Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00070 * 2 1 4 4 H 1.09007 * 112.84576 * 21.69609 * 3 2 1 5 5 C 1.53777 * 113.61651 * 250.49444 * 3 2 1 6 6 C 1.53778 * 87.08008 * 270.79928 * 5 3 2 7 7 H 1.09000 * 113.61304 * 89.20095 * 6 5 3 8 8 N 1.46903 * 113.61371 * 220.01919 * 6 5 3 9 9 C 1.46904 * 110.99680 * 255.49401 * 8 6 5 10 10 C 1.50701 * 109.46875 * 180.02562 * 9 8 6 11 11 C 1.38643 * 119.74815 * 269.72687 * 10 9 8 12 12 C 1.37612 * 120.24583 * 179.76350 * 11 10 9 13 13 C 1.40713 * 119.74695 * 0.53175 * 12 11 10 14 14 C 1.41395 * 120.24480 * 179.74382 * 13 12 11 15 15 H 1.08005 * 120.00417 * 330.21792 * 14 13 12 16 16 C 1.39951 * 119.99979 * 150.20973 * 14 13 12 17 17 N 1.30827 * 119.99816 * 161.71765 * 16 14 13 18 18 Si 1.86799 * 120.00096 * 341.72997 * 16 14 13 19 19 H 1.48499 * 109.47434 * 95.40510 * 18 16 14 20 20 H 1.48502 * 109.46959 * 215.40842 * 18 16 14 21 21 H 1.48508 * 109.46849 * 335.40414 * 18 16 14 22 22 C 1.40717 * 119.51063 * 359.72392 * 13 12 11 23 23 C 1.37617 * 119.74415 * 359.97438 * 22 13 12 24 24 C 1.53780 * 87.08500 * 334.56820 * 6 5 3 25 25 C 1.53000 * 113.61856 * 139.98179 * 24 6 5 26 26 C 1.53007 * 113.61208 * 270.88645 * 24 6 5 27 27 H 1.09004 * 109.47042 * 60.00075 * 1 2 3 28 28 H 1.09004 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47420 * 299.99701 * 1 2 3 30 30 H 1.08999 * 113.61205 * 156.25050 * 5 3 2 31 31 H 1.09004 * 113.69111 * 25.35880 * 5 3 2 32 32 H 1.00897 * 110.99899 * 131.54446 * 8 6 5 33 33 H 1.08994 * 109.47264 * 299.99789 * 9 8 6 34 34 H 1.08996 * 109.47038 * 60.00276 * 9 8 6 35 35 H 1.08001 * 119.87299 * 359.97438 * 11 10 9 36 36 H 1.08009 * 120.12604 * 180.27577 * 12 11 10 37 37 H 0.96997 * 119.99832 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.12536 * 180.02562 * 22 13 12 39 39 H 1.07995 * 119.87235 * 180.02562 * 23 22 13 40 40 H 1.09004 * 109.47055 * 59.99941 * 25 24 6 41 41 H 1.08996 * 109.46977 * 180.02562 * 25 24 6 42 42 H 1.08997 * 109.46623 * 300.00026 * 25 24 6 43 43 H 1.08999 * 109.46950 * 59.99647 * 26 24 6 44 44 H 1.09001 * 109.46631 * 179.97438 * 26 24 6 45 45 H 1.08995 * 109.47075 * 299.99628 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3297 2.0717 0.3714 5 6 2.6906 1.6769 -1.3281 6 6 3.9729 1.0501 -0.7558 7 1 4.0681 -0.0157 -0.9633 8 7 5.1913 1.8050 -1.0778 9 6 5.9636 1.1333 -2.1316 10 6 7.2036 1.9348 -2.4339 11 6 7.1670 2.9156 -3.4131 12 6 8.2918 3.6568 -3.6941 13 6 9.4852 3.4085 -2.9911 14 6 10.6487 4.1601 -3.2751 15 1 10.8094 4.5520 -4.2687 16 6 11.5921 4.3964 -2.2688 17 7 12.8073 4.7639 -2.5846 18 14 11.1162 4.1868 -0.4746 19 1 11.5031 2.8286 -0.0152 20 1 11.8187 5.2057 0.3461 21 1 9.6485 4.3594 -0.3284 22 6 9.5121 2.4068 -2.0031 23 6 8.3735 1.6821 -1.7344 24 6 3.4074 1.3597 0.6403 25 6 3.6566 0.2491 1.6628 26 6 3.7889 2.7465 1.1624 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.7664 2.7515 -1.4943 31 1 2.2903 1.1425 -2.1897 32 1 5.7548 1.9507 -0.2537 33 1 6.2488 0.1370 -1.7940 34 1 5.3549 1.0515 -3.0321 35 1 6.2513 3.1009 -3.9549 36 1 8.2599 4.4235 -4.4542 37 1 13.4613 4.9273 -1.8871 38 1 10.4226 2.2082 -1.4573 39 1 8.3916 0.9132 -0.9763 40 1 4.7295 0.0918 1.7740 41 1 3.2297 0.5372 2.6234 42 1 3.1878 -0.6729 1.3191 43 1 3.4092 3.5081 0.4813 44 1 3.3546 2.8945 2.1511 45 1 4.8741 2.8247 1.2264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398984801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = -28.473379 kcal Electronic energy + Delta-G solvation = -22873.589128 eV Core-core repulsion = 19662.343042 eV Total energy + Delta-G solvation = -3211.246086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28619 -39.71505 -37.63066 -36.00450 -34.78711 -32.16886 -31.47991 -31.27525 -28.52134 -28.13245 -27.26616 -25.08655 -23.75460 -23.32096 -23.06603 -21.68831 -19.42125 -19.31209 -17.79911 -17.37120 -16.71081 -16.36411 -16.18913 -15.92534 -15.77266 -15.53688 -15.31431 -14.90745 -14.51538 -14.11466 -14.05999 -13.92543 -13.74650 -13.59466 -13.12636 -13.03380 -12.92142 -12.71650 -12.53777 -12.48882 -12.36301 -12.32995 -12.03814 -11.77356 -11.56172 -11.43296 -11.23935 -10.96769 -10.86699 -10.32720 -9.50707 -9.38551 -9.17176 -8.89256 -6.48086 0.77273 0.91245 1.25900 1.40418 1.49626 2.13160 2.57646 2.72001 3.36218 3.51974 3.62262 3.67808 3.92880 4.11899 4.24564 4.27952 4.32771 4.34333 4.44062 4.56375 4.57128 4.60474 4.67070 4.75674 4.81420 4.82987 4.86467 4.89326 5.01557 5.02790 5.06542 5.06774 5.12422 5.20270 5.25058 5.35014 5.52400 5.52521 5.64402 5.77594 5.93051 6.08871 6.25826 6.28796 6.35668 6.44291 6.54482 6.76793 6.86071 8.19680 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029477 B = 0.003338 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.678179 B = 8387.066458 C = 8874.387009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.386 6.386 3 C 0.076 3.924 4 H 0.088 0.912 5 C -0.142 4.142 6 C 0.070 3.930 7 H 0.062 0.938 8 N -0.673 5.673 9 C 0.128 3.872 10 C -0.188 4.188 11 C -0.060 4.060 12 C -0.223 4.223 13 C 0.072 3.928 14 C -0.489 4.489 15 H 0.053 0.947 16 C 0.046 3.954 17 N -0.853 5.853 18 Si 0.968 3.032 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.252 1.252 22 C -0.249 4.249 23 C -0.075 4.075 24 C -0.082 4.082 25 C -0.131 4.131 26 C -0.119 4.119 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.339 0.661 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.293 0.707 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.809 -8.006 9.893 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.305 6.305 3 C 0.017 3.983 4 H 0.105 0.895 5 C -0.181 4.181 6 C -0.040 4.040 7 H 0.080 0.920 8 N -0.305 5.305 9 C 0.000 4.000 10 C -0.189 4.189 11 C -0.078 4.078 12 C -0.243 4.243 13 C 0.070 3.930 14 C -0.519 4.519 15 H 0.072 0.928 16 C -0.168 4.168 17 N -0.480 5.480 18 Si 0.792 3.208 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.176 1.176 22 C -0.268 4.268 23 C -0.094 4.094 24 C -0.083 4.083 25 C -0.188 4.188 26 C -0.176 4.176 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.743 -7.666 9.463 25.799 hybrid contribution 0.916 -0.300 0.511 1.091 sum -21.827 -7.966 9.975 25.286 Atomic orbital electron populations 1.22962 0.79665 1.03661 1.00737 1.87825 1.21117 1.26947 1.94609 1.23068 0.93950 0.85054 0.96237 0.89456 1.23512 0.95564 1.01735 0.97284 1.23060 0.89938 0.95299 0.95717 0.91974 1.60770 1.08004 1.49138 1.12569 1.20533 0.90962 0.93161 0.95354 1.19437 0.94840 1.02802 1.01821 1.20773 0.96669 0.94060 0.96318 1.21212 0.93303 1.03973 1.05773 1.17875 0.92416 0.90961 0.91763 1.19487 1.02629 1.31593 0.98200 0.92838 1.26835 0.93103 0.91245 1.05607 1.69733 1.03876 1.36272 1.38133 0.85447 0.80351 0.78353 0.76672 1.18510 1.20509 1.17589 1.21090 0.98606 1.01564 1.05580 1.20776 0.92444 0.97995 0.98152 1.22309 0.94662 0.97171 0.94151 1.21592 1.00963 0.98019 0.98269 1.21452 1.01682 0.93577 1.00922 0.93515 0.88634 0.92995 0.88709 0.91782 0.84081 0.95125 0.90995 0.86129 0.88360 0.89698 0.88814 0.86415 0.93222 0.91824 0.92212 0.91983 0.91320 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.86 113.37 1.23 1.55 16 2 O -0.39 -7.29 9.18 -148.98 -1.37 -8.66 16 3 C 0.08 1.35 3.77 31.12 0.12 1.47 16 4 H 0.09 1.31 7.85 -2.38 -0.02 1.29 16 5 C -0.14 -2.92 7.36 31.12 0.23 -2.69 16 6 C 0.07 1.58 3.49 45.44 0.16 1.74 16 7 H 0.06 1.54 7.85 -2.39 -0.02 1.52 16 8 N -0.67 -17.92 6.00 -492.85 -2.96 -20.87 16 9 C 0.13 3.79 5.67 85.56 0.48 4.27 16 10 C -0.19 -7.01 5.41 -19.67 -0.11 -7.12 16 11 C -0.06 -2.39 9.67 22.22 0.21 -2.18 16 12 C -0.22 -10.52 9.80 22.73 0.22 -10.30 16 13 C 0.07 3.78 5.11 -21.29 -0.11 3.67 16 14 C -0.49 -28.27 9.57 23.46 0.22 -28.05 16 15 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 16 C 0.05 2.53 5.40 85.26 0.46 2.99 16 17 N -0.85 -48.02 13.93 21.83 0.30 -47.72 16 18 Si 0.97 43.86 24.52 68.60 1.68 45.54 16 19 H -0.26 -11.11 6.71 99.48 0.67 -10.44 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.25 -11.64 6.86 99.48 0.68 -10.96 16 22 C -0.25 -11.91 7.18 22.73 0.16 -11.75 16 23 C -0.08 -3.04 9.67 22.22 0.21 -2.82 16 24 C -0.08 -1.57 1.26 -51.65 -0.07 -1.63 16 25 C -0.13 -2.42 9.05 71.98 0.65 -1.77 16 26 C -0.12 -2.17 8.47 71.98 0.61 -1.56 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 1.99 7.65 -2.39 -0.02 1.97 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.34 9.22 7.08 -89.70 -0.64 8.59 16 33 H 0.03 0.86 8.07 -2.39 -0.02 0.85 16 34 H 0.07 2.05 8.08 -2.39 -0.02 2.03 16 35 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 36 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 38 H 0.09 4.51 4.73 -2.91 -0.01 4.50 16 39 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.19 6.97 -2.39 -0.02 1.17 16 43 H 0.06 1.16 7.34 -2.39 -0.02 1.14 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 1.18 6.79 -2.39 -0.02 1.16 16 Total: -1.00 -60.64 355.96 2.63 -58.01 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.26 Total: 27.88 kcal Atomic # 6 Polarization: -58.88 SS G_CDS: 4.70 Total: -54.18 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -2.65 Total: -68.59 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -1.37 Total: -8.66 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.68 Total: 45.54 kcal Total: -60.64 2.63 -58.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398984801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.535 kcal (2) G-P(sol) polarization free energy of solvation -60.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds