Wall clock time and date at job start Tue Mar 31 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00164 * 2 1 4 4 H 1.09005 * 112.84921 * 338.31351 * 3 2 1 5 5 C 1.53784 * 113.61102 * 109.50656 * 3 2 1 6 6 C 1.53784 * 87.07841 * 139.98364 * 5 3 2 7 7 H 1.08996 * 113.61252 * 89.11571 * 6 5 3 8 8 N 1.46900 * 113.61362 * 219.93208 * 6 5 3 9 9 C 1.46899 * 111.00112 * 255.49750 * 8 6 5 10 10 C 1.50701 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.38642 * 119.74571 * 269.72813 * 10 9 8 12 12 C 1.37618 * 120.24572 * 179.72473 * 11 10 9 13 13 C 1.40717 * 119.74481 * 0.56523 * 12 11 10 14 14 C 1.41397 * 120.24250 * 179.68416 * 13 12 11 15 15 H 1.08000 * 119.99710 * 24.41156 * 14 13 12 16 16 C 1.39942 * 119.99700 * 204.41020 * 14 13 12 17 17 N 1.30821 * 120.00179 * 17.85950 * 16 14 13 18 18 Si 1.86804 * 119.99810 * 197.85636 * 16 14 13 19 19 H 1.48498 * 109.46950 * 89.99883 * 18 16 14 20 20 H 1.48493 * 109.47061 * 209.99909 * 18 16 14 21 21 H 1.48502 * 109.47233 * 330.00059 * 18 16 14 22 22 C 1.40711 * 119.50974 * 359.70702 * 13 12 11 23 23 C 1.37616 * 119.75190 * 359.97438 * 22 13 12 24 24 C 1.53775 * 87.08193 * 334.56563 * 6 5 3 25 25 C 1.53001 * 113.61794 * 270.88466 * 24 6 5 26 26 C 1.53003 * 113.61531 * 139.98299 * 24 6 5 27 27 H 1.08999 * 109.46867 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47451 * 59.99740 * 1 2 3 29 29 H 1.09000 * 109.47012 * 299.99815 * 1 2 3 30 30 H 1.08998 * 113.61097 * 254.52461 * 5 3 2 31 31 H 1.08995 * 113.61767 * 25.43365 * 5 3 2 32 32 H 1.00898 * 110.99646 * 19.44964 * 8 6 5 33 33 H 1.09004 * 109.47005 * 299.99717 * 9 8 6 34 34 H 1.09000 * 109.47019 * 59.99929 * 9 8 6 35 35 H 1.08002 * 119.87122 * 359.97401 * 11 10 9 36 36 H 1.07996 * 120.12544 * 180.27400 * 12 11 10 37 37 H 0.97006 * 119.99774 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.12426 * 179.97438 * 22 13 12 39 39 H 1.07993 * 119.88006 * 180.02562 * 23 22 13 40 40 H 1.08998 * 109.47146 * 176.99989 * 25 24 6 41 41 H 1.09001 * 109.47170 * 297.00308 * 25 24 6 42 42 H 1.09004 * 109.46832 * 56.99893 * 25 24 6 43 43 H 1.08999 * 109.46790 * 302.99565 * 26 24 6 44 44 H 1.08997 * 109.47335 * 63.00023 * 26 24 6 45 45 H 1.09002 * 109.46867 * 183.00202 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3297 2.0718 -0.3712 5 6 2.6906 1.6767 1.3282 6 6 3.8010 2.3277 0.4867 7 1 3.6112 3.3741 0.2478 8 7 5.1517 2.0997 1.0172 9 6 5.6699 3.3069 1.6745 10 6 7.0544 3.0355 2.2043 11 6 7.2148 2.5505 3.4932 12 6 8.4740 2.2936 3.9855 13 6 9.6016 2.5363 3.1795 14 6 10.9006 2.2825 3.6770 15 1 11.0439 1.5647 4.4712 16 6 12.0004 2.9613 3.1404 17 7 11.8190 4.0564 2.4481 18 14 13.7275 2.3037 3.4127 19 1 14.0812 1.3711 2.3126 20 1 14.6902 3.4342 3.4320 21 1 13.7841 1.5831 4.7099 22 6 9.4270 3.0340 1.8750 23 6 8.1581 3.2774 1.4011 24 6 3.4077 1.3576 -0.6397 25 6 4.1553 0.0236 -0.5887 26 6 3.4217 1.9952 -2.0305 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 2.1217 2.3887 1.9261 31 1 3.0272 0.8137 1.9026 32 1 5.1645 1.3114 1.6469 33 1 5.7108 4.1238 0.9539 34 1 5.0124 3.5823 2.4991 35 1 6.3480 2.3698 4.1117 36 1 8.5964 1.9116 4.9882 37 1 12.5814 4.5267 2.0758 38 1 10.2855 3.2243 1.2480 39 1 8.0217 3.6590 0.4000 40 1 3.7884 -0.6290 -1.3808 41 1 5.2220 0.1994 -0.7276 42 1 3.9881 -0.4497 0.3789 43 1 2.7568 2.8589 -2.0409 44 1 4.4352 2.3138 -2.2740 45 1 3.0828 1.2670 -2.7674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398984794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:36 Heat of formation + Delta-G solvation = -31.160308 kcal Electronic energy + Delta-G solvation = -22663.244887 eV Core-core repulsion = 19451.882287 eV Total energy + Delta-G solvation = -3211.362600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23715 -39.47331 -37.65157 -36.05151 -34.64108 -31.87920 -31.17282 -30.94355 -28.37248 -28.21133 -27.31688 -25.09425 -23.55068 -23.39604 -22.79357 -21.65241 -19.49052 -19.19899 -17.61657 -17.17974 -16.60815 -16.35187 -16.17089 -15.79251 -15.58270 -15.55240 -14.84044 -14.68834 -14.41218 -14.21665 -14.06562 -13.78439 -13.42456 -13.27741 -13.06277 -12.93010 -12.89418 -12.74559 -12.66215 -12.51118 -12.27574 -12.20148 -12.10865 -11.57246 -11.55923 -11.46657 -11.23485 -11.02689 -10.97685 -10.24862 -9.31663 -9.26487 -9.02228 -8.62240 -6.31331 0.97336 1.18201 1.37732 1.50907 1.52284 2.21291 2.69994 2.90172 3.47744 3.56547 3.64940 3.81661 3.89305 4.00963 4.30716 4.35959 4.39486 4.44336 4.55599 4.59111 4.59842 4.62762 4.68938 4.75759 4.88373 4.88620 4.92542 4.95045 5.03571 5.09556 5.13778 5.17924 5.18897 5.27160 5.41737 5.48383 5.50552 5.59765 5.74131 5.97946 6.13043 6.25647 6.35320 6.38132 6.42172 6.57868 6.74085 6.96711 7.07271 8.34833 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.002842 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.721523 B = 9851.031475 C = 9986.442733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.075 3.925 4 H 0.103 0.897 5 C -0.182 4.182 6 C 0.074 3.926 7 H 0.105 0.895 8 N -0.673 5.673 9 C 0.133 3.867 10 C -0.198 4.198 11 C -0.085 4.085 12 C -0.244 4.244 13 C 0.078 3.922 14 C -0.504 4.504 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.192 4.192 23 C -0.085 4.085 24 C -0.073 4.073 25 C -0.104 4.104 26 C -0.131 4.131 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.340 0.660 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.287 0.713 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.767 -3.096 -6.407 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C 0.017 3.983 4 H 0.121 0.879 5 C -0.222 4.222 6 C -0.036 4.036 7 H 0.123 0.877 8 N -0.302 5.302 9 C 0.005 3.995 10 C -0.199 4.199 11 C -0.104 4.104 12 C -0.263 4.263 13 C 0.076 3.924 14 C -0.533 4.533 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.453 5.453 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.211 4.211 23 C -0.104 4.104 24 C -0.074 4.074 25 C -0.162 4.162 26 C -0.189 4.189 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.223 -2.920 -7.117 19.780 hybrid contribution 0.386 0.045 1.094 1.161 sum -17.837 -2.875 -6.023 19.045 Atomic orbital electron populations 1.22932 0.80203 1.03488 1.00599 1.87935 1.20820 1.27845 1.94633 1.23750 0.93529 0.85199 0.95821 0.87927 1.24156 0.99250 1.00953 0.97833 1.22938 0.86365 0.98796 0.95534 0.87738 1.60380 1.21955 1.06266 1.41643 1.20470 0.90895 0.92220 0.95897 1.19355 0.94454 1.11038 0.95056 1.20682 0.95785 0.98613 0.95288 1.21140 0.93360 1.12675 0.99160 1.17966 0.93383 0.89518 0.91525 1.19828 0.92200 1.22241 1.19048 0.90929 1.26750 1.05499 0.93141 0.92639 1.69885 1.34941 1.12987 1.27443 0.85218 0.75780 0.78891 0.79889 1.18767 1.19143 1.18258 1.21274 0.96094 1.07512 0.96269 1.20722 0.92482 0.99168 0.98007 1.22280 0.93649 0.96176 0.95301 1.21145 0.99313 0.94700 1.01015 1.21686 1.01925 1.00360 0.94880 0.89015 0.93026 0.93595 0.90521 0.90313 0.84100 0.91362 0.94884 0.86857 0.88833 0.90222 0.88488 0.88086 0.92939 0.93018 0.93602 0.91476 0.92916 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.86 113.37 1.23 1.56 16 2 O -0.39 -8.21 9.86 -148.98 -1.47 -9.67 16 3 C 0.08 1.42 3.71 31.12 0.12 1.54 16 4 H 0.10 1.52 7.76 -2.38 -0.02 1.51 16 5 C -0.18 -3.71 7.19 31.12 0.22 -3.49 16 6 C 0.07 1.68 3.60 45.44 0.16 1.85 16 7 H 0.10 2.18 7.85 -2.39 -0.02 2.16 16 8 N -0.67 -19.48 5.64 -492.86 -2.78 -22.27 16 9 C 0.13 4.28 5.66 85.56 0.48 4.76 16 10 C -0.20 -8.25 5.42 -19.67 -0.11 -8.36 16 11 C -0.09 -3.69 9.67 22.22 0.21 -3.48 16 12 C -0.24 -12.23 9.80 22.73 0.22 -12.01 16 13 C 0.08 4.37 5.58 -21.29 -0.12 4.25 16 14 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 15 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 16 C 0.03 1.78 5.14 85.26 0.44 2.22 16 17 N -0.83 -44.48 10.95 21.83 0.24 -44.24 16 18 Si 0.98 39.34 29.60 68.60 2.03 41.37 16 19 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 C -0.19 -10.42 8.70 22.73 0.20 -10.23 16 23 C -0.08 -4.01 9.67 22.22 0.21 -3.79 16 24 C -0.07 -1.57 1.35 -51.66 -0.07 -1.64 16 25 C -0.10 -2.60 7.66 71.98 0.55 -2.05 16 26 C -0.13 -2.51 9.17 71.98 0.66 -1.85 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.82 7.31 -2.39 -0.02 1.80 16 32 H 0.34 10.24 8.05 -89.70 -0.72 9.51 16 33 H 0.07 2.13 8.07 -2.38 -0.02 2.11 16 34 H 0.03 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.11 4.17 8.06 -2.91 -0.02 4.14 16 36 H 0.09 4.48 8.06 -2.91 -0.02 4.45 16 37 H 0.29 13.95 8.30 -92.70 -0.77 13.18 16 38 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 39 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.45 7.89 -2.39 -0.02 1.43 16 42 H 0.04 1.19 7.25 -2.38 -0.02 1.17 16 43 H 0.07 1.04 8.01 -2.39 -0.02 1.02 16 44 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -60.51 363.38 2.89 -57.63 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: 0.23 Total: 35.79 kcal Atomic # 6 Polarization: -63.25 SS G_CDS: 4.64 Total: -58.61 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -2.54 Total: -66.50 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -1.47 Total: -9.67 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -60.51 2.89 -57.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398984794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.466 kcal (2) G-P(sol) polarization free energy of solvation -60.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds