Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38157 * 120.02729 * 2 1 4 4 C 1.38248 * 120.05224 * 180.02562 * 3 2 1 5 5 C 1.38284 * 120.11499 * 359.97438 * 4 3 2 6 6 C 1.38122 * 120.05222 * 0.28219 * 5 4 3 7 7 C 1.38717 * 120.02423 * 180.02562 * 2 1 3 8 8 O 1.35896 * 120.05585 * 0.02562 * 7 2 1 9 9 C 1.42901 * 117.00133 * 185.24591 * 8 7 2 10 10 H 1.09008 * 109.46876 * 34.91461 * 9 8 7 11 11 C 1.52997 * 109.47120 * 274.92262 * 9 8 7 12 12 C 1.53005 * 109.46936 * 299.99865 * 11 9 8 13 13 C 1.53003 * 109.46682 * 299.99640 * 12 11 9 14 14 C 1.53006 * 109.47178 * 60.00387 * 13 12 11 15 15 C 1.52996 * 109.47517 * 154.91777 * 9 8 7 16 16 H 1.08996 * 109.47182 * 179.97438 * 15 9 8 17 17 N 1.46895 * 109.47199 * 300.00050 * 15 9 8 18 18 C 1.46901 * 110.99998 * 204.99840 * 17 15 9 19 19 C 1.50705 * 109.47113 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99723 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00027 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47456 * 89.99904 * 23 21 19 25 25 H 1.48501 * 109.47258 * 209.99976 * 23 21 19 26 26 H 1.48500 * 109.47170 * 329.99901 * 23 21 19 27 27 H 1.08997 * 109.46855 * 90.00118 * 1 2 3 28 28 H 1.08995 * 109.47166 * 210.00487 * 1 2 3 29 29 H 1.08997 * 109.47134 * 330.00646 * 1 2 3 30 30 H 1.07995 * 119.97642 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.94371 * 180.02562 * 4 3 2 32 32 H 1.08002 * 119.97709 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.02734 * 179.71987 * 6 5 4 34 34 H 1.08997 * 109.47252 * 59.99462 * 11 9 8 35 35 H 1.08996 * 109.47374 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.46964 * 180.02562 * 12 11 9 37 37 H 1.08996 * 109.47187 * 59.99766 * 12 11 9 38 38 H 1.08996 * 109.47411 * 299.99988 * 13 12 11 39 39 H 1.08998 * 109.46743 * 179.97438 * 13 12 11 40 40 H 1.08997 * 109.47289 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.46708 * 59.99232 * 14 13 12 42 42 H 1.00897 * 111.00119 * 328.95482 * 17 15 9 43 43 H 1.08997 * 109.47452 * 299.99932 * 18 17 15 44 44 H 1.08996 * 109.47072 * 60.00683 * 18 17 15 45 45 H 0.97007 * 119.99878 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5809 1.1967 -0.0005 5 6 4.2752 0.0009 -0.0005 6 6 3.5887 -1.1976 -0.0059 7 6 2.2012 -1.2010 -0.0005 8 8 1.5233 -2.3789 -0.0016 9 6 2.2986 -3.5737 0.1143 10 1 3.1536 -3.3903 0.7651 11 6 2.7932 -3.9970 -1.2702 12 6 1.5932 -4.2543 -2.1838 13 6 0.7287 -5.3677 -1.5886 14 6 0.2341 -4.9443 -0.2040 15 6 1.4342 -4.6869 0.7095 16 1 2.0254 -5.5983 0.7974 17 7 0.9593 -4.2805 2.0388 18 6 0.6573 -5.4527 2.8711 19 6 0.1736 -4.9973 4.2237 20 1 0.0985 -3.9424 4.4433 21 6 -0.1721 -5.9271 5.1813 22 7 -0.0802 -7.2115 4.9140 23 14 -0.7724 -5.3625 6.8577 24 1 -2.2493 -5.2099 6.8291 25 1 -0.3986 -6.3702 7.8825 26 1 -0.1464 -4.0586 7.1942 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 1.6585 2.1314 0.0004 31 1 4.1196 2.1328 -0.0001 32 1 5.3553 0.0039 -0.0005 33 1 4.1314 -2.1314 -0.0105 34 1 3.4091 -3.2039 -1.6942 35 1 3.3849 -4.9081 -1.1818 36 1 1.9455 -4.5564 -3.1701 37 1 1.0018 -3.3430 -2.2722 38 1 1.3201 -6.2790 -1.5003 39 1 -0.1265 -5.5507 -2.2392 40 1 -0.3821 -5.7373 0.2198 41 1 -0.3573 -4.0330 -0.2925 42 1 1.6286 -3.6773 2.4930 43 1 -0.1179 -6.0495 2.3905 44 1 1.5577 -6.0551 2.9908 45 1 -0.3231 -7.8657 5.5878 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411566172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = -50.039405 kcal Electronic energy + Delta-G solvation = -23661.077400 eV Core-core repulsion = 20448.896141 eV Total energy + Delta-G solvation = -3212.181259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59475 -39.63215 -37.40883 -36.15071 -34.36237 -33.67623 -31.28060 -30.99424 -30.29443 -27.74181 -27.51785 -24.39142 -24.20137 -22.77863 -22.59653 -21.97687 -20.62438 -18.68690 -18.50273 -17.16055 -16.88458 -16.57010 -16.48620 -16.09153 -15.72583 -15.35819 -15.10797 -14.86666 -14.51300 -14.37952 -14.05873 -13.89946 -13.76329 -13.55299 -13.11493 -13.09221 -12.95879 -12.93646 -12.70952 -12.57652 -12.27729 -12.14459 -12.12366 -12.07147 -11.71559 -11.45211 -11.37160 -11.04503 -10.96496 -10.67245 -9.68513 -9.11422 -8.92873 -8.24221 -6.35019 0.44883 0.59550 1.38931 1.40885 1.52019 2.31465 2.38310 2.89672 3.08996 3.38816 3.58754 3.77800 3.91903 3.99054 4.02254 4.17572 4.25481 4.30101 4.35099 4.43319 4.47633 4.50242 4.56111 4.67965 4.81545 4.84945 4.86516 4.86934 4.97600 5.03511 5.05745 5.16860 5.22065 5.24568 5.29704 5.35085 5.39833 5.49231 5.54431 5.61448 5.62887 5.67435 5.98850 6.03269 6.42789 6.61393 6.71106 6.85992 7.35766 8.87315 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.004650 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.141086 B = 6019.818173 C = 7189.243633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.140 4.140 3 C -0.089 4.089 4 C -0.163 4.163 5 C -0.092 4.092 6 C -0.221 4.221 7 C 0.114 3.886 8 O -0.297 6.297 9 C 0.095 3.905 10 H 0.067 0.933 11 C -0.137 4.137 12 C -0.106 4.106 13 C -0.113 4.113 14 C -0.098 4.098 15 C 0.092 3.908 16 H 0.043 0.957 17 N -0.678 5.678 18 C 0.213 3.787 19 C -0.535 4.535 20 H 0.059 0.941 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.265 1.265 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.060 0.940 42 H 0.328 0.672 43 H 0.002 0.998 44 H -0.040 1.040 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 13.588 -15.258 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.140 4.140 3 C -0.107 4.107 4 C -0.181 4.181 5 C -0.110 4.110 6 C -0.240 4.240 7 C 0.068 3.932 8 O -0.210 6.210 9 C 0.038 3.962 10 H 0.085 0.915 11 C -0.175 4.175 12 C -0.143 4.143 13 C -0.151 4.151 14 C -0.136 4.136 15 C -0.018 4.018 16 H 0.061 0.939 17 N -0.308 5.308 18 C 0.085 3.915 19 C -0.574 4.574 20 H 0.078 0.922 21 C -0.194 4.194 22 N -0.573 5.573 23 Si 0.795 3.205 24 H -0.199 1.199 25 H -0.204 1.204 26 H -0.190 1.190 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.145 0.855 43 H 0.020 0.980 44 H -0.023 1.023 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.236 13.445 -15.399 21.686 hybrid contribution 0.623 -0.793 1.400 1.725 sum 7.859 12.652 -13.999 20.440 Atomic orbital electron populations 1.20557 0.90484 1.02496 1.02229 1.19563 0.97037 0.90958 1.06465 1.21171 0.94726 0.96886 0.97883 1.21342 0.94141 0.98916 1.03707 1.21235 1.00848 0.91602 0.97293 1.21466 0.92838 1.00364 1.09309 1.19218 0.91194 0.86225 0.96532 1.86202 1.35744 1.11890 1.87146 1.22552 0.92841 0.83006 0.97825 0.91475 1.22083 0.98837 1.02782 0.93760 1.21381 0.95876 0.98489 0.98601 1.21531 1.00078 0.98591 0.94865 1.21376 0.96814 1.00521 0.94878 1.21647 0.95536 0.94614 0.90022 0.93906 1.60517 1.48263 1.19244 1.02824 1.19215 0.92981 0.87766 0.91516 1.21513 1.44238 0.93349 0.98253 0.92248 1.25908 0.95612 0.94787 1.03124 1.70083 1.49475 1.01479 1.36229 0.85362 0.78695 0.78205 0.78213 1.19860 1.20424 1.18969 0.91028 0.93199 0.90511 0.83542 0.83581 0.83839 0.84990 0.90091 0.89453 0.89803 0.92426 0.91768 0.90776 0.94593 0.92161 0.85463 0.98036 1.02256 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.54 9.79 71.24 0.70 -1.85 16 2 C -0.14 -3.69 5.89 -19.77 -0.12 -3.80 16 3 C -0.09 -1.88 9.70 22.25 0.22 -1.67 16 4 C -0.16 -3.11 10.04 22.28 0.22 -2.89 16 5 C -0.09 -1.87 10.04 22.25 0.22 -1.65 16 6 C -0.22 -5.42 8.25 22.37 0.18 -5.23 16 7 C 0.11 3.26 6.57 22.51 0.15 3.41 16 8 O -0.30 -9.36 7.36 -92.38 -0.68 -10.04 16 9 C 0.09 2.77 1.74 30.59 0.05 2.82 16 10 H 0.07 1.94 6.29 -2.38 -0.01 1.92 16 11 C -0.14 -3.08 5.28 30.59 0.16 -2.92 16 12 C -0.11 -2.36 5.78 30.60 0.18 -2.19 16 13 C -0.11 -2.90 5.92 30.60 0.18 -2.72 16 14 C -0.10 -3.40 5.28 30.60 0.16 -3.24 16 15 C 0.09 3.35 2.28 44.92 0.10 3.45 16 16 H 0.04 1.63 7.80 -2.39 -0.02 1.61 16 17 N -0.68 -30.73 6.16 -495.59 -3.05 -33.78 16 18 C 0.21 11.75 5.24 85.56 0.45 12.20 16 19 C -0.54 -31.52 9.32 25.60 0.24 -31.28 16 20 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 21 C 0.00 0.23 5.46 84.66 0.46 0.70 16 22 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 23 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.54 7.53 -2.39 -0.02 1.52 16 29 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 30 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.13 2.96 5.43 -2.91 -0.02 2.94 16 34 H 0.08 1.63 6.92 -2.39 -0.02 1.61 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.43 7.68 -2.39 -0.02 1.41 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.42 7.45 -2.39 -0.02 1.40 16 41 H 0.06 2.23 7.68 -2.39 -0.02 2.21 16 42 H 0.33 14.59 8.34 -89.70 -0.75 13.84 16 43 H 0.00 0.09 7.44 -2.39 -0.02 0.08 16 44 H -0.04 -2.36 8.06 -2.39 -0.02 -2.38 16 45 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -67.32 353.95 2.36 -64.97 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.22 Total: 25.23 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 3.56 Total: -36.84 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -2.77 Total: -90.64 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.68 Total: -10.04 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.32 2.36 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411566172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.927 kcal (2) G-P(sol) polarization free energy of solvation -67.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds