Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00070 * 2 1 4 4 H 1.09007 * 112.84576 * 21.69609 * 3 2 1 5 5 C 1.53777 * 113.61651 * 250.49444 * 3 2 1 6 6 C 1.53778 * 87.08008 * 270.79928 * 5 3 2 7 7 H 1.09000 * 113.61304 * 89.20095 * 6 5 3 8 8 N 1.46903 * 113.61371 * 220.01919 * 6 5 3 9 9 C 1.46904 * 110.99680 * 255.49401 * 8 6 5 10 10 C 1.50701 * 109.46875 * 180.02562 * 9 8 6 11 11 C 1.38643 * 119.74815 * 269.72687 * 10 9 8 12 12 C 1.37612 * 120.24583 * 179.76350 * 11 10 9 13 13 C 1.40713 * 119.74695 * 0.53175 * 12 11 10 14 14 C 1.41395 * 120.24480 * 179.74382 * 13 12 11 15 15 H 1.08005 * 120.00417 * 330.21792 * 14 13 12 16 16 C 1.39951 * 119.99979 * 150.20973 * 14 13 12 17 17 N 1.30827 * 119.99816 * 161.71765 * 16 14 13 18 18 Si 1.86799 * 120.00096 * 341.72997 * 16 14 13 19 19 H 1.48499 * 109.47434 * 95.40510 * 18 16 14 20 20 H 1.48502 * 109.46959 * 215.40842 * 18 16 14 21 21 H 1.48508 * 109.46849 * 335.40414 * 18 16 14 22 22 C 1.40717 * 119.51063 * 359.72392 * 13 12 11 23 23 C 1.37617 * 119.74415 * 359.97438 * 22 13 12 24 24 C 1.53780 * 87.08500 * 334.56820 * 6 5 3 25 25 C 1.53000 * 113.61856 * 139.98179 * 24 6 5 26 26 C 1.53007 * 113.61208 * 270.88645 * 24 6 5 27 27 H 1.09004 * 109.47042 * 60.00075 * 1 2 3 28 28 H 1.09004 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47420 * 299.99701 * 1 2 3 30 30 H 1.08999 * 113.61205 * 156.25050 * 5 3 2 31 31 H 1.09004 * 113.69111 * 25.35880 * 5 3 2 32 32 H 1.00897 * 110.99899 * 131.54446 * 8 6 5 33 33 H 1.08994 * 109.47264 * 299.99789 * 9 8 6 34 34 H 1.08996 * 109.47038 * 60.00276 * 9 8 6 35 35 H 1.08001 * 119.87299 * 359.97438 * 11 10 9 36 36 H 1.08009 * 120.12604 * 180.27577 * 12 11 10 37 37 H 0.96997 * 119.99832 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.12536 * 180.02562 * 22 13 12 39 39 H 1.07995 * 119.87235 * 180.02562 * 23 22 13 40 40 H 1.09004 * 109.47055 * 59.99941 * 25 24 6 41 41 H 1.08996 * 109.46977 * 180.02562 * 25 24 6 42 42 H 1.08997 * 109.46623 * 300.00026 * 25 24 6 43 43 H 1.08999 * 109.46950 * 59.99647 * 26 24 6 44 44 H 1.09001 * 109.46631 * 179.97438 * 26 24 6 45 45 H 1.08995 * 109.47075 * 299.99628 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3297 2.0717 0.3714 5 6 2.6906 1.6769 -1.3281 6 6 3.9729 1.0501 -0.7558 7 1 4.0681 -0.0157 -0.9633 8 7 5.1913 1.8050 -1.0778 9 6 5.9636 1.1333 -2.1316 10 6 7.2036 1.9348 -2.4339 11 6 7.1670 2.9156 -3.4131 12 6 8.2918 3.6568 -3.6941 13 6 9.4852 3.4085 -2.9911 14 6 10.6487 4.1601 -3.2751 15 1 10.8094 4.5520 -4.2687 16 6 11.5921 4.3964 -2.2688 17 7 12.8073 4.7639 -2.5846 18 14 11.1162 4.1868 -0.4746 19 1 11.5031 2.8286 -0.0152 20 1 11.8187 5.2057 0.3461 21 1 9.6485 4.3594 -0.3284 22 6 9.5121 2.4068 -2.0031 23 6 8.3735 1.6821 -1.7344 24 6 3.4074 1.3597 0.6403 25 6 3.6566 0.2491 1.6628 26 6 3.7889 2.7465 1.1624 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.7664 2.7515 -1.4943 31 1 2.2903 1.1425 -2.1897 32 1 5.7548 1.9507 -0.2537 33 1 6.2488 0.1370 -1.7940 34 1 5.3549 1.0515 -3.0321 35 1 6.2513 3.1009 -3.9549 36 1 8.2599 4.4235 -4.4542 37 1 13.4613 4.9273 -1.8871 38 1 10.4226 2.2082 -1.4573 39 1 8.3916 0.9132 -0.9763 40 1 4.7295 0.0918 1.7740 41 1 3.2297 0.5372 2.6234 42 1 3.1878 -0.6729 1.3191 43 1 3.4092 3.5081 0.4813 44 1 3.3546 2.8945 2.1511 45 1 4.8741 2.8247 1.2264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398984801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = -12.673337 kcal Electronic energy + Delta-G solvation = -22872.903986 eV Core-core repulsion = 19662.343042 eV Total energy + Delta-G solvation = -3210.560945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40325 -37.97058 -36.75652 -34.44148 -33.14990 -30.74395 -30.16343 -29.65510 -27.68681 -26.85876 -26.30990 -23.67311 -22.68609 -22.07480 -21.47575 -19.94767 -18.49260 -17.38873 -16.80208 -15.96511 -15.60392 -15.40100 -15.01600 -14.86960 -14.37844 -13.82382 -13.78546 -13.66785 -13.17538 -13.12690 -12.83596 -12.49782 -12.30226 -12.17997 -12.09970 -11.96276 -11.70423 -11.67106 -11.49004 -11.20793 -10.91038 -10.71914 -10.64378 -10.40285 -10.22417 -10.06406 -9.68032 -9.54197 -9.52795 -9.09475 -8.09788 -7.66938 -7.47189 -6.92679 -4.45108 2.58163 2.74728 3.12310 3.23318 3.34415 3.43158 4.00910 4.35941 4.41011 4.45529 4.67979 4.82569 4.98387 5.08843 5.11090 5.17202 5.23388 5.38010 5.47613 5.53838 5.61237 5.64928 5.75122 5.77977 5.84181 5.89801 5.93228 6.06835 6.08009 6.15950 6.17159 6.25739 6.36449 6.39749 6.61197 6.87546 6.94794 7.04301 7.21960 7.40085 7.47693 7.60239 7.73646 7.88088 7.92653 8.17752 8.38883 8.69885 8.83744 10.09988 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029477 B = 0.003338 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.678179 B = 8387.066458 C = 8874.387009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.068 3.932 4 H 0.072 0.928 5 C -0.144 4.144 6 C 0.074 3.926 7 H 0.070 0.930 8 N -0.671 5.671 9 C 0.123 3.877 10 C -0.213 4.213 11 C -0.059 4.059 12 C -0.211 4.211 13 C 0.095 3.905 14 C -0.449 4.449 15 H 0.089 0.911 16 C 0.084 3.916 17 N -0.811 5.811 18 Si 0.913 3.087 19 H -0.272 1.272 20 H -0.292 1.292 21 H -0.243 1.243 22 C -0.239 4.239 23 C -0.070 4.070 24 C -0.086 4.086 25 C -0.135 4.135 26 C -0.121 4.121 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.340 0.660 33 H 0.020 0.980 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.284 0.716 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.738 -6.619 7.908 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.009 3.991 4 H 0.090 0.910 5 C -0.183 4.183 6 C -0.036 4.036 7 H 0.088 0.912 8 N -0.303 5.303 9 C -0.005 4.005 10 C -0.214 4.214 11 C -0.078 4.078 12 C -0.231 4.231 13 C 0.092 3.908 14 C -0.478 4.478 15 H 0.107 0.893 16 C -0.135 4.135 17 N -0.435 5.435 18 Si 0.739 3.261 19 H -0.198 1.198 20 H -0.220 1.220 21 H -0.166 1.166 22 C -0.258 4.258 23 C -0.089 4.089 24 C -0.087 4.087 25 C -0.192 4.192 26 C -0.179 4.179 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.160 0.840 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.659 -6.271 7.486 21.951 hybrid contribution 0.232 -0.598 1.201 1.361 sum -19.428 -6.869 8.686 22.362 Atomic orbital electron populations 1.22773 0.81257 1.02537 0.99898 1.87849 1.19321 1.26810 1.94583 1.23149 0.93923 0.84613 0.97366 0.90991 1.23538 0.96048 1.02030 0.96639 1.23006 0.90725 0.95952 0.93960 0.91194 1.60825 1.07692 1.48883 1.12896 1.20595 0.92360 0.93367 0.94167 1.18947 0.93798 1.04499 1.04177 1.20460 0.96593 0.94572 0.96149 1.21026 0.92928 1.03315 1.05818 1.17738 0.92318 0.90384 0.90367 1.19507 1.00374 1.28918 0.99011 0.89262 1.26163 0.93379 0.91629 1.02307 1.69704 1.02995 1.34078 1.36737 0.86294 0.81343 0.77529 0.80897 1.19827 1.21987 1.16637 1.20981 0.97565 1.01444 1.05808 1.20441 0.93085 0.97892 0.97510 1.22325 0.94458 0.96862 0.95030 1.21631 1.01199 0.98484 0.97884 1.21471 1.02286 0.94008 1.00092 0.94067 0.89775 0.94155 0.88520 0.91524 0.83985 0.96203 0.91859 0.88870 0.88330 0.90539 0.88410 0.89409 0.92874 0.92929 0.91509 0.91723 0.92865 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.86 101.05 1.10 1.34 16 2 O -0.37 -3.97 9.18 -35.23 -0.32 -4.30 16 3 C 0.07 0.71 3.77 -25.92 -0.10 0.61 16 4 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 5 C -0.14 -1.67 7.36 -25.92 -0.19 -1.86 16 6 C 0.07 0.94 3.49 -66.90 -0.23 0.71 16 7 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 8 N -0.67 -9.98 6.00 -107.13 -0.64 -10.63 16 9 C 0.12 2.04 5.67 -4.97 -0.03 2.01 16 10 C -0.21 -4.29 5.41 -104.33 -0.56 -4.85 16 11 C -0.06 -1.25 9.67 -39.66 -0.38 -1.63 16 12 C -0.21 -4.98 9.80 -38.88 -0.38 -5.36 16 13 C 0.09 2.44 5.11 -106.83 -0.55 1.89 16 14 C -0.45 -12.33 9.57 -37.74 -0.36 -12.69 16 15 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 16 C 0.08 2.23 5.40 -17.34 -0.09 2.13 16 17 N -0.81 -21.89 13.93 55.55 0.77 -21.12 16 18 Si 0.91 21.10 24.52 -169.99 -4.17 16.94 16 19 H -0.27 -6.12 6.71 56.52 0.38 -5.74 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.24 -5.76 6.86 56.52 0.39 -5.38 16 22 C -0.24 -5.80 7.18 -38.87 -0.28 -6.08 16 23 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 24 C -0.09 -0.94 1.26 -153.69 -0.19 -1.14 16 25 C -0.13 -1.43 9.05 37.16 0.34 -1.09 16 26 C -0.12 -1.28 8.47 37.16 0.31 -0.97 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 1.15 7.65 -51.93 -0.40 0.75 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.34 5.15 7.08 -39.29 -0.28 4.88 16 33 H 0.02 0.32 8.07 -51.93 -0.42 -0.10 16 34 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 37 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 38 H 0.10 2.38 4.73 -52.49 -0.25 2.14 16 39 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.75 6.97 -51.93 -0.36 0.38 16 43 H 0.06 0.70 7.34 -51.93 -0.38 0.31 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.78 6.79 -51.93 -0.35 0.43 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -27.57 355.96 -8.48 -36.05 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.49 Total: 6.57 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -1.99 Total: -28.87 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.13 Total: -31.75 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.32 Total: -4.30 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.17 Total: 16.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.57 -8.48 -36.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398984801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.372 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds