Wall clock time and date at job start Tue Mar 31 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46910 * 2 1 4 4 C 1.53002 * 109.47104 * 119.99994 * 2 1 3 5 5 C 1.53002 * 109.46929 * 65.00001 * 4 2 1 6 6 C 1.53001 * 109.46560 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46921 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47130 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00369 * 0.02562 * 8 7 6 10 10 N 1.34786 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.39120 * 119.99860 * 184.37270 * 10 8 7 12 12 C 1.38647 * 120.28887 * 325.34680 * 11 10 8 13 13 C 1.38223 * 120.03661 * 180.26219 * 12 11 10 14 14 C 1.38864 * 120.61570 * 359.73851 * 13 12 11 15 15 C 1.36475 * 120.57506 * 0.02562 * 14 13 12 16 16 C 1.40732 * 119.94463 * 359.97438 * 15 14 13 17 17 C 1.41067 * 120.30097 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00158 * 154.83018 * 17 16 15 19 19 C 1.39960 * 120.00035 * 334.81866 * 17 16 15 20 20 N 1.30850 * 120.00172 * 334.82627 * 19 17 16 21 21 Si 1.86797 * 119.99964 * 154.81633 * 19 17 16 22 22 H 1.48493 * 109.47433 * 180.02562 * 21 19 17 23 23 H 1.48507 * 109.47399 * 300.00688 * 21 19 17 24 24 H 1.48501 * 109.46727 * 60.00450 * 21 19 17 25 25 H 1.09000 * 109.46733 * 60.00146 * 1 2 3 26 26 H 1.09001 * 109.46880 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47118 * 299.99932 * 1 2 3 28 28 H 1.08996 * 109.47118 * 240.00068 * 2 1 3 29 29 H 1.09005 * 109.46850 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47315 * 300.00051 * 3 2 1 31 31 H 1.08996 * 109.47174 * 60.00103 * 3 2 1 32 32 H 1.08998 * 109.46775 * 304.99983 * 4 2 1 33 33 H 1.08999 * 109.47143 * 185.00331 * 4 2 1 34 34 H 1.08995 * 109.46927 * 60.00514 * 5 4 2 35 35 H 1.08991 * 109.47194 * 299.99538 * 5 4 2 36 36 H 1.09001 * 109.47481 * 60.00621 * 6 5 4 37 37 H 1.09001 * 109.47491 * 299.99481 * 6 5 4 38 38 H 1.09004 * 109.46955 * 59.99934 * 7 6 5 39 39 H 1.08999 * 109.47357 * 300.00325 * 7 6 5 40 40 H 0.96996 * 119.99503 * 4.37567 * 10 8 7 41 41 H 1.08002 * 119.97971 * 359.97438 * 12 11 10 42 42 H 1.07995 * 119.69606 * 179.76870 * 13 12 11 43 43 H 1.07997 * 119.71651 * 180.02562 * 14 13 12 44 44 H 1.08000 * 120.02277 * 180.02562 * 15 14 13 45 45 H 0.97005 * 119.99936 * 354.62807 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 6 2.1458 -2.9168 2.4369 7 6 1.7405 -4.3909 2.3760 8 6 2.2439 -5.1015 3.6058 9 8 2.8653 -4.4893 4.4484 10 7 2.0028 -6.4175 3.7700 11 6 2.3874 -7.0537 4.9458 12 6 3.5462 -6.6687 5.6025 13 6 3.9263 -7.3080 6.7675 14 6 3.1542 -8.3346 7.2951 15 6 2.0064 -8.7305 6.6720 16 6 1.5969 -8.0960 5.4844 17 6 0.4121 -8.4996 4.8339 18 1 -0.1184 -7.8058 4.1984 19 6 -0.0760 -9.7993 5.0116 20 7 0.7425 -10.7667 5.3375 21 14 -1.8961 -10.1527 4.7839 22 1 -2.1547 -11.5944 5.0280 23 1 -2.6825 -9.3393 5.7459 24 1 -2.2980 -9.8051 3.3972 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -0.2617 2.1369 33 1 3.1263 -0.6443 1.2952 34 1 2.0699 -2.6550 0.3003 35 1 0.5490 -2.2724 1.1421 36 1 1.7115 -2.4575 3.3249 37 1 3.2322 -2.8400 2.4824 38 1 2.1744 -4.8506 1.4880 39 1 0.6542 -4.4675 2.3307 40 1 1.5611 -6.9207 3.0682 41 1 4.1547 -5.8718 5.2009 42 1 4.8320 -7.0062 7.2724 43 1 3.4646 -8.8239 8.2064 44 1 1.4124 -9.5296 7.0904 45 1 1.6973 -10.6006 5.3797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410831299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:39 Heat of formation + Delta-G solvation = -78.079391 kcal Electronic energy + Delta-G solvation = -22218.856971 eV Core-core repulsion = 19005.459807 eV Total energy + Delta-G solvation = -3213.397164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25995 -39.28897 -38.06371 -35.82751 -35.49508 -34.88486 -31.28410 -31.09844 -29.67698 -27.98584 -27.03640 -25.67782 -23.41908 -22.77513 -21.88454 -21.07190 -20.65453 -19.84445 -18.22902 -17.71344 -17.03923 -16.59286 -16.22267 -15.88668 -15.63990 -15.20229 -15.07630 -15.00126 -14.54502 -14.20692 -14.13130 -13.87122 -13.57255 -13.30158 -13.19985 -13.02872 -12.69834 -12.56639 -12.45182 -12.30930 -12.19757 -12.11878 -11.95583 -11.66667 -11.48622 -11.44466 -11.32104 -11.23119 -11.05848 -10.81107 -10.52809 -9.55938 -9.30087 -8.81267 -6.41528 0.76594 0.90766 1.53785 1.65895 1.79673 1.81788 2.34039 2.45288 2.69827 3.53683 3.75982 3.84144 3.97753 4.10006 4.16003 4.27572 4.38309 4.39176 4.51081 4.58449 4.67495 4.69768 4.80949 4.84411 4.86253 4.94194 4.95232 4.98783 5.07570 5.08744 5.15868 5.20728 5.30681 5.33390 5.36021 5.43744 5.49069 5.58083 5.59223 5.68387 5.77804 5.92985 6.02864 6.12864 6.34791 6.64254 6.88757 6.91701 7.40540 8.05285 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.003161 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.146316 B = 8856.998044 C =10224.285080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.097 4.097 7 C -0.127 4.127 8 C 0.491 3.509 9 O -0.581 6.581 10 N -0.641 5.641 11 C 0.002 3.998 12 C -0.091 4.091 13 C -0.243 4.243 14 C -0.097 4.097 15 C -0.228 4.228 16 C 0.062 3.938 17 C -0.542 4.542 18 H 0.082 0.918 19 C 0.006 3.994 20 N -0.815 5.815 21 Si 1.115 2.885 22 H -0.276 1.276 23 H -0.270 1.270 24 H -0.250 1.250 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.412 0.588 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 14.206 -12.441 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.149 4.149 6 C -0.136 4.136 7 C -0.166 4.166 8 C 0.281 3.719 9 O -0.462 6.462 10 N -0.284 5.284 11 C -0.093 4.093 12 C -0.111 4.111 13 C -0.263 4.263 14 C -0.116 4.116 15 C -0.249 4.249 16 C 0.058 3.942 17 C -0.570 4.570 18 H 0.100 0.900 19 C -0.211 4.211 20 N -0.438 5.438 21 Si 0.933 3.067 22 H -0.201 1.201 23 H -0.195 1.195 24 H -0.174 1.174 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.248 0.752 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.113 0.887 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.169 13.427 -11.784 18.143 hybrid contribution 1.397 0.735 0.216 1.593 sum -1.772 14.162 -11.568 18.372 Atomic orbital electron populations 1.21905 0.95039 1.02093 1.01678 1.21121 0.96140 0.96220 0.97995 1.21852 1.00941 0.95929 1.01846 1.21642 1.00629 0.95042 0.97980 1.21609 1.01644 0.94892 0.96777 1.21280 1.00886 0.92586 0.98811 1.21716 1.03848 0.96463 0.94594 1.21754 0.79413 0.81307 0.89444 1.90610 1.42256 1.66805 1.46490 1.42994 1.58832 1.09219 1.17312 1.17836 0.96159 1.03196 0.92075 1.20875 0.94865 0.98779 0.96570 1.20603 1.03152 1.02242 1.00254 1.20655 0.95083 0.96780 0.99096 1.20794 1.00232 1.05864 0.97961 1.17845 0.92139 0.92627 0.91626 1.20519 1.07671 1.00366 1.28486 0.90020 1.28363 1.10658 0.91758 0.90296 1.70577 1.07171 1.35190 1.30833 0.83013 0.67737 0.76903 0.79079 1.20065 1.19526 1.17429 0.92312 0.92192 0.93149 0.90895 0.92781 0.92114 0.93035 0.92717 0.92412 0.90789 0.90813 0.93267 0.92798 0.86489 0.87019 0.75165 0.87299 0.86601 0.86648 0.88688 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.95 71.98 0.64 -1.33 16 2 C -0.10 -1.34 2.92 -10.79 -0.03 -1.37 16 3 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16 4 C -0.12 -1.92 4.68 30.60 0.14 -1.78 16 5 C -0.11 -1.89 4.97 30.60 0.15 -1.74 16 6 C -0.10 -2.31 4.50 30.60 0.14 -2.17 16 7 C -0.13 -3.08 5.70 29.85 0.17 -2.91 16 8 C 0.49 18.28 7.67 87.65 0.67 18.95 16 9 O -0.58 -26.21 13.40 -3.03 -0.04 -26.25 16 10 N -0.64 -26.01 4.90 -302.28 -1.48 -27.49 16 11 C 0.00 0.10 6.33 38.88 0.25 0.34 16 12 C -0.09 -4.45 8.69 22.36 0.19 -4.26 16 13 C -0.24 -11.37 10.04 22.42 0.22 -11.14 16 14 C -0.10 -4.63 9.97 22.01 0.22 -4.41 16 15 C -0.23 -11.92 7.87 22.47 0.18 -11.74 16 16 C 0.06 3.25 5.32 -21.18 -0.11 3.13 16 17 C -0.54 -27.24 8.35 23.38 0.20 -27.04 16 18 H 0.08 3.85 7.39 -2.91 -0.02 3.83 16 19 C 0.01 0.30 4.95 85.26 0.42 0.72 16 20 N -0.81 -42.40 12.32 21.83 0.27 -42.13 16 21 Si 1.12 40.78 30.00 68.60 2.06 42.83 16 22 H -0.28 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 24 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.77 6.57 -2.39 -0.02 0.76 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.14 6.57 -2.39 -0.02 1.12 16 36 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 37 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 40 H 0.41 14.75 7.95 -92.71 -0.74 14.01 16 41 H 0.11 5.33 6.20 -2.91 -0.02 5.31 16 42 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 44 H 0.10 5.11 6.45 -2.91 -0.02 5.09 16 45 H 0.28 15.54 6.62 -92.70 -0.61 14.92 16 Total: -1.00 -63.00 361.66 5.30 -57.70 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: 0.38 Total: 43.35 kcal Atomic # 6 Polarization: -52.13 SS G_CDS: 4.12 Total: -48.01 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -1.21 Total: -69.63 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.04 Total: -26.25 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.06 Total: 42.83 kcal Total: -63.00 5.30 -57.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410831299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.379 kcal (2) G-P(sol) polarization free energy of solvation -63.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds