Wall clock time and date at job start Tue Mar 31 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.58570 * 2 1 4 4 C 1.54279 * 109.52807 * 120.17597 * 2 1 3 5 5 N 1.40443 * 111.68753 * 42.66794 * 4 2 1 6 6 C 1.46902 * 110.99543 * 188.30165 * 5 4 2 7 7 C 1.50707 * 109.46778 * 169.99854 * 6 5 4 8 8 C 1.38641 * 119.74947 * 89.99953 * 7 6 5 9 9 C 1.37615 * 120.24615 * 179.97438 * 8 7 6 10 10 C 1.40713 * 119.74919 * 0.28004 * 9 8 7 11 11 C 1.41394 * 120.24431 * 179.70153 * 10 9 8 12 12 H 1.07998 * 120.00287 * 24.82467 * 11 10 9 13 13 C 1.39948 * 119.99494 * 204.83238 * 11 10 9 14 14 N 1.30818 * 120.00080 * 14.69736 * 13 11 10 15 15 Si 1.86805 * 119.99723 * 194.69342 * 13 11 10 16 16 H 1.48504 * 109.46807 * 60.00146 * 15 13 11 17 17 H 1.48503 * 109.46882 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47127 * 300.00338 * 15 13 11 19 19 C 1.40719 * 119.50784 * 359.42326 * 10 9 8 20 20 C 1.37621 * 119.74536 * 0.60033 * 19 10 9 21 21 C 1.47630 * 114.31854 * 61.80985 * 5 4 2 22 22 C 1.50896 * 108.77089 * 279.99937 * 21 5 4 23 23 C 1.53615 * 111.71458 * 91.00675 * 22 21 5 24 24 O 1.40630 * 109.52857 * 239.82292 * 2 1 3 25 25 H 1.08995 * 109.47556 * 337.61840 * 1 2 3 26 26 H 1.09003 * 109.47329 * 97.62095 * 1 2 3 27 27 H 1.09004 * 109.46930 * 217.61722 * 1 2 3 28 28 H 1.09003 * 109.47335 * 180.17469 * 3 2 1 29 29 H 1.09003 * 109.47225 * 300.17884 * 3 2 1 30 30 H 1.09006 * 109.47088 * 60.17826 * 3 2 1 31 31 H 1.09001 * 109.03721 * 282.09954 * 4 2 1 32 32 H 1.09000 * 109.03305 * 163.23534 * 4 2 1 33 33 H 1.08997 * 109.47412 * 50.00064 * 6 5 4 34 34 H 1.09000 * 109.47253 * 289.99629 * 6 5 4 35 35 H 1.08004 * 119.87153 * 359.95053 * 8 7 6 36 36 H 1.08006 * 120.12450 * 180.02562 * 9 8 7 37 37 H 0.97007 * 119.99744 * 180.02562 * 14 13 11 38 38 H 1.07996 * 120.12815 * 180.29706 * 19 10 9 39 39 H 1.07997 * 119.87859 * 179.70326 * 20 19 10 40 40 H 1.09006 * 109.59130 * 39.78428 * 21 5 4 41 41 H 1.09004 * 109.59014 * 160.21127 * 21 5 4 42 42 H 1.08998 * 109.03101 * 330.43473 * 22 21 5 43 43 H 1.08996 * 108.97300 * 211.54731 * 22 21 5 44 44 H 1.09009 * 108.86630 * 197.84541 * 23 22 21 45 45 H 1.09007 * 108.78713 * 79.37828 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0428 1.4414 0.0000 4 6 2.0457 -0.7309 1.2570 5 7 1.3148 -1.9026 1.5126 6 6 1.6835 -2.4800 2.8121 7 6 0.7186 -3.5831 3.1635 8 6 0.9877 -4.8844 2.7681 9 6 0.1139 -5.8995 3.0839 10 6 -1.0591 -5.6118 3.8058 11 6 -1.9672 -6.6458 4.1305 12 1 -1.6210 -7.6663 4.2008 13 6 -3.3149 -6.3467 4.3605 14 7 -3.7974 -5.1847 4.0022 15 14 -4.4247 -7.6068 5.1791 16 1 -3.8941 -7.9319 6.5275 17 1 -5.7955 -7.0501 5.3070 18 1 -4.4668 -8.8401 4.3531 19 6 -1.3188 -4.2884 4.2074 20 6 -0.4312 -3.2889 3.8801 21 6 1.3957 -2.9154 0.4415 22 6 0.4427 -2.5307 -0.6635 23 6 1.1265 -1.6551 -1.7245 24 8 2.0001 -0.6662 -1.1458 25 1 -0.3634 0.9502 0.3913 26 1 -0.3634 -0.1363 -1.0186 27 1 -0.3633 -0.8141 0.6273 28 1 3.1329 1.4393 -0.0031 29 1 1.6779 1.9569 -0.8884 30 1 1.6831 1.9551 0.8916 31 1 1.9610 -0.0646 2.1155 32 1 3.0944 -0.9905 1.1121 33 1 1.6445 -1.7055 3.5780 34 1 2.6938 -2.8852 2.7561 35 1 1.8863 -5.1020 2.2098 36 1 0.3257 -6.9127 2.7752 37 1 -4.7315 -4.9773 4.1620 38 1 -2.2136 -4.0571 4.7660 39 1 -0.6307 -2.2717 4.1830 40 1 2.4124 -2.9533 0.0504 41 1 1.1185 -3.8914 0.8397 42 1 -0.3950 -1.9806 -0.2349 43 1 0.0668 -3.4367 -1.1387 44 1 0.3598 -1.1483 -2.3107 45 1 1.7091 -2.2961 -2.3862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399057568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:35 Heat of formation + Delta-G solvation = -19.406673 kcal Electronic energy + Delta-G solvation = -23871.252156 eV Core-core repulsion = 20660.399232 eV Total energy + Delta-G solvation = -3210.852924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48110 -39.54123 -37.48205 -35.48300 -34.65552 -32.95646 -31.71666 -31.14722 -28.66522 -28.33021 -27.11587 -26.01317 -24.08653 -22.87762 -21.93428 -21.19572 -20.47155 -19.19635 -17.64199 -17.30303 -17.12388 -16.80165 -16.35660 -15.84906 -15.57882 -15.43740 -15.27499 -14.86221 -14.24763 -13.98232 -13.74609 -13.64951 -13.40241 -13.31597 -13.24077 -12.98782 -12.76142 -12.69289 -12.67594 -12.44884 -12.35080 -12.17651 -12.02538 -11.81220 -11.40280 -11.30277 -11.22732 -11.17427 -10.99637 -10.24665 -9.30388 -9.19969 -8.98142 -8.58347 -6.31624 0.98086 1.17544 1.38385 1.49296 1.53352 2.21857 2.68955 2.81124 3.17939 3.75373 3.82181 3.92538 4.01789 4.13131 4.20854 4.34498 4.36307 4.38695 4.51630 4.59170 4.61483 4.64553 4.71077 4.77979 4.80305 4.85206 4.87917 4.94984 5.07411 5.09154 5.14893 5.17874 5.21963 5.26708 5.39124 5.43885 5.50261 5.55826 5.74112 5.98592 6.12924 6.17050 6.32837 6.42338 6.49755 6.62868 6.74761 6.97818 7.07657 8.36746 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027299 B = 0.003758 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.429181 B = 7449.564442 C = 7563.026476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.118 3.882 3 C -0.135 4.135 4 C 0.055 3.945 5 N -0.550 5.550 6 C 0.129 3.871 7 C -0.189 4.189 8 C -0.084 4.084 9 C -0.242 4.242 10 C 0.080 3.920 11 C -0.503 4.503 12 H 0.072 0.928 13 C 0.035 3.965 14 N -0.827 5.827 15 Si 0.980 3.020 16 H -0.261 1.261 17 H -0.267 1.267 18 H -0.261 1.261 19 C -0.188 4.188 20 C -0.084 4.084 21 C 0.064 3.936 22 C -0.171 4.171 23 C 0.070 3.930 24 O -0.399 6.399 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.016 0.984 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.286 0.714 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.096 9.826 -7.143 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.078 3.922 3 C -0.193 4.193 4 C -0.074 4.074 5 N -0.274 5.274 6 C 0.003 3.997 7 C -0.191 4.191 8 C -0.102 4.102 9 C -0.261 4.261 10 C 0.078 3.922 11 C -0.533 4.533 12 H 0.090 0.910 13 C -0.179 4.179 14 N -0.454 5.454 15 Si 0.801 3.199 16 H -0.186 1.186 17 H -0.192 1.192 18 H -0.185 1.185 19 C -0.208 4.208 20 C -0.103 4.103 21 C -0.063 4.063 22 C -0.208 4.208 23 C -0.006 4.006 24 O -0.319 6.319 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.034 0.966 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.127 0.873 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.612 10.160 -7.226 14.113 hybrid contribution -0.147 -1.117 0.405 1.197 sum 6.465 9.043 -6.821 13.043 Atomic orbital electron populations 1.22959 0.95038 1.03714 1.02924 1.21487 0.94012 0.92449 0.84212 1.21865 1.01774 0.92442 1.03200 1.21614 0.94463 0.92278 0.99075 1.59121 1.59212 1.06331 1.02703 1.20642 0.94234 0.94695 0.90103 1.19243 0.98527 0.93611 1.07702 1.20598 0.97935 0.92747 0.98925 1.21127 0.99337 0.98097 1.07548 1.17934 0.91875 0.93468 0.88961 1.19819 0.93842 0.95277 1.44382 0.90989 1.26706 0.99905 0.98070 0.93226 1.69869 1.16218 1.23659 1.35606 0.85281 0.76755 0.78431 0.79399 1.18569 1.19176 1.18530 1.21325 1.00397 0.93736 1.05301 1.20703 0.93990 0.97303 0.98326 1.21765 0.97633 0.95669 0.91232 1.22452 1.00610 1.01149 0.96607 1.22890 0.94046 0.89332 0.94336 1.87451 1.46361 1.53887 1.44218 0.91572 0.91701 0.89947 0.92025 0.91452 0.89910 0.89630 0.96575 0.90382 0.95026 0.87350 0.88916 0.90311 0.88137 0.87932 0.94866 0.90879 0.89242 0.90743 0.91966 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.60 7.38 71.98 0.53 -4.07 16 2 C 0.12 2.84 1.10 -10.36 -0.01 2.83 16 3 C -0.14 -2.52 8.55 71.98 0.62 -1.91 16 4 C 0.06 1.46 4.16 87.91 0.37 1.83 16 5 N -0.55 -16.95 2.88 -916.43 -2.64 -19.60 16 6 C 0.13 4.27 5.12 85.56 0.44 4.71 16 7 C -0.19 -7.80 4.90 -19.67 -0.10 -7.89 16 8 C -0.08 -3.58 7.68 22.22 0.17 -3.41 16 9 C -0.24 -11.89 9.80 22.73 0.22 -11.67 16 10 C 0.08 4.36 5.58 -21.29 -0.12 4.24 16 11 C -0.50 -27.59 9.07 23.46 0.21 -27.38 16 12 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 13 C 0.04 1.80 5.20 85.26 0.44 2.24 16 14 N -0.83 -43.78 10.81 21.83 0.24 -43.54 16 15 Si 0.98 38.69 29.58 68.60 2.03 40.72 16 16 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 17 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 19 C -0.19 -9.95 8.69 22.73 0.20 -9.76 16 20 C -0.08 -3.87 9.67 22.22 0.21 -3.66 16 21 C 0.06 1.99 5.15 85.48 0.44 2.43 16 22 C -0.17 -4.72 5.32 30.12 0.16 -4.56 16 23 C 0.07 1.63 5.96 72.19 0.43 2.06 16 24 O -0.40 -10.49 9.74 -145.58 -1.42 -11.91 16 25 H 0.07 1.41 7.73 -2.39 -0.02 1.40 16 26 H 0.06 1.49 5.71 -2.39 -0.01 1.47 16 27 H 0.08 2.44 4.50 -2.38 -0.01 2.43 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.30 8.13 -2.38 -0.02 1.28 16 31 H 0.09 2.04 7.70 -2.39 -0.02 2.02 16 32 H 0.02 0.45 8.09 -2.39 -0.02 0.43 16 33 H 0.08 2.38 7.79 -2.39 -0.02 2.36 16 34 H 0.03 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.11 4.06 7.60 -2.91 -0.02 4.04 16 36 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 37 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 38 H 0.10 5.62 6.09 -2.91 -0.02 5.60 16 39 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.03 1.01 7.64 -2.38 -0.02 1.00 16 41 H 0.07 2.61 4.55 -2.39 -0.01 2.59 16 42 H 0.09 2.69 4.42 -2.39 -0.01 2.68 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 1.29 6.90 -2.38 -0.02 1.28 16 45 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -58.50 337.47 3.39 -55.11 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.97 Total: 33.19 kcal Atomic # 6 Polarization: -58.19 SS G_CDS: 4.22 Total: -53.97 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -2.41 Total: -63.14 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -1.42 Total: -11.91 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -58.50 3.39 -55.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399057568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.706 kcal (2) G-P(sol) polarization free energy of solvation -58.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds