Wall clock time and date at job start Tue Mar 31 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46910 * 2 1 4 4 C 1.53002 * 109.47104 * 119.99994 * 2 1 3 5 5 C 1.53002 * 109.46929 * 65.00001 * 4 2 1 6 6 C 1.53001 * 109.46560 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46921 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47130 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00369 * 0.02562 * 8 7 6 10 10 N 1.34786 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.39120 * 119.99860 * 184.37270 * 10 8 7 12 12 C 1.38647 * 120.28887 * 325.34680 * 11 10 8 13 13 C 1.38223 * 120.03661 * 180.26219 * 12 11 10 14 14 C 1.38864 * 120.61570 * 359.73851 * 13 12 11 15 15 C 1.36475 * 120.57506 * 0.02562 * 14 13 12 16 16 C 1.40732 * 119.94463 * 359.97438 * 15 14 13 17 17 C 1.41067 * 120.30097 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00158 * 154.83018 * 17 16 15 19 19 C 1.39960 * 120.00035 * 334.81866 * 17 16 15 20 20 N 1.30850 * 120.00172 * 334.82627 * 19 17 16 21 21 Si 1.86797 * 119.99964 * 154.81633 * 19 17 16 22 22 H 1.48493 * 109.47433 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47399 * 300.00688 * 21 19 17 24 24 H 1.48501 * 109.46727 * 60.00450 * 21 19 17 25 25 H 1.09000 * 109.46733 * 60.00146 * 1 2 3 26 26 H 1.09001 * 109.46880 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47118 * 299.99932 * 1 2 3 28 28 H 1.08996 * 109.47118 * 240.00068 * 2 1 3 29 29 H 1.09005 * 109.46850 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47315 * 300.00051 * 3 2 1 31 31 H 1.08996 * 109.47174 * 60.00103 * 3 2 1 32 32 H 1.08998 * 109.46775 * 304.99983 * 4 2 1 33 33 H 1.08999 * 109.47143 * 185.00331 * 4 2 1 34 34 H 1.08995 * 109.46927 * 60.00514 * 5 4 2 35 35 H 1.08991 * 109.47194 * 299.99538 * 5 4 2 36 36 H 1.09001 * 109.47481 * 60.00621 * 6 5 4 37 37 H 1.09001 * 109.47491 * 299.99481 * 6 5 4 38 38 H 1.09004 * 109.46955 * 59.99934 * 7 6 5 39 39 H 1.08999 * 109.47357 * 300.00325 * 7 6 5 40 40 H 0.96996 * 119.99503 * 4.37567 * 10 8 7 41 41 H 1.08002 * 119.97971 * 359.97438 * 12 11 10 42 42 H 1.07995 * 119.69606 * 179.76870 * 13 12 11 43 43 H 1.07997 * 119.71651 * 180.02562 * 14 13 12 44 44 H 1.08000 * 120.02277 * 180.02562 * 15 14 13 45 45 H 0.97005 * 119.99936 * 354.62807 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 6 2.1458 -2.9168 2.4369 7 6 1.7405 -4.3909 2.3760 8 6 2.2439 -5.1015 3.6058 9 8 2.8653 -4.4893 4.4484 10 7 2.0028 -6.4175 3.7700 11 6 2.3874 -7.0537 4.9458 12 6 3.5462 -6.6687 5.6025 13 6 3.9263 -7.3080 6.7675 14 6 3.1542 -8.3346 7.2951 15 6 2.0064 -8.7305 6.6720 16 6 1.5969 -8.0960 5.4844 17 6 0.4121 -8.4996 4.8339 18 1 -0.1184 -7.8058 4.1984 19 6 -0.0760 -9.7993 5.0116 20 7 0.7425 -10.7667 5.3375 21 14 -1.8961 -10.1527 4.7839 22 1 -2.1547 -11.5944 5.0280 23 1 -2.6825 -9.3393 5.7459 24 1 -2.2980 -9.8051 3.3972 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -0.2617 2.1369 33 1 3.1263 -0.6443 1.2952 34 1 2.0699 -2.6550 0.3003 35 1 0.5490 -2.2724 1.1421 36 1 1.7115 -2.4575 3.3249 37 1 3.2322 -2.8400 2.4824 38 1 2.1744 -4.8506 1.4880 39 1 0.6542 -4.4675 2.3307 40 1 1.5611 -6.9207 3.0682 41 1 4.1547 -5.8718 5.2009 42 1 4.8320 -7.0062 7.2724 43 1 3.4646 -8.8239 8.2064 44 1 1.4124 -9.5296 7.0904 45 1 1.6973 -10.6006 5.3797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410831299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:39 Heat of formation + Delta-G solvation = -64.824262 kcal Electronic energy + Delta-G solvation = -22218.282185 eV Core-core repulsion = 19005.459807 eV Total energy + Delta-G solvation = -3212.822379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.62229 -37.67437 -37.16181 -34.13414 -33.80436 -33.71819 -29.89202 -29.33141 -28.20210 -27.40939 -25.26259 -24.52139 -21.89084 -21.11643 -20.63090 -20.13879 -19.29774 -17.99735 -16.62193 -16.05979 -16.00650 -15.20582 -14.75617 -14.46145 -14.38673 -14.14277 -13.89503 -13.67166 -13.14225 -12.79456 -12.56026 -12.48632 -12.35884 -12.21202 -11.97933 -11.82497 -11.58259 -11.43052 -11.27816 -11.02496 -10.83809 -10.77880 -10.69300 -10.56784 -10.45295 -10.44407 -10.29397 -9.68396 -9.30661 -9.03281 -8.81525 -7.61521 -7.38671 -6.95029 -4.47703 2.58882 2.80248 3.10974 3.22716 3.31712 3.38250 3.92430 3.96505 4.54139 4.56111 4.66684 4.71288 4.99661 5.07167 5.16517 5.34411 5.36394 5.43109 5.47030 5.50772 5.57662 5.63046 5.66643 5.75531 5.83650 5.85874 5.93931 6.02183 6.10271 6.18227 6.21146 6.32930 6.34640 6.42733 6.49723 6.85197 6.96573 7.16694 7.39438 7.54268 7.72768 7.78162 7.92613 8.03204 8.23772 8.37724 8.69502 8.78710 9.01454 9.99585 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.003161 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.146316 B = 8856.998044 C =10224.285080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.139 4.139 8 C 0.495 3.505 9 O -0.543 6.543 10 N -0.639 5.639 11 C 0.007 3.993 12 C -0.074 4.074 13 C -0.241 4.241 14 C -0.093 4.093 15 C -0.209 4.209 16 C 0.090 3.910 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.040 3.960 20 N -0.795 5.795 21 Si 1.064 2.936 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.276 1.276 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.402 0.598 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.355 13.415 -10.732 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.140 4.140 7 C -0.179 4.179 8 C 0.282 3.718 9 O -0.422 6.422 10 N -0.281 5.281 11 C -0.087 4.087 12 C -0.094 4.094 13 C -0.261 4.261 14 C -0.112 4.112 15 C -0.229 4.229 16 C 0.086 3.914 17 C -0.554 4.554 18 H 0.092 0.908 19 C -0.182 4.182 20 N -0.418 5.418 21 Si 0.888 3.112 22 H -0.199 1.199 23 H -0.201 1.201 24 H -0.202 1.202 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.237 0.763 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.126 0.874 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.044 12.617 -10.046 16.257 hybrid contribution 0.938 0.906 -0.352 1.351 sum -1.105 13.523 -10.398 17.094 Atomic orbital electron populations 1.21901 0.95358 1.01970 1.01467 1.21137 0.95902 0.96034 0.98609 1.21849 1.00910 0.96208 1.01565 1.21652 1.00884 0.95180 0.97570 1.21675 1.01129 0.95005 0.98032 1.21318 1.01805 0.92847 0.98015 1.21656 1.02603 0.96837 0.96780 1.20700 0.80697 0.82063 0.88292 1.90632 1.40654 1.66247 1.44649 1.42913 1.58605 1.08442 1.18184 1.17628 0.96495 1.03593 0.90958 1.20700 0.94499 0.98385 0.95784 1.20266 1.02498 1.02819 1.00525 1.20396 0.95703 0.96754 0.98299 1.20750 0.99266 1.05526 0.97329 1.17501 0.91248 0.91689 0.91011 1.20315 1.07493 0.99747 1.27847 0.90803 1.26970 1.07307 0.92164 0.91756 1.70466 1.07860 1.34587 1.28909 0.83644 0.72673 0.77208 0.77694 1.19859 1.20051 1.20172 0.93084 0.92287 0.92745 0.91380 0.92781 0.92941 0.92745 0.91907 0.91979 0.92123 0.91756 0.91320 0.91403 0.89452 0.89230 0.76318 0.87180 0.89049 0.89208 0.87391 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.95 37.16 0.33 -0.81 16 2 C -0.10 -0.78 2.92 -90.62 -0.26 -1.04 16 3 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 4 C -0.12 -1.04 4.68 -26.73 -0.13 -1.17 16 5 C -0.12 -1.17 4.97 -26.73 -0.13 -1.30 16 6 C -0.10 -1.28 4.50 -26.73 -0.12 -1.40 16 7 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 8 C 0.50 9.41 7.67 -10.98 -0.08 9.32 16 9 O -0.54 -12.20 13.40 5.56 0.07 -12.12 16 10 N -0.64 -13.14 4.90 -9.48 -0.05 -13.18 16 11 C 0.01 0.17 6.33 -83.17 -0.53 -0.36 16 12 C -0.07 -1.80 8.69 -39.44 -0.34 -2.14 16 13 C -0.24 -5.68 10.04 -39.36 -0.39 -6.08 16 14 C -0.09 -2.20 9.97 -39.99 -0.40 -2.60 16 15 C -0.21 -5.34 7.87 -39.28 -0.31 -5.65 16 16 C 0.09 2.32 5.32 -106.65 -0.57 1.75 16 17 C -0.53 -13.19 8.35 -37.86 -0.32 -13.50 16 18 H 0.07 1.77 7.39 -52.49 -0.39 1.38 16 19 C 0.04 0.98 4.95 -17.33 -0.09 0.89 16 20 N -0.80 -20.41 12.32 55.55 0.68 -19.72 16 21 Si 1.06 20.76 30.00 -169.99 -5.10 15.66 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 36 H 0.07 0.96 8.10 -51.93 -0.42 0.53 16 37 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.40 7.39 7.95 -40.82 -0.32 7.07 16 41 H 0.11 2.66 6.20 -52.49 -0.33 2.34 16 42 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.11 2.81 6.45 -52.49 -0.34 2.48 16 45 H 0.30 7.94 6.62 -40.82 -0.27 7.67 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -28.81 361.66 -9.55 -38.36 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -7.46 Total: 12.37 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -3.15 Total: -26.81 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.64 Total: -32.91 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.10 Total: 15.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.81 -9.55 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410831299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.462 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds