Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00164 * 2 1 4 4 H 1.09005 * 112.84921 * 338.31351 * 3 2 1 5 5 C 1.53784 * 113.61102 * 109.50656 * 3 2 1 6 6 C 1.53784 * 87.07841 * 139.98364 * 5 3 2 7 7 H 1.08996 * 113.61252 * 89.11571 * 6 5 3 8 8 N 1.46900 * 113.61362 * 219.93208 * 6 5 3 9 9 C 1.46899 * 111.00112 * 255.49750 * 8 6 5 10 10 C 1.50701 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.38642 * 119.74571 * 269.72813 * 10 9 8 12 12 C 1.37618 * 120.24572 * 179.72473 * 11 10 9 13 13 C 1.40717 * 119.74481 * 0.56523 * 12 11 10 14 14 C 1.41397 * 120.24250 * 179.68416 * 13 12 11 15 15 H 1.08000 * 119.99710 * 24.41156 * 14 13 12 16 16 C 1.39942 * 119.99700 * 204.41020 * 14 13 12 17 17 N 1.30821 * 120.00179 * 17.85950 * 16 14 13 18 18 Si 1.86804 * 119.99810 * 197.85636 * 16 14 13 19 19 H 1.48498 * 109.46950 * 89.99883 * 18 16 14 20 20 H 1.48493 * 109.47061 * 209.99909 * 18 16 14 21 21 H 1.48502 * 109.47233 * 330.00059 * 18 16 14 22 22 C 1.40711 * 119.50974 * 359.70702 * 13 12 11 23 23 C 1.37616 * 119.75190 * 359.97438 * 22 13 12 24 24 C 1.53775 * 87.08193 * 334.56563 * 6 5 3 25 25 C 1.53001 * 113.61794 * 270.88466 * 24 6 5 26 26 C 1.53003 * 113.61531 * 139.98299 * 24 6 5 27 27 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47451 * 59.99740 * 1 2 3 29 29 H 1.09000 * 109.47012 * 299.99815 * 1 2 3 30 30 H 1.08998 * 113.61097 * 254.52461 * 5 3 2 31 31 H 1.08995 * 113.61767 * 25.43365 * 5 3 2 32 32 H 1.00898 * 110.99646 * 19.44964 * 8 6 5 33 33 H 1.09004 * 109.47005 * 299.99717 * 9 8 6 34 34 H 1.09000 * 109.47019 * 59.99929 * 9 8 6 35 35 H 1.08002 * 119.87122 * 359.97401 * 11 10 9 36 36 H 1.07996 * 120.12544 * 180.27400 * 12 11 10 37 37 H 0.97006 * 119.99774 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.12426 * 179.97438 * 22 13 12 39 39 H 1.07993 * 119.88006 * 180.02562 * 23 22 13 40 40 H 1.08998 * 109.47146 * 176.99989 * 25 24 6 41 41 H 1.09001 * 109.47170 * 297.00308 * 25 24 6 42 42 H 1.09004 * 109.46832 * 56.99893 * 25 24 6 43 43 H 1.08999 * 109.46790 * 302.99565 * 26 24 6 44 44 H 1.08997 * 109.47335 * 63.00023 * 26 24 6 45 45 H 1.09002 * 109.46867 * 183.00202 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3297 2.0718 -0.3712 5 6 2.6906 1.6767 1.3282 6 6 3.8010 2.3277 0.4867 7 1 3.6112 3.3741 0.2478 8 7 5.1517 2.0997 1.0172 9 6 5.6699 3.3069 1.6745 10 6 7.0544 3.0355 2.2043 11 6 7.2148 2.5505 3.4932 12 6 8.4740 2.2936 3.9855 13 6 9.6016 2.5363 3.1795 14 6 10.9006 2.2825 3.6770 15 1 11.0439 1.5647 4.4712 16 6 12.0004 2.9613 3.1404 17 7 11.8190 4.0564 2.4481 18 14 13.7275 2.3037 3.4127 19 1 14.0812 1.3711 2.3126 20 1 14.6902 3.4342 3.4320 21 1 13.7841 1.5831 4.7099 22 6 9.4270 3.0340 1.8750 23 6 8.1581 3.2774 1.4011 24 6 3.4077 1.3576 -0.6397 25 6 4.1553 0.0236 -0.5887 26 6 3.4217 1.9952 -2.0305 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 2.1217 2.3887 1.9261 31 1 3.0272 0.8137 1.9026 32 1 5.1645 1.3114 1.6469 33 1 5.7108 4.1238 0.9539 34 1 5.0124 3.5823 2.4991 35 1 6.3480 2.3698 4.1117 36 1 8.5964 1.9116 4.9882 37 1 12.5814 4.5267 2.0758 38 1 10.2855 3.2243 1.2480 39 1 8.0217 3.6590 0.4000 40 1 3.7884 -0.6290 -1.3808 41 1 5.2220 0.1994 -0.7276 42 1 3.9881 -0.4497 0.3789 43 1 2.7568 2.8589 -2.0409 44 1 4.4352 2.3138 -2.2740 45 1 3.0828 1.2670 -2.7674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398984794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -16.919641 kcal Electronic energy + Delta-G solvation = -22662.627365 eV Core-core repulsion = 19451.882287 eV Total energy + Delta-G solvation = -3210.745078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30743 -37.69027 -36.72036 -34.44663 -33.07095 -30.56893 -29.68040 -29.17801 -27.44074 -27.02112 -26.10273 -23.61172 -22.58217 -22.29329 -20.91221 -19.89557 -18.49677 -17.26358 -16.77905 -15.52782 -15.51863 -15.28355 -15.16269 -14.44630 -14.15340 -13.93755 -13.55428 -13.47746 -13.24274 -13.14852 -12.51098 -12.16015 -12.08453 -11.91571 -11.87720 -11.79005 -11.68897 -11.46841 -11.42616 -11.08676 -10.99511 -10.66563 -10.61515 -10.56496 -10.39773 -10.10116 -9.53165 -9.42913 -9.32645 -9.10927 -7.92568 -7.40385 -7.27174 -6.73652 -4.32105 2.77051 3.08493 3.11640 3.12297 3.20579 3.66207 3.95097 4.46172 4.46648 4.55197 4.72321 4.72557 5.02640 5.09348 5.16599 5.28978 5.31123 5.43317 5.50313 5.63097 5.74531 5.79749 5.81904 5.90016 5.94135 5.97976 6.07129 6.10242 6.26825 6.29494 6.39584 6.41501 6.49136 6.62764 6.99482 7.10167 7.12524 7.33539 7.39786 7.48428 7.65017 7.77147 7.93506 8.09296 8.19021 8.33777 8.68264 8.92854 9.01535 10.20909 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.002842 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.721523 B = 9851.031475 C = 9986.442733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.067 3.933 4 H 0.082 0.918 5 C -0.187 4.187 6 C 0.077 3.923 7 H 0.094 0.906 8 N -0.665 5.665 9 C 0.125 3.875 10 C -0.213 4.213 11 C -0.085 4.085 12 C -0.227 4.227 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.793 5.793 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.168 4.168 23 C -0.078 4.078 24 C -0.068 4.068 25 C -0.110 4.110 26 C -0.134 4.134 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.343 0.657 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.280 0.720 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.750 -3.237 -6.015 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.009 3.991 4 H 0.100 0.900 5 C -0.227 4.227 6 C -0.035 4.035 7 H 0.112 0.888 8 N -0.295 5.295 9 C -0.003 4.003 10 C -0.214 4.214 11 C -0.104 4.104 12 C -0.247 4.247 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.419 5.419 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.187 4.187 23 C -0.097 4.097 24 C -0.070 4.070 25 C -0.167 4.167 26 C -0.191 4.191 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.162 0.838 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.176 -3.061 -6.721 17.782 hybrid contribution -0.040 0.104 1.013 1.019 sum -16.216 -2.957 -5.708 17.444 Atomic orbital electron populations 1.22745 0.81893 1.02430 0.99610 1.87966 1.18893 1.27465 1.94570 1.23796 0.93827 0.84762 0.96758 0.89988 1.24241 0.99617 1.01305 0.97498 1.22842 0.87726 0.97926 0.94999 0.88808 1.60482 1.19683 1.07264 1.42031 1.20583 0.93295 0.91272 0.95149 1.18899 0.92712 1.14063 0.95743 1.20353 0.95735 0.99690 0.94633 1.20922 0.92672 1.12184 0.98931 1.17625 0.92359 0.88272 0.90776 1.19600 0.91018 1.20963 1.17739 0.90527 1.25904 1.01603 0.93385 0.93269 1.69832 1.33408 1.12026 1.26587 0.86331 0.81143 0.79393 0.79954 1.19262 1.20368 1.18663 1.21315 0.95462 1.05673 0.96248 1.20489 0.92784 0.99410 0.97038 1.22264 0.92835 0.97095 0.94756 1.21236 1.00304 0.93757 1.01421 1.21710 1.02225 0.99658 0.95556 0.89945 0.94320 0.94352 0.91779 0.89077 0.83756 0.92054 0.96428 0.89996 0.89229 0.90926 0.86549 0.89508 0.93248 0.91179 0.92757 0.93213 0.91653 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.86 101.05 1.10 1.35 16 2 O -0.37 -4.30 9.86 -35.23 -0.35 -4.64 16 3 C 0.07 0.73 3.71 -25.92 -0.10 0.63 16 4 H 0.08 0.77 7.76 -51.93 -0.40 0.37 16 5 C -0.19 -2.15 7.19 -25.92 -0.19 -2.34 16 6 C 0.08 0.96 3.60 -66.90 -0.24 0.72 16 7 H 0.09 1.14 7.85 -51.93 -0.41 0.74 16 8 N -0.66 -10.24 5.64 -107.13 -0.60 -10.85 16 9 C 0.12 2.15 5.66 -4.98 -0.03 2.13 16 10 C -0.21 -4.56 5.42 -104.33 -0.56 -5.13 16 11 C -0.09 -1.89 9.67 -39.66 -0.38 -2.28 16 12 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 13 C 0.11 3.02 5.58 -106.82 -0.60 2.42 16 14 C -0.46 -12.43 9.05 -37.74 -0.34 -12.77 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.68 10.95 55.55 0.61 -20.07 16 18 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 C -0.17 -4.39 8.70 -38.88 -0.34 -4.73 16 23 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 24 C -0.07 -0.81 1.35 -153.70 -0.21 -1.01 16 25 C -0.11 -1.41 7.66 37.16 0.28 -1.13 16 26 C -0.13 -1.44 9.17 37.16 0.34 -1.10 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.14 7.31 -51.93 -0.38 0.76 16 32 H 0.34 5.41 8.05 -39.29 -0.32 5.10 16 33 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 34 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 35 H 0.08 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 38 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 39 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 42 H 0.05 0.72 7.25 -51.93 -0.38 0.34 16 43 H 0.05 0.47 8.01 -51.93 -0.42 0.05 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -27.35 363.38 -9.66 -37.01 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.65 Total: 8.89 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -2.11 Total: -29.62 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.00 Total: -30.92 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.35 Total: -4.64 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.35 -9.66 -37.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398984794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.086 kcal (2) G-P(sol) polarization free energy of solvation -27.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds