Wall clock time and date at job start Tue Mar 31 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.58570 * 2 1 4 4 C 1.54279 * 109.52807 * 120.17597 * 2 1 3 5 5 N 1.40443 * 111.68753 * 42.66794 * 4 2 1 6 6 C 1.46902 * 110.99543 * 188.30165 * 5 4 2 7 7 C 1.50707 * 109.46778 * 169.99854 * 6 5 4 8 8 C 1.38641 * 119.74947 * 89.99953 * 7 6 5 9 9 C 1.37615 * 120.24615 * 179.97438 * 8 7 6 10 10 C 1.40713 * 119.74919 * 0.28004 * 9 8 7 11 11 C 1.41394 * 120.24431 * 179.70153 * 10 9 8 12 12 H 1.07998 * 120.00287 * 24.82467 * 11 10 9 13 13 C 1.39948 * 119.99494 * 204.83238 * 11 10 9 14 14 N 1.30818 * 120.00080 * 14.69736 * 13 11 10 15 15 Si 1.86805 * 119.99723 * 194.69342 * 13 11 10 16 16 H 1.48504 * 109.46807 * 60.00146 * 15 13 11 17 17 H 1.48503 * 109.46882 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47127 * 300.00338 * 15 13 11 19 19 C 1.40719 * 119.50784 * 359.42326 * 10 9 8 20 20 C 1.37621 * 119.74536 * 0.60033 * 19 10 9 21 21 C 1.47630 * 114.31854 * 61.80985 * 5 4 2 22 22 C 1.50896 * 108.77089 * 279.99937 * 21 5 4 23 23 C 1.53615 * 111.71458 * 91.00675 * 22 21 5 24 24 O 1.40630 * 109.52857 * 239.82292 * 2 1 3 25 25 H 1.08995 * 109.47556 * 337.61840 * 1 2 3 26 26 H 1.09003 * 109.47329 * 97.62095 * 1 2 3 27 27 H 1.09004 * 109.46930 * 217.61722 * 1 2 3 28 28 H 1.09003 * 109.47335 * 180.17469 * 3 2 1 29 29 H 1.09003 * 109.47225 * 300.17884 * 3 2 1 30 30 H 1.09006 * 109.47088 * 60.17826 * 3 2 1 31 31 H 1.09001 * 109.03721 * 282.09954 * 4 2 1 32 32 H 1.09000 * 109.03305 * 163.23534 * 4 2 1 33 33 H 1.08997 * 109.47412 * 50.00064 * 6 5 4 34 34 H 1.09000 * 109.47253 * 289.99629 * 6 5 4 35 35 H 1.08004 * 119.87153 * 359.95053 * 8 7 6 36 36 H 1.08006 * 120.12450 * 180.02562 * 9 8 7 37 37 H 0.97007 * 119.99744 * 180.02562 * 14 13 11 38 38 H 1.07996 * 120.12815 * 180.29706 * 19 10 9 39 39 H 1.07997 * 119.87859 * 179.70326 * 20 19 10 40 40 H 1.09006 * 109.59130 * 39.78428 * 21 5 4 41 41 H 1.09004 * 109.59014 * 160.21127 * 21 5 4 42 42 H 1.08998 * 109.03101 * 330.43473 * 22 21 5 43 43 H 1.08996 * 108.97300 * 211.54731 * 22 21 5 44 44 H 1.09009 * 108.86630 * 197.84541 * 23 22 21 45 45 H 1.09007 * 108.78713 * 79.37828 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0428 1.4414 0.0000 4 6 2.0457 -0.7309 1.2570 5 7 1.3148 -1.9026 1.5126 6 6 1.6835 -2.4800 2.8121 7 6 0.7186 -3.5831 3.1635 8 6 0.9877 -4.8844 2.7681 9 6 0.1139 -5.8995 3.0839 10 6 -1.0591 -5.6118 3.8058 11 6 -1.9672 -6.6458 4.1305 12 1 -1.6210 -7.6663 4.2008 13 6 -3.3149 -6.3467 4.3605 14 7 -3.7974 -5.1847 4.0022 15 14 -4.4247 -7.6068 5.1791 16 1 -3.8941 -7.9319 6.5275 17 1 -5.7955 -7.0501 5.3070 18 1 -4.4668 -8.8401 4.3531 19 6 -1.3188 -4.2884 4.2074 20 6 -0.4312 -3.2889 3.8801 21 6 1.3957 -2.9154 0.4415 22 6 0.4427 -2.5307 -0.6635 23 6 1.1265 -1.6551 -1.7245 24 8 2.0001 -0.6662 -1.1458 25 1 -0.3634 0.9502 0.3913 26 1 -0.3634 -0.1363 -1.0186 27 1 -0.3633 -0.8141 0.6273 28 1 3.1329 1.4393 -0.0031 29 1 1.6779 1.9569 -0.8884 30 1 1.6831 1.9551 0.8916 31 1 1.9610 -0.0646 2.1155 32 1 3.0944 -0.9905 1.1121 33 1 1.6445 -1.7055 3.5780 34 1 2.6938 -2.8852 2.7561 35 1 1.8863 -5.1020 2.2098 36 1 0.3257 -6.9127 2.7752 37 1 -4.7315 -4.9773 4.1620 38 1 -2.2136 -4.0571 4.7660 39 1 -0.6307 -2.2717 4.1830 40 1 2.4124 -2.9533 0.0504 41 1 1.1185 -3.8914 0.8397 42 1 -0.3950 -1.9806 -0.2349 43 1 0.0668 -3.4367 -1.1387 44 1 0.3598 -1.1483 -2.3107 45 1 1.7091 -2.2961 -2.3862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399057568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:35 Heat of formation + Delta-G solvation = -6.591201 kcal Electronic energy + Delta-G solvation = -23870.696436 eV Core-core repulsion = 20660.399232 eV Total energy + Delta-G solvation = -3210.297203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33099 -37.84732 -36.08294 -33.75235 -33.52792 -31.63407 -30.12198 -29.30253 -27.35043 -27.00973 -26.01222 -24.48808 -22.69833 -21.07416 -20.44501 -19.65620 -19.40126 -17.29798 -16.48452 -16.13094 -15.56818 -15.30263 -15.28231 -14.27973 -14.15642 -13.97861 -13.66269 -13.41470 -12.72083 -12.67148 -12.55189 -12.34435 -12.18874 -11.93193 -11.70101 -11.58072 -11.56094 -11.40867 -11.21659 -11.02495 -10.81854 -10.71009 -10.46952 -10.38913 -10.22493 -10.09035 -9.58465 -9.37116 -9.20632 -9.09867 -7.77028 -7.42968 -7.25730 -6.72689 -4.35378 2.75533 3.05682 3.07279 3.08857 3.18438 3.79989 3.93153 4.32282 4.71404 4.83885 4.98308 5.05427 5.24351 5.28167 5.44310 5.55759 5.60332 5.69495 5.70969 5.77429 5.81746 5.83675 5.91105 5.96299 6.04434 6.07749 6.20812 6.23566 6.25778 6.35518 6.43006 6.47302 6.51050 6.66678 6.96378 7.07784 7.30769 7.36423 7.47885 7.59619 7.62497 7.75427 7.94059 8.06433 8.15483 8.31193 8.65933 8.90705 8.98744 10.20379 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027299 B = 0.003758 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.429181 B = 7449.564442 C = 7563.026476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.121 3.879 3 C -0.139 4.139 4 C 0.057 3.943 5 N -0.547 5.547 6 C 0.125 3.875 7 C -0.205 4.205 8 C -0.087 4.087 9 C -0.226 4.226 10 C 0.112 3.888 11 C -0.463 4.463 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.795 5.795 15 Si 0.908 3.092 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.266 1.266 19 C -0.165 4.165 20 C -0.081 4.081 21 C 0.061 3.939 22 C -0.173 4.173 23 C 0.068 3.932 24 O -0.387 6.387 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.022 0.978 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.280 0.720 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.031 0.969 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.375 8.610 -6.464 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.081 3.919 3 C -0.197 4.197 4 C -0.073 4.073 5 N -0.270 5.270 6 C 0.000 4.000 7 C -0.207 4.207 8 C -0.106 4.106 9 C -0.246 4.246 10 C 0.109 3.891 11 C -0.493 4.493 12 H 0.093 0.907 13 C -0.142 4.142 14 N -0.421 5.421 15 Si 0.733 3.267 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.191 1.191 19 C -0.184 4.184 20 C -0.100 4.100 21 C -0.065 4.065 22 C -0.210 4.210 23 C -0.008 4.008 24 O -0.306 6.306 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.875 8.933 -6.535 12.531 hybrid contribution -0.049 -0.827 0.263 0.869 sum 5.826 8.106 -6.273 11.789 Atomic orbital electron populations 1.23046 0.94984 1.04031 1.03066 1.21367 0.94069 0.91421 0.85089 1.21875 1.01615 0.94088 1.02117 1.21521 0.95036 0.92980 0.97786 1.59166 1.58619 1.05846 1.03382 1.20695 0.95058 0.95417 0.88852 1.18876 0.99025 0.92651 1.10108 1.20339 0.97661 0.93021 0.99595 1.20941 0.99214 0.97116 1.07298 1.17611 0.90731 0.92925 0.87822 1.19572 0.92531 0.95251 1.41945 0.90660 1.25891 0.98997 0.96010 0.93303 1.69806 1.15541 1.21920 1.34797 0.86373 0.78588 0.81115 0.80656 1.18885 1.20347 1.19076 1.21378 1.00003 0.93017 1.04043 1.20489 0.93897 0.97137 0.98432 1.21824 0.97178 0.96722 0.90799 1.22491 1.01195 1.00710 0.96617 1.22846 0.93634 0.89471 0.94875 1.87458 1.45668 1.53633 1.43888 0.92798 0.92186 0.87582 0.92264 0.92152 0.91324 0.90867 0.96112 0.91780 0.95947 0.89867 0.89233 0.90906 0.86265 0.89557 0.95065 0.88590 0.88212 0.91042 0.93414 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 7.38 37.16 0.27 -2.29 16 2 C 0.12 1.60 1.10 -89.95 -0.10 1.50 16 3 C -0.14 -1.51 8.55 37.15 0.32 -1.20 16 4 C 0.06 0.82 4.16 -6.50 -0.03 0.79 16 5 N -0.55 -8.92 2.88 -241.01 -0.69 -9.61 16 6 C 0.13 2.20 5.12 -4.97 -0.03 2.17 16 7 C -0.20 -4.31 4.90 -104.32 -0.51 -4.82 16 8 C -0.09 -1.89 7.68 -39.66 -0.30 -2.20 16 9 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 10 C 0.11 2.94 5.58 -106.82 -0.60 2.34 16 11 C -0.46 -12.21 9.07 -37.74 -0.34 -12.56 16 12 H 0.08 1.91 7.89 -52.49 -0.41 1.50 16 13 C 0.08 1.88 5.20 -17.34 -0.09 1.79 16 14 N -0.80 -20.42 10.81 55.55 0.60 -19.81 16 15 Si 0.91 18.59 29.58 -169.99 -5.03 13.56 16 16 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 C -0.17 -4.23 8.69 -38.87 -0.34 -4.56 16 20 C -0.08 -1.84 9.67 -39.66 -0.38 -2.23 16 21 C 0.06 1.00 5.15 -4.48 -0.02 0.97 16 22 C -0.17 -2.49 5.32 -27.47 -0.15 -2.64 16 23 C 0.07 0.87 5.96 37.48 0.22 1.09 16 24 O -0.39 -5.57 9.74 -34.28 -0.33 -5.90 16 25 H 0.05 0.64 7.73 -51.93 -0.40 0.24 16 26 H 0.06 0.75 5.71 -51.93 -0.30 0.45 16 27 H 0.11 1.64 4.50 -51.93 -0.23 1.41 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 31 H 0.07 0.98 7.70 -51.93 -0.40 0.58 16 32 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.06 1.06 7.79 -51.93 -0.40 0.66 16 34 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.08 1.62 7.60 -52.48 -0.40 1.22 16 36 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 37 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 38 H 0.12 3.18 6.09 -52.49 -0.32 2.86 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.03 0.50 7.64 -51.93 -0.40 0.11 16 41 H 0.10 1.75 4.55 -51.93 -0.24 1.52 16 42 H 0.10 1.54 4.42 -51.93 -0.23 1.31 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.56 6.90 -51.92 -0.36 0.20 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -26.70 337.47 -9.85 -36.54 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.02 Total: 7.80 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -2.45 Total: -27.66 kcal Atomic # 7 Polarization: -29.33 SS G_CDS: -0.09 Total: -29.43 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.33 Total: -5.90 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.70 -9.85 -36.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399057568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.953 kcal (2) G-P(sol) polarization free energy of solvation -26.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds