Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38157 * 120.02729 * 2 1 4 4 C 1.38248 * 120.05224 * 180.02562 * 3 2 1 5 5 C 1.38284 * 120.11499 * 359.97438 * 4 3 2 6 6 C 1.38122 * 120.05222 * 0.28219 * 5 4 3 7 7 C 1.38717 * 120.02423 * 180.02562 * 2 1 3 8 8 O 1.35896 * 120.05585 * 0.02562 * 7 2 1 9 9 C 1.42901 * 117.00133 * 185.24591 * 8 7 2 10 10 H 1.09008 * 109.46876 * 34.91461 * 9 8 7 11 11 C 1.52997 * 109.47120 * 274.92262 * 9 8 7 12 12 C 1.53005 * 109.46936 * 299.99865 * 11 9 8 13 13 C 1.53003 * 109.46682 * 299.99640 * 12 11 9 14 14 C 1.53006 * 109.47178 * 60.00387 * 13 12 11 15 15 C 1.52996 * 109.47517 * 154.91777 * 9 8 7 16 16 H 1.08996 * 109.47182 * 179.97438 * 15 9 8 17 17 N 1.46895 * 109.47199 * 300.00050 * 15 9 8 18 18 C 1.46901 * 110.99998 * 204.99840 * 17 15 9 19 19 C 1.50705 * 109.47113 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99723 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00027 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47456 * 89.99904 * 23 21 19 25 25 H 1.48501 * 109.47258 * 209.99976 * 23 21 19 26 26 H 1.48500 * 109.47170 * 329.99901 * 23 21 19 27 27 H 1.08997 * 109.46855 * 90.00118 * 1 2 3 28 28 H 1.08995 * 109.47166 * 210.00487 * 1 2 3 29 29 H 1.08997 * 109.47134 * 330.00646 * 1 2 3 30 30 H 1.07995 * 119.97642 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.94371 * 180.02562 * 4 3 2 32 32 H 1.08002 * 119.97709 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.02734 * 179.71987 * 6 5 4 34 34 H 1.08997 * 109.47252 * 59.99462 * 11 9 8 35 35 H 1.08996 * 109.47374 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.46964 * 180.02562 * 12 11 9 37 37 H 1.08996 * 109.47187 * 59.99766 * 12 11 9 38 38 H 1.08996 * 109.47411 * 299.99988 * 13 12 11 39 39 H 1.08998 * 109.46743 * 179.97438 * 13 12 11 40 40 H 1.08997 * 109.47289 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.46708 * 59.99232 * 14 13 12 42 42 H 1.00897 * 111.00119 * 328.95482 * 17 15 9 43 43 H 1.08997 * 109.47452 * 299.99932 * 18 17 15 44 44 H 1.08996 * 109.47072 * 60.00683 * 18 17 15 45 45 H 0.97007 * 119.99878 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5809 1.1967 -0.0005 5 6 4.2752 0.0009 -0.0005 6 6 3.5887 -1.1976 -0.0059 7 6 2.2012 -1.2010 -0.0005 8 8 1.5233 -2.3789 -0.0016 9 6 2.2986 -3.5737 0.1143 10 1 3.1536 -3.3903 0.7651 11 6 2.7932 -3.9970 -1.2702 12 6 1.5932 -4.2543 -2.1838 13 6 0.7287 -5.3677 -1.5886 14 6 0.2341 -4.9443 -0.2040 15 6 1.4342 -4.6869 0.7095 16 1 2.0254 -5.5983 0.7974 17 7 0.9593 -4.2805 2.0388 18 6 0.6573 -5.4527 2.8711 19 6 0.1736 -4.9973 4.2237 20 1 0.0985 -3.9424 4.4433 21 6 -0.1721 -5.9271 5.1813 22 7 -0.0802 -7.2115 4.9140 23 14 -0.7724 -5.3625 6.8577 24 1 -2.2493 -5.2099 6.8291 25 1 -0.3986 -6.3702 7.8825 26 1 -0.1464 -4.0586 7.1942 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 1.6585 2.1314 0.0004 31 1 4.1196 2.1328 -0.0001 32 1 5.3553 0.0039 -0.0005 33 1 4.1314 -2.1314 -0.0105 34 1 3.4091 -3.2039 -1.6942 35 1 3.3849 -4.9081 -1.1818 36 1 1.9455 -4.5564 -3.1701 37 1 1.0018 -3.3430 -2.2722 38 1 1.3201 -6.2790 -1.5003 39 1 -0.1265 -5.5507 -2.2392 40 1 -0.3821 -5.7373 0.2198 41 1 -0.3573 -4.0330 -0.2925 42 1 1.6286 -3.6773 2.4930 43 1 -0.1179 -6.0495 2.3905 44 1 1.5577 -6.0551 2.9908 45 1 -0.3231 -7.8657 5.5878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411566172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = -33.128015 kcal Electronic energy + Delta-G solvation = -23660.344067 eV Core-core repulsion = 20448.896141 eV Total energy + Delta-G solvation = -3211.447926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.51170 -38.53538 -36.20323 -34.48099 -32.72794 -32.33823 -30.17938 -29.88480 -28.78565 -26.63144 -25.76841 -23.26266 -22.51922 -21.72305 -21.28710 -20.68900 -19.45089 -17.49348 -16.65459 -15.79694 -15.70107 -15.54089 -14.93861 -14.62463 -14.40971 -13.96716 -13.92673 -13.76464 -13.22274 -13.04430 -12.84239 -12.53533 -12.35578 -12.14845 -11.98089 -11.87941 -11.76107 -11.39126 -11.24133 -11.14714 -10.96855 -10.77871 -10.73430 -10.64479 -10.31164 -10.12767 -9.92141 -9.62175 -9.14064 -8.76296 -8.46656 -7.93712 -7.26860 -6.02256 -4.03632 1.37040 1.53960 3.33317 3.38941 3.40321 3.43131 3.82530 4.43371 4.73044 4.76866 4.85864 4.88038 4.93331 5.07365 5.26413 5.31675 5.33846 5.34040 5.37797 5.52292 5.57366 5.62672 5.70734 5.74519 5.76868 5.84645 5.88438 5.94941 6.02382 6.06541 6.31438 6.33682 6.34986 6.38598 6.43405 6.53532 6.61117 6.66038 6.84771 6.91885 7.26625 7.41116 7.66376 7.81155 8.14366 8.40355 8.62031 9.05789 9.61273 11.08885 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.004650 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.141086 B = 6019.818173 C = 7189.243633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.118 4.118 3 C -0.086 4.086 4 C -0.165 4.165 5 C -0.088 4.088 6 C -0.212 4.212 7 C 0.142 3.858 8 O -0.279 6.279 9 C 0.088 3.912 10 H 0.067 0.933 11 C -0.143 4.143 12 C -0.112 4.112 13 C -0.119 4.119 14 C -0.103 4.103 15 C 0.096 3.904 16 H 0.050 0.950 17 N -0.678 5.678 18 C 0.195 3.805 19 C -0.512 4.512 20 H 0.062 0.938 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.898 3.102 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.327 0.673 43 H 0.030 0.970 44 H -0.016 1.016 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.935 11.685 -14.631 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.183 4.183 5 C -0.106 4.106 6 C -0.231 4.231 7 C 0.095 3.905 8 O -0.191 6.191 9 C 0.031 3.969 10 H 0.085 0.915 11 C -0.181 4.181 12 C -0.149 4.149 13 C -0.158 4.158 14 C -0.141 4.141 15 C -0.015 4.015 16 H 0.068 0.932 17 N -0.309 5.309 18 C 0.068 3.932 19 C -0.551 4.551 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.048 0.952 44 H 0.002 0.998 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.029 11.526 -14.750 19.667 hybrid contribution 0.978 -0.256 1.237 1.597 sum 7.007 11.270 -13.514 18.940 Atomic orbital electron populations 1.20618 0.90471 1.03277 1.01912 1.19295 0.96656 0.90357 1.05577 1.20849 0.94073 0.96735 0.98755 1.20942 0.94237 0.97812 1.05343 1.20868 0.99446 0.92024 0.98285 1.21300 0.93376 0.99275 1.09159 1.18945 0.90288 0.86502 0.94748 1.86245 1.35013 1.11341 1.86510 1.22698 0.93989 0.83945 0.96268 0.91512 1.22100 0.98576 1.01800 0.95645 1.21413 0.96391 0.99608 0.97490 1.21571 0.99177 0.97835 0.97170 1.21445 0.97626 1.02213 0.92805 1.21555 0.94652 0.93373 0.91911 0.93228 1.60633 1.47404 1.21076 1.01747 1.19611 0.95084 0.86944 0.91558 1.21185 1.43592 0.93303 0.96971 0.91994 1.24974 0.95822 0.94813 0.98911 1.69962 1.48917 1.00259 1.34698 0.86498 0.79138 0.78317 0.83451 1.20595 1.21342 1.19874 0.91848 0.90186 0.92101 0.85855 0.86427 0.86346 0.85568 0.91574 0.90701 0.92509 0.91395 0.92435 0.92109 0.91646 0.90834 0.85560 0.95234 0.99816 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.79 36.01 0.35 -0.98 16 2 C -0.12 -1.60 5.89 -104.47 -0.62 -2.22 16 3 C -0.09 -1.01 9.70 -39.61 -0.38 -1.39 16 4 C -0.17 -1.82 10.04 -39.56 -0.40 -2.22 16 5 C -0.09 -1.01 10.04 -39.61 -0.40 -1.41 16 6 C -0.21 -2.74 8.25 -39.43 -0.33 -3.07 16 7 C 0.14 2.05 6.57 -39.21 -0.26 1.79 16 8 O -0.28 -4.32 7.36 -19.41 -0.14 -4.46 16 9 C 0.09 1.28 1.74 -26.73 -0.05 1.23 16 10 H 0.07 0.96 6.29 -51.92 -0.33 0.63 16 11 C -0.14 -1.72 5.28 -26.73 -0.14 -1.86 16 12 C -0.11 -1.34 5.78 -26.73 -0.15 -1.49 16 13 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 14 C -0.10 -1.71 5.28 -26.73 -0.14 -1.85 16 15 C 0.10 1.68 2.28 -67.72 -0.15 1.52 16 16 H 0.05 0.90 7.80 -51.93 -0.41 0.50 16 17 N -0.68 -14.59 6.16 -108.00 -0.67 -15.26 16 18 C 0.19 5.09 5.24 -4.97 -0.03 5.06 16 19 C -0.51 -14.62 9.32 -34.44 -0.32 -14.94 16 20 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 23 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.18 7.53 -51.93 -0.39 0.78 16 29 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.50 5.43 -52.48 -0.29 1.21 16 34 H 0.07 0.74 6.92 -51.93 -0.36 0.38 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.21 7.45 -51.93 -0.39 0.82 16 41 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 42 H 0.33 6.96 8.34 -39.29 -0.33 6.63 16 43 H 0.03 0.83 7.44 -51.93 -0.39 0.44 16 44 H -0.02 -0.44 8.06 -51.93 -0.42 -0.86 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -30.29 353.95 -10.46 -40.75 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.43 Total: 4.97 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -3.26 Total: -22.04 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.07 Total: -41.46 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.14 Total: -4.46 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.29 -10.46 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411566172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.618 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds