 0.90553 0.93955 0.93177 0.94181 0.90497 0.88030 0.88411 0.90226 0.88829 0.87317 0.92408 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.61 9.77 -148.98 -1.46 -10.07 16 3 C 0.08 1.61 4.50 71.98 0.32 1.93 16 4 C -0.07 -1.46 0.77 -51.30 -0.04 -1.50 16 5 C -0.13 -2.46 8.05 71.98 0.58 -1.88 16 6 C -0.10 -2.77 5.96 31.80 0.19 -2.58 16 7 C 0.05 1.59 4.96 86.65 0.43 2.02 16 8 N -0.53 -16.70 5.39 -887.58 -4.78 -21.49 16 9 C 0.12 3.92 5.18 85.56 0.44 4.36 16 10 C -0.20 -8.42 4.62 -19.67 -0.09 -8.52 16 11 C -0.09 -4.13 9.67 22.22 0.21 -3.91 16 12 C -0.19 -10.40 8.70 22.73 0.20 -10.20 16 13 C 0.08 4.45 5.58 -21.29 -0.12 4.33 16 14 C -0.50 -27.98 9.05 23.46 0.21 -27.77 16 15 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 16 C 0.03 1.79 5.14 85.26 0.44 2.23 16 17 N -0.83 -44.60 10.95 21.83 0.24 -44.36 16 18 Si 0.98 39.26 29.60 68.60 2.03 41.29 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 20 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 22 C -0.24 -12.24 9.80 22.73 0.22 -12.02 16 23 C -0.08 -3.49 8.30 22.22 0.18 -3.31 16 24 C 0.05 1.09 6.03 86.45 0.52 1.61 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.00 8.11 -2.39 -0.02 0.98 16 30 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.05 1.01 8.14 -2.38 -0.02 1.00 16 32 H 0.06 1.25 7.66 -2.39 -0.02 1.24 16 33 H 0.06 1.79 7.84 -2.39 -0.02 1.77 16 34 H 0.08 1.95 7.86 -2.38 -0.02 1.93 16 35 H 0.04 1.35 7.07 -2.39 -0.02 1.34 16 36 H 0.05 2.00 7.73 -2.39 -0.02 1.98 16 37 H 0.04 1.23 7.75 -2.39 -0.02 1.22 16 38 H 0.08 2.43 8.08 -2.39 -0.02 2.41 16 39 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 40 H 0.10 5.59 6.15 -2.91 -0.02 5.57 16 41 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 42 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 43 H 0.11 4.14 7.37 -2.91 -0.02 4.12 16 44 H 0.06 1.27 7.11 -2.39 -0.02 1.25 16 45 H 0.09 1.85 7.68 -2.39 -0.02 1.83 16 Total: -1.00 -61.25 355.92 1.93 -59.32 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.94 Total: 28.88 kcal Atomic # 6 Polarization: -58.53 SS G_CDS: 4.96 Total: -53.58 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -4.54 Total: -65.85 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.46 Total: -10.07 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -61.25 1.93 -59.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398977955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.464 kcal (2) G-P(sol) polarization free energy of solvation -61.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds