Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38166 * 120.03064 * 2 1 4 4 C 1.38239 * 120.05694 * 179.97438 * 3 2 1 5 5 C 1.38290 * 120.11352 * 359.97438 * 4 3 2 6 6 C 1.38118 * 120.05418 * 359.76383 * 5 4 3 7 7 C 1.38715 * 120.02922 * 179.97438 * 2 1 3 8 8 O 1.35904 * 120.05214 * 0.02562 * 7 2 1 9 9 C 1.42899 * 116.99702 * 185.69412 * 8 7 2 10 10 H 1.08994 * 109.47312 * 35.12917 * 9 8 7 11 11 C 1.53005 * 109.46696 * 275.12740 * 9 8 7 12 12 C 1.53003 * 109.46907 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46850 * 60.00281 * 12 11 9 14 14 C 1.53005 * 109.47136 * 299.99579 * 13 12 11 15 15 C 1.53001 * 109.46922 * 155.13106 * 9 8 7 16 16 H 1.09006 * 109.46873 * 60.00313 * 15 9 8 17 17 N 1.46894 * 109.47117 * 299.99898 * 15 9 8 18 18 C 1.46901 * 110.99825 * 155.00260 * 17 15 9 19 19 C 1.50707 * 109.46714 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00214 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99626 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99956 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00433 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47025 * 89.99870 * 23 21 19 25 25 H 1.48497 * 109.47227 * 210.00191 * 23 21 19 26 26 H 1.48501 * 109.46855 * 330.00167 * 23 21 19 27 27 H 1.08997 * 109.47458 * 270.02323 * 1 2 3 28 28 H 1.09000 * 109.46690 * 30.02425 * 1 2 3 29 29 H 1.09005 * 109.47031 * 150.02192 * 1 2 3 30 30 H 1.08001 * 119.97204 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.94671 * 179.97438 * 4 3 2 32 32 H 1.08000 * 119.97030 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.02769 * 180.28199 * 6 5 4 34 34 H 1.08994 * 109.47384 * 300.00132 * 11 9 8 35 35 H 1.09000 * 109.47223 * 60.00861 * 11 9 8 36 36 H 1.09005 * 109.47419 * 300.00604 * 12 11 9 37 37 H 1.08992 * 109.47459 * 180.02562 * 12 11 9 38 38 H 1.09003 * 109.47174 * 180.02562 * 13 12 11 39 39 H 1.08994 * 109.47282 * 60.00006 * 13 12 11 40 40 H 1.08994 * 109.47384 * 300.00365 * 14 13 12 41 41 H 1.09001 * 109.46753 * 179.97438 * 14 13 12 42 42 H 1.00899 * 110.99546 * 278.95553 * 17 15 9 43 43 H 1.09000 * 109.47049 * 299.99407 * 18 17 15 44 44 H 1.09000 * 109.47347 * 60.00134 * 18 17 15 45 45 H 0.96993 * 119.99988 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5808 1.1968 0.0005 5 6 4.2752 0.0009 0.0016 6 6 3.5887 -1.1976 0.0071 7 6 2.2012 -1.2010 0.0005 8 8 1.5233 -2.3789 0.0005 9 6 2.2979 -3.5730 0.1274 10 1 3.1463 -3.3876 0.7861 11 6 2.8061 -4.0000 -1.2511 12 6 3.6349 -5.2790 -1.1154 13 6 2.7644 -6.3906 -0.5259 14 6 2.2562 -5.9636 0.8526 15 6 1.4279 -4.6849 0.7171 16 1 0.5795 -4.8704 0.0583 17 7 0.9398 -4.2749 2.0406 18 6 -0.3073 -4.9725 2.3810 19 6 -0.7761 -4.5277 3.7425 20 1 -0.2045 -3.7999 4.2994 21 6 -1.9346 -5.0499 4.2773 22 7 -2.3440 -4.6613 5.4652 23 14 -2.9230 -6.3092 3.3146 24 1 -2.4466 -7.6748 3.6514 25 1 -4.3601 -6.1852 3.6673 26 1 -2.7478 -6.0686 1.8597 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6585 2.1315 -0.0004 31 1 4.1196 2.1329 0.0001 32 1 5.3552 0.0041 0.0024 33 1 4.1314 -2.1313 0.0125 34 1 1.9578 -4.1855 -1.9097 35 1 3.4260 -3.2079 -1.6712 36 1 4.4834 -5.0940 -0.4565 37 1 3.9974 -5.5830 -2.0973 38 1 3.3550 -7.3016 -0.4288 39 1 1.9160 -6.5756 -1.1847 40 1 3.1045 -5.7785 1.5114 41 1 1.6356 -6.7554 1.2723 42 1 1.6433 -4.4257 2.7480 43 1 -1.0699 -4.7365 1.6388 44 1 -0.1309 -6.0481 2.3915 45 1 -3.1589 -5.0290 5.8415 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411566171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = -30.601658 kcal Electronic energy + Delta-G solvation = -23592.950480 eV Core-core repulsion = 20381.612105 eV Total energy + Delta-G solvation = -3211.338375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38265 -38.60377 -36.53107 -34.67420 -32.63970 -32.34158 -30.25251 -29.83497 -29.03147 -26.55448 -26.08373 -23.26846 -22.39018 -21.41302 -21.28672 -20.80764 -19.78701 -17.81947 -16.92643 -16.03774 -15.55707 -15.22922 -14.99698 -14.56516 -14.45218 -14.26199 -13.93763 -13.41531 -13.35633 -13.05205 -12.95502 -12.68149 -12.59747 -12.37201 -12.10802 -12.05460 -11.80210 -11.39870 -11.26706 -11.19312 -11.04764 -10.84890 -10.73747 -10.60966 -10.51811 -10.30589 -10.02352 -9.68289 -9.25996 -8.68572 -8.58696 -7.85338 -7.43543 -6.04178 -4.01678 1.44818 1.61856 3.28319 3.36379 3.39184 3.43656 3.90970 4.42967 4.57414 4.70492 4.86475 4.93127 4.95257 5.09558 5.13273 5.17512 5.26699 5.29129 5.33781 5.40443 5.46710 5.53679 5.54711 5.66345 5.79048 5.81772 5.88552 5.99347 6.01014 6.03988 6.06934 6.08065 6.11215 6.27637 6.38731 6.45983 6.50614 6.60154 6.69455 6.78797 6.98125 7.03575 7.62021 7.76352 7.89507 8.33433 8.66509 9.04487 9.57826 11.09290 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013522 B = 0.005123 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.184261 B = 5464.185421 C = 6945.902650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.117 4.117 3 C -0.086 4.086 4 C -0.166 4.166 5 C -0.090 4.090 6 C -0.213 4.213 7 C 0.146 3.854 8 O -0.282 6.282 9 C 0.102 3.898 10 H 0.069 0.931 11 C -0.146 4.146 12 C -0.114 4.114 13 C -0.119 4.119 14 C -0.147 4.147 15 C 0.090 3.910 16 H 0.080 0.920 17 N -0.667 5.667 18 C 0.168 3.832 19 C -0.513 4.513 20 H 0.078 0.922 21 C 0.069 3.931 22 N -0.901 5.901 23 Si 0.876 3.124 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.267 1.267 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.334 0.666 43 H 0.026 0.974 44 H -0.021 1.021 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 4.361 -15.236 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.117 4.117 3 C -0.104 4.104 4 C -0.184 4.184 5 C -0.108 4.108 6 C -0.231 4.231 7 C 0.099 3.901 8 O -0.194 6.194 9 C 0.045 3.955 10 H 0.087 0.913 11 C -0.184 4.184 12 C -0.152 4.152 13 C -0.157 4.157 14 C -0.186 4.186 15 C -0.021 4.021 16 H 0.098 0.902 17 N -0.295 5.295 18 C 0.040 3.960 19 C -0.551 4.551 20 H 0.096 0.904 21 C -0.133 4.133 22 N -0.540 5.540 23 Si 0.704 3.296 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.191 1.191 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.151 0.849 43 H 0.044 0.956 44 H -0.004 1.004 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.642 4.856 -15.332 20.456 hybrid contribution 0.025 -1.653 -0.108 1.657 sum 12.667 3.203 -15.440 20.226 Atomic orbital electron populations 1.20600 0.90395 1.02200 1.02935 1.19329 0.96733 0.90403 1.05268 1.20844 0.94066 0.96723 0.98800 1.20927 0.94222 0.97775 1.05482 1.20844 0.99338 0.92048 0.98580 1.21269 0.93316 0.99195 1.09344 1.18913 0.90241 0.86409 0.94521 1.86221 1.35314 1.11568 1.86337 1.22458 0.94089 0.83523 0.95422 0.91274 1.22153 1.00571 0.98007 0.97696 1.21477 0.98106 0.94607 1.00969 1.21542 0.99520 0.97841 0.96794 1.22291 1.00282 0.98726 0.97304 1.21572 0.96410 0.90000 0.94124 0.90174 1.60504 1.07300 1.60726 1.00991 1.20013 0.87705 0.90780 0.97511 1.21052 1.08863 1.25209 1.00004 0.90357 1.24893 0.97149 0.96466 0.94769 1.69902 1.23673 1.43973 1.16446 0.86842 0.79700 0.82019 0.81050 1.20413 1.21163 1.19148 0.90804 0.92348 0.91053 0.85838 0.86462 0.86426 0.85623 0.90869 0.91389 0.91931 0.91688 0.91955 0.91785 0.91697 0.90923 0.84886 0.95552 1.00366 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.79 36.00 0.35 -1.15 16 2 C -0.12 -1.74 5.89 -104.47 -0.62 -2.35 16 3 C -0.09 -1.09 9.70 -39.61 -0.38 -1.48 16 4 C -0.17 -1.94 10.04 -39.56 -0.40 -2.34 16 5 C -0.09 -1.08 10.04 -39.61 -0.40 -1.47 16 6 C -0.21 -2.87 8.24 -39.43 -0.32 -3.19 16 7 C 0.15 2.28 6.57 -39.21 -0.26 2.02 16 8 O -0.28 -4.78 8.71 -19.44 -0.17 -4.95 16 9 C 0.10 1.49 1.77 -26.73 -0.05 1.44 16 10 H 0.07 0.99 6.31 -51.93 -0.33 0.66 16 11 C -0.15 -1.70 5.18 -26.73 -0.14 -1.84 16 12 C -0.11 -1.13 5.92 -26.73 -0.16 -1.29 16 13 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 14 C -0.15 -2.01 5.17 -26.75 -0.14 -2.15 16 15 C 0.09 1.49 2.16 -67.74 -0.15 1.34 16 16 H 0.08 1.41 7.80 -51.93 -0.40 1.01 16 17 N -0.67 -13.76 6.10 -108.01 -0.66 -14.42 16 18 C 0.17 4.07 4.31 -4.97 -0.02 4.05 16 19 C -0.51 -14.78 9.87 -34.44 -0.34 -15.12 16 20 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 21 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 22 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 23 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 29 H 0.07 1.09 7.53 -51.93 -0.39 0.70 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.13 1.52 5.43 -52.49 -0.28 1.23 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.75 6.90 -51.93 -0.36 0.39 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 41 H 0.07 1.09 7.45 -51.93 -0.39 0.70 16 42 H 0.33 6.69 8.46 -39.29 -0.33 6.36 16 43 H 0.03 0.67 7.11 -51.93 -0.37 0.30 16 44 H -0.02 -0.50 6.86 -51.93 -0.36 -0.86 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -31.45 352.51 -10.13 -41.58 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.45 Total: 5.64 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -3.27 Total: -23.08 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.11 Total: -41.57 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.17 Total: -4.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.45 -10.13 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411566171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.983 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds